Clone LD23656 Report

Search the DGRC for LD23656

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:236
Well:56
Vector:pOT2
Associated Gene/TranscriptSin1-RA
Protein status:LD23656.pep: gold
Preliminary Size:2033
Sequenced Size:2014

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10105 2001-01-01 Release 2 assignment
CG10105 2003-01-01 Sim4 clustering to Release 3
CG10105 2003-01-14 Blastp of sequenced clone
Sin1 2008-04-29 Release 5.5 accounting
Sin1 2008-08-15 Release 5.9 accounting
Sin1 2008-12-18 5.12 accounting

Clone Sequence Records

LD23656.complete Sequence

2014 bp (2014 high quality bases) assembled on 2003-01-14

GenBank Submission: BT003261

> LD23656.complete
ATAGAAATTAATTTTGAAAAAGAGATTTTCTTTTGTTTACTACCATGGCG
ACCTACTCCAACCAGCATTGGCTGCTCTCCCACATCCGCAACTCCTTCAT
ATCCACGGACGACACCGGAATGTGCGAGACGGTGATGCTGAGCGATGACA
TGCCCAAACACTATTTGCGAAAATTCGGTAACTCGGGCGCTGGAGGAGAT
CACTATCATTGGCGACGGGCGCACAAGACACCGCCGACGGGGGGCGGGAC
AACACCGGAGCGGAACACCCGGCATCCGGATGCGCCACTCCAGGAAGTGG
ACTTCATCTGCTATCCGGGACTGGACCTCAGCGACGACGAGGAGGACATG
TCCACGCACTCCTTTGACATCCAAATGTATCCGGAGGTGGGCGCCCACCG
CTTTCGCTCCAACACTGCCCAAAAACTAGAGAAACTGGATATTGCCAAGC
GAAGGGCGGCGCGCATCAAGAGTGTTAACTACCAGGAGGAAGTGCAGCCA
CCGGAGAGCGATGATTTCTTTAAACGCAAAGAGTTGCCCCTCAGCAAAGC
TGAGCGAGTTAAAAATGAACCGAAAGCCAACGACGATGATCTGTCAGATG
AGGGTGTTCAGAGCCAGCTCACTGAACAGTTGGCCAAAAGTCCAAAGCAA
GCACAGAATCGCTTCATTGAATTCGCCCGCTTCGATGGCACCTCCCAAGT
GGGTATGCAAACGAAACGGATAAACGTGTTTTTAAATATGCTTCCCGAGC
CGGATCGCAACTACCCGTTGAAGATCTGCGTCGTAGCCACTGCCAAAATC
CAGGAGGTAATTGGTTTTGTCTGCTACAGGACCTCCTTACAATATCCCGA
CGTTCCTTTGAAGTCCCTGCAGCATTACGCTTTGTATATGACAGAGGATA
ATGATGATATGGAAGACTTCCCACCGTTGGACAATCGCGAACCCTGCTCT
AAGTTTGGCTTCTCCCAACTGACCCTCGCAGAGCGTCGGCCATTGGCTCC
AGTGACGCGAGTTGATTACCACAGCCAGCTGGGCAGTAAATCCATGACTT
CCGTGGAAGACAAGACAGCTCTGTCCGATGCGGCTGTCAAGGCTCTGCAA
AATATTAGCCTAAATGGAGGAACTAGTGATCCGGGTGGAGGAGGTGGAGG
AGGCGATAGTCCACACGATAATGTCAAGGAGTATGAGAAGCGATTGTTGA
ATCACAACGATATGCTGGAAGCACCCATGCATCGTACTTTCCGCCTCAAC
ATCATCGACAAGAGGTTCTTCAAATCCGATGTGACTCTGGGAATATCTGG
TGAGAGAATAGAGATCGATCAGTGCAAGAATGCCAAGTTCTGGCCGCAGA
AGAAGCCCGTATCCACTCCCATTGACTTTGTTGCTCACTGCGAGATTTTG
GAGCGACGCCACCTGAAGGCTCTGTTGCGCATCTGGCTGAAGTCAAACTC
CTCGTCCCCTTCCTTCTCCACGGGCTGCACTTCGGCGCCGATCAACGCCA
GCGTAACCACACTGAATGCGGGAAGCGGCAGTGGTGGGATTGCCCACTCG
CCCAGCAGTCCGGGTCACTCTTCCGGACTCTTTTCAAGCAGCAATATTCG
CTTTAAGCACTACGACTTCGATACGGACACCCACACGGCGGAGCAGATCC
ACAACAAGCTGAACTGCATACTAGAGATGCGATCCAGCGATCTGAGGCGC
GAGTTCCTTTTGCAGCGCGATCGGAAGCAGGAGAAGAGGCAGCTGAAGTT
GTAGTATTTATTCCTATGGCAGCGGCTGTCGCTCGTTTGCCTAGCAGGCG
GGCAACTGTCCTGCCGCTGCAACGTCCCCGCCTACTTCTCCGCCTCCGCC
TCCGCCTCCTGTTCGATAAGTTGTATTAGTTGCTAACTAAAGATTGTGTT
ACACATGTTTGCCTAGCCTGTAAGTATTTATTGAACTCACCCAACTACGA
AGCCTGGTCCTGAAAATAAAATTGCAAAATTTACACTTAAAAAAAAAAAA
AAAAAAAAAAAAAA

LD23656.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sin1-RA 2026 Sin1-RA 29..2021 1..1992 9925 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10299171..10301159 1..1988 9895 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14411863..14413855 1..1992 9915 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14413062..14415054 1..1992 9925 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 11:26:00 has no hits.

LD23656.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:26:44 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10299171..10301159 1..1988 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:40 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 1..1710 45..1754 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:25 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 1..1710 45..1754 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:18:44 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 1..1710 45..1754 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:14 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 1..1710 45..1754 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:12 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 1..1710 45..1754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:30 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 29..2017 1..1988 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:25 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 53..2041 1..1988 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:18:44 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 39..2027 1..1988 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:14 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 29..2017 1..1988 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:12 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 39..2027 1..1988 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:44 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14411863..14413851 1..1988 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:44 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14411863..14413851 1..1988 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:44 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14411863..14413851 1..1988 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:18:44 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10299368..10301356 1..1988 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:38 Download gff for LD23656.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14413062..14415050 1..1988 99   Plus

LD23656.pep Sequence

Translation from 44 to 1753

> LD23656.pep
MATYSNQHWLLSHIRNSFISTDDTGMCETVMLSDDMPKHYLRKFGNSGAG
GDHYHWRRAHKTPPTGGGTTPERNTRHPDAPLQEVDFICYPGLDLSDDEE
DMSTHSFDIQMYPEVGAHRFRSNTAQKLEKLDIAKRRAARIKSVNYQEEV
QPPESDDFFKRKELPLSKAERVKNEPKANDDDLSDEGVQSQLTEQLAKSP
KQAQNRFIEFARFDGTSQVGMQTKRINVFLNMLPEPDRNYPLKICVVATA
KIQEVIGFVCYRTSLQYPDVPLKSLQHYALYMTEDNDDMEDFPPLDNREP
CSKFGFSQLTLAERRPLAPVTRVDYHSQLGSKSMTSVEDKTALSDAAVKA
LQNISLNGGTSDPGGGGGGGDSPHDNVKEYEKRLLNHNDMLEAPMHRTFR
LNIIDKRFFKSDVTLGISGERIEIDQCKNAKFWPQKKPVSTPIDFVAHCE
ILERRHLKALLRIWLKSNSSSPSFSTGCTSAPINASVTTLNAGSGSGGIA
HSPSSPGHSSGLFSSSNIRFKHYDFDTDTHTAEQIHNKLNCILEMRSSDL
RREFLLQRDRKQEKRQLKL*

LD23656.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13505-PA 579 GF13505-PA 1..579 1..569 2422 83 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20456-PA 569 GG20456-PA 1..569 1..569 2768 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19748-PA 601 GH19748-PA 1..601 1..569 2024 69.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sin1-PA 569 CG10105-PA 1..569 1..569 3011 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20284-PA 603 GI20284-PA 1..603 1..569 1968 66.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10693-PA 578 GL10693-PA 1..573 1..568 2457 82.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10075-PA 578 GA10075-PA 1..573 1..568 2455 82.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21545-PA 571 GM21545-PA 1..571 1..569 3000 97.2 Plus
Dsec\GM15129-PA 186 GM15129-PA 48..186 426..569 536 84 Plus
Dsec\GM21543-PA 186 GM21543-PA 58..186 441..569 530 93 Plus
Dsec\GM11657-PA 186 GM11657-PA 48..186 426..569 530 84.7 Plus
Dsec\GM10067-PA 186 GM10067-PA 48..186 426..569 530 84.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11053-PA 571 GD11053-PA 1..571 1..569 3003 97.4 Plus
Dsim\GD11052-PA 102 GD11052-PA 1..36 1..36 178 86.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22011-PA 608 GJ22011-PA 1..608 1..569 2137 73.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21478-PA 591 GK21478-PA 1..590 1..568 2102 72.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13587-PA 571 GE13587-PA 1..571 1..569 2854 95.3 Plus

LD23656.hyp Sequence

Translation from 44 to 1753

> LD23656.hyp
MATYSNQHWLLSHIRNSFISTDDTGMCETVMLSDDMPKHYLRKFGNSGAG
GDHYHWRRAHKTPPTGGGTTPERNTRHPDAPLQEVDFICYPGLDLSDDEE
DMSTHSFDIQMYPEVGAHRFRSNTAQKLEKLDIAKRRAARIKSVNYQEEV
QPPESDDFFKRKELPLSKAERVKNEPKANDDDLSDEGVQSQLTEQLAKSP
KQAQNRFIEFARFDGTSQVGMQTKRINVFLNMLPEPDRNYPLKICVVATA
KIQEVIGFVCYRTSLQYPDVPLKSLQHYALYMTEDNDDMEDFPPLDNREP
CSKFGFSQLTLAERRPLAPVTRVDYHSQLGSKSMTSVEDKTALSDAAVKA
LQNISLNGGTSDPGGGGGGGDSPHDNVKEYEKRLLNHNDMLEAPMHRTFR
LNIIDKRFFKSDVTLGISGERIEIDQCKNAKFWPQKKPVSTPIDFVAHCE
ILERRHLKALLRIWLKSNSSSPSFSTGCTSAPINASVTTLNAGSGSGGIA
HSPSSPGHSSGLFSSSNIRFKHYDFDTDTHTAEQIHNKLNCILEMRSSDL
RREFLLQRDRKQEKRQLKL*

LD23656.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sin1-PA 569 CG10105-PA 1..569 1..569 3011 100 Plus