Clone LD23646 Report

Search the DGRC for LD23646

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:236
Well:46
Vector:pOT2
Associated Gene/Transcriptaay-RA
Protein status:LD23646.pep: gold
Preliminary Size:1508
Sequenced Size:1524

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3705 2001-01-01 Release 2 assignment
CG3705 2001-07-04 Blastp of sequenced clone
CG3705 2003-01-01 Sim4 clustering to Release 3
aay 2008-04-29 Release 5.5 accounting
aay 2008-08-15 Release 5.9 accounting
aay 2008-12-18 5.12 accounting

Clone Sequence Records

LD23646.complete Sequence

1524 bp (1524 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051689

> LD23646.complete
ATCGCGAGCAGTTCGACTAAGGAAAACCCGCTGGCACACACAAACCGTAA
CCACTTATCAAACAAAAACAGCTGGCCCGCAACGCGAAGCGCGTGTGCAA
AAAGAAACGAGAAAACATACACAACAAAAAAGCACAAGATATAAGAGATA
CACAAAAAGAGAAGCAGTGGAAAATTTTGGGCACCAAACACAGCCGAAGC
TTTTACGCCAAACGTTAAACGAAAAGCCAAAACTTAAACCGCTTCCAAAA
AACACAACGTGTTCGCCGGTCGAGATGAGCGGTTCCGTATTGAGTTTGGC
GCGTCCTGCAGCAGCCACAAATGGCCATAATCTGCTGACCAAACAGCTGA
ATTGCAATGGCAATGGCACCACCGGTGGCGCGGCGAAAACCACTGTGGCC
TCGGCCATAACACCGCCCAAGCAGCCCCAGTTGGCGGCCAAGGTCATCCA
GCAGTCGCAGATCGTCTGTTTCGATGTGGACTCCACGGTGATTTGCGAGG
AGGGCATCGACGAACTGGCCGAATATTGTGGCAAGGGGAGCGAGGTGGCT
CGCGTTACCAAGGAGGCGATGGGCGGTGCCATGACCTTCCAGGATGCCCT
CAAAATTCGCTTGAACATCATACGGCCGACACAGCAGCAAGTGAGGGATT
TCATCCAGGAGCGACCCAGTACACTGAGCAAAAACGTGAAGCGTTTCGTC
AGCCATTTGAAGGCGGAGGGAAAACAGGTTTACTTGATCTCCGGCGGATT
CGATTGCCTAATTGCGCCCGTGGCCAATGAATTGGGTATTCCCCTGAAAA
ACGTCTATGCCAACAAGATGCTGTTCGATTATTTGGGCGAATACGATAGC
TTTGATATCAACCAGCCCACTTCGCGTTCCGGCGGAAAGGCAGAGGCTAT
CGCCCTGATAAGGAAGGAGAATAGCGACGATTCCCTAATCACCATGATCG
GCGATGGAGCCACCGATCTGGAGGCCGTACCGCCAGCCAACTACTTTATA
GGTTTCGGTGGCAATGTCGTGCGGCCGGAGGTCTATCGCCGTGCACAGTA
TTACGTAACGGATTTTGAGCAGCTGATGGGGCAGTGAGATACGTATACGT
AAGGCGGTGGGGGAGTGGCGAATTTAGTATTTGAAATCAACGTGTTATAG
CTCGTAGTGATGCACATGTTTATGCCCAAGTATGTGTGTAATAATATGTA
CGTTAGTTCGTAATTAAACAATAATAAAAAGCGATAGTAATAAATGGAAA
ACGAACAAGTGAAATCAACTTTGTTACTGTTAACTTAACAGAATATGTTA
AGCGCGCACTGTTAGTGAATCAGCAGAAGTTGTAAAAATACAGGGTGCGC
CCTTATGCTAATGAACAGTTCACGCTTTAGCATCCAACTGTAAGCAATTT
ATTTAATTTAAAGAAATTTCATGCACATAAAATATGTATAAAAATAAATT
TCTGTATTTATATGTTTATGGCGAACAAAAACGAAAAATACAACAAAAGT
TTAAATAAAAAAAAAAAAAAAAAA

LD23646.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
aay-RA 1552 aay-RA 24..1533 1..1510 7550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9415194..9416699 1..1506 7530 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9423276..9424785 1..1510 7550 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9416376..9417885 1..1510 7550 100 Plus
Blast to na_te.dros performed 2019-03-16 04:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
S2 1735 S2 S2 1735bp 62..164 1405..1505 132 60.2 Plus

LD23646.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:05:13 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9415194..9416699 1..1506 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:37 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
aay-RA 1..813 275..1087 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:06 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
aay-RA 1..813 275..1087 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:32 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
aay-RA 1..813 275..1087 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:25:40 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
aay-RA 1..813 275..1087 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:16 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
aay-RA 24..1529 1..1506 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:06 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
aay-RA 24..1529 1..1506 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:32 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
aay-RA 24..1529 1..1506 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:44 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
aay-RA 24..1529 1..1506 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:25:40 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
aay-RA 24..1529 1..1506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:13 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9423276..9424781 1..1506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:13 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9423276..9424781 1..1506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:13 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9423276..9424781 1..1506 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:32 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9416376..9417881 1..1506 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:27 Download gff for LD23646.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9416376..9417881 1..1506 100   Plus

LD23646.hyp Sequence

Translation from 0 to 1086

> LD23646.hyp
SRAVRLRKTRWHTQTVTTYQTKTAGPQREARVQKETRKHTQQKSTRYKRY
TKREAVENFGHQTQPKLLRQTLNEKPKLKPLPKNTTCSPVEMSGSVLSLA
RPAAATNGHNLLTKQLNCNGNGTTGGAAKTTVASAITPPKQPQLAAKVIQ
QSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMGGAMTFQDAL
KIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAEGKQVYLISGGF
DCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQPTSRSGGKAEAI
ALIRKENSDDSLITMIGDGATDLEAVPPANYFIGFGGNVVRPEVYRRAQY
YVTDFEQLMGQ*

LD23646.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
aay-PA 270 CG3705-PA 1..270 92..361 1380 100 Plus

LD23646.pep Sequence

Translation from 274 to 1086

> LD23646.pep
MSGSVLSLARPAAATNGHNLLTKQLNCNGNGTTGGAAKTTVASAITPPKQ
PQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMG
GAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAEGK
QVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQPTS
RSGGKAEAIALIRKENSDDSLITMIGDGATDLEAVPPANYFIGFGGNVVR
PEVYRRAQYYVTDFEQLMGQ*

LD23646.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10695-PA 273 GF10695-PA 1..271 1..270 1335 91.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15374-PA 270 GG15374-PA 1..270 1..270 1412 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15137-PA 275 GH15137-PA 1..275 1..268 1010 71.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
aay-PA 270 CG3705-PA 1..270 1..270 1380 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12074-PA 270 GI12074-PA 1..270 1..268 1067 76.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22628-PA 271 GL22628-PA 1..269 1..269 1211 84.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17627-PA 271 GA17627-PA 1..269 1..269 1205 83.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25146-PA 270 GM25146-PA 1..270 1..270 1412 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14180-PA 270 GD14180-PA 1..270 1..270 1421 98.5 Plus
Dsim\GD10671-PA 229 GD10671-PA 1..217 1..217 1132 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13344-PA 278 GJ13344-PA 1..278 1..268 1054 75.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17158-PA 272 GK17158-PA 1..268 1..269 1120 80.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20838-PA 270 GE20838-PA 1..270 1..270 1416 98.1 Plus