Clone LD23660 Report

Search the DGRC for LD23660

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:236
Well:60
Vector:pOT2
Associated Gene/Transcriptgcl-RA
Protein status:LD23660.pep: gold
Preliminary Size:2200
Sequenced Size:2465

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8411 2001-01-01 Release 2 assignment
CG8411 2001-10-10 Blastp of sequenced clone
CG8411 2003-01-01 Sim4 clustering to Release 3
gcl 2008-04-29 Release 5.5 accounting
gcl 2008-08-15 Release 5.9 accounting
gcl 2008-12-18 5.12 accounting

Clone Sequence Records

LD23660.complete Sequence

2465 bp (2465 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061319

> LD23660.complete
CCAACTGCAGCAAAACAGAGATAAAATTGACAGCGAACGGAATTGAAATG
GCTTAAACCGCATGCCTAATCAGACTCGCGTAGAATTTTAGCCCGTGTTT
ATTTTATTTATTGAAACGAAGCCAGTGAACGTGGGGTGCAATTGCTGTTA
TATAAAAGTACGGCACTGTAACTGCAGTTTTACAAGTAAGAATTCCTGCG
CTCAGCCATGGGTCAAATAGTGGGATCCATGCATATGAACGTCGCTGAGG
TGTTCAGCAATCGACGGAAGCGGAAGCGCAGCACTGATTCATCTTTGGGG
AAGGATGATCCGGCCCAGTTAGACACCACTCAGCCCAAAAAAAAAAAACT
TCTTACTACCACCCAGTACATATACAAGGCGCTCTTCAAGGAGGAAAAGA
ACTCGGATGTGGCTGTCATGGCTCTGGATAAGGTCTGGCACCTGCATAAG
GTGTACCTGAGCCAGAGTCCATACTTCTATACTATGTTCAATGGGACGTG
GCGGGAAGCCCAGCAGAATTTCATTCAGATCACAATCCTGGACGACCGGA
TCACCGTTGCTAGCCTGGATGCTGTCTTTGGTTCCATGTATTCCGATGAG
ATCGAAATCGAGTCAGCAGATGTTATCTCGGTATTGGCCACAGCCACGTT
GTTCCACTTAGACGGAATCATCGACAAGTGTGCCGAGGTGATGGTGGATA
ACATTAGTCCGGAGACAGCTATCCAGTATTACGAGGCCGCCTGCCAGTAC
GGTGTGGTCGGAGTCAAGAAGTCCACCTTTCAGTGGTTCCAGATCAATCT
GCTAAGCATTTATAGTAAGCAACCGAACCTGCTTAGGCACATCTCCATTG
AGCTGATGAGTGCCCTGACCGCCAGTCCCGATTTGTATGTGATGCAGACG
GAGTTCTCGCTGTACACTCTACTGCGCACATGGATGTTCCTACGACTGCA
TCCCGACTACGATCCAGAGGACCCGGTCCAGCGGGCGGAGGCGCTAAAGA
CGCAGGAGCTTTTGGTTAATGCCGGCGTGGAAACGCATGCGCCTAGTGGT
GATGTCGTCCAGTGGACATACTTTACCAGCCGCTCGGAGGAACGCTCGTT
CTTGGCCACGCCCGAGGGGCAGCCTTATGTGAAGGTCTTTCAGAAGCTAC
GAACCCAGTACCTGACCAACCACTACATGGATCTAAAAATCATATACAAT
GACAATATTATACCCAAGGAGTGGCTGTATCGGCACATTCACAACCACTG
GGATGCATTACTACGTATCGATCATGGGCAGGAGGATTGTAGTCCTCAGC
AGCTGGACGATGAGCAGTTCTTTGAGAACTGCATGCGATGCGGACGTATG
TTGCTTGAGCCTGGCTACCAGAAGTGGCGCTGGACGGGCTTCAACTTTGG
CATGGATCTCATCCTGATCATGGACTCGCGTAGACTGAACATTCGTCGGC
ACCACCGGCACGAGCACGAGCGAGTGCTTAGCCTGCAGACGAAACGCAAG
TTCATGGTCCGCACCACGGTGACCTCGATAAACGCCCAGCGCCAGGCAGT
CTTCACCCAAACGTCCGAGATCTGTTCTCTTAGCCTCGAAAAGAACGAGG
AGGTGCCACTCATGGTGTTAGACCCAAAGTTGGTGCATCCACTTCTCATT
TCAATAAACATGCTGGTGGTAATGCCACCGAATCAGAGTTTCAAGGAAAT
TGTTCCGCTCAGCGAGGAGGCGACAACCTCTCTCTCCATACCCATTTCGG
AAATCGGAGCAAACAGCGACAGACCGCTGTCCCCGTCCAGTGCTGATGAT
TCGGCCGTTTTCATTGGTGACTCTGAGCCTTCGACGCCATCCTCGCCAGC
CCCACGGCCCAGAATCGCTTGGTCGGCTAGCGAAACGGGCGCAATCTGCG
GACAACTGGCGTGCTGAGCACGTGCTGAGCAGTCCACCAAACCAATACCA
GTACCACCACTACCACCATTTTTTTGTTCATTTACCCGCAGCAGTTCGGG
CTCGTTGTAGTTGTTTTGTAAATTCGTTTATCGCCATCGCGATTAGCTAC
GGCTGATCACTCCATCTAGACGTTTGTACATCGAGTATAAGCATATCCGC
AATCGTTTTGGAATGCGCAGATCTATATTTTTGTATATCGTTTACATCAC
TAGTATCATGTAATGACGCTTTACGTCATCTACTTAAATGGAGTAGACGC
ACACTCTAGTGCCCTCGCACAATATGTAGGCGTTGCAAATAGTTTGTAAA
TTTGGAATTTAAAGATTAATTGTTATGTTTAAGTAACAAGAAAAAACGCG
GCAAAGAAATTATGGTTTAAGCGTCTTCGAATCCTGCAAGTTCAACGCAT
GTAATTACTGTCCCTAACACATTTTTACTCGCTAAATGTACGCACAGTAA
CTATTACCTTGAGTGATCATTTATTAAAGATTACACTTAATAAAAAAAAA
AAAAAAAAAAAAAAA

LD23660.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
gcl-RA 2638 gcl-RA 107..2552 1..2446 12230 100 Plus
gcl.f 2464 gcl.f 22..2464 1..2446 12160 99.8 Plus
gcl.a 2442 gcl.a 363..2442 367..2446 10400 100 Plus
gcl.a 2442 gcl.a 22..362 1..341 1705 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4615426..4616578 1289..2441 5765 100 Plus
chr2R 21145070 chr2R 4614409..4615356 342..1289 4740 100 Plus
chr2R 21145070 chr2R 4611860..4612043 1..184 920 100 Plus
chr2R 21145070 chr2R 4614194..4614350 185..341 770 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8727847..8729004 1289..2446 5790 100 Plus
2R 25286936 2R 8726830..8727777 342..1289 4740 100 Plus
2R 25286936 2R 8724281..8724464 1..184 920 100 Plus
2R 25286936 2R 8726615..8726771 185..341 785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8729046..8730203 1289..2446 5790 100 Plus
2R 25260384 2R 8728029..8728976 342..1289 4740 100 Plus
2R 25260384 2R 8725480..8725663 1..184 920 100 Plus
2R 25260384 2R 8727814..8727970 185..341 785 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:42:11 has no hits.

LD23660.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:43:12 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4611860..4612043 1..184 100 -> Plus
chr2R 4614194..4614350 185..341 99 -> Plus
chr2R 4614409..4615356 342..1289 100 -> Plus
chr2R 4615427..4616578 1290..2441 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:41 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 1..1710 208..1917 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:18 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 1..1710 208..1917 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:04:14 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 1..1710 208..1917 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:11 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 1..1710 208..1917 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:24 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 1..1710 208..1917 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:31 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 22..2462 1..2441 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:18 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 22..2462 1..2441 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:04:14 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 24..2464 1..2441 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:11 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 22..2462 1..2441 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:24 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
gcl-RA 24..2464 1..2441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:12 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8724281..8724464 1..184 100 -> Plus
2R 8726615..8726771 185..341 100 -> Plus
2R 8726830..8727777 342..1289 100 -> Plus
2R 8727848..8728999 1290..2441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:12 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8724281..8724464 1..184 100 -> Plus
2R 8726615..8726771 185..341 100 -> Plus
2R 8726830..8727777 342..1289 100 -> Plus
2R 8727848..8728999 1290..2441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:12 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8724281..8724464 1..184 100 -> Plus
2R 8726615..8726771 185..341 100 -> Plus
2R 8726830..8727777 342..1289 100 -> Plus
2R 8727848..8728999 1290..2441 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:04:14 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4611786..4611969 1..184 100 -> Plus
arm_2R 4614120..4614276 185..341 100 -> Plus
arm_2R 4614335..4615282 342..1289 100 -> Plus
arm_2R 4615353..4616504 1290..2441 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:03 Download gff for LD23660.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8728029..8728976 342..1289 100 -> Plus
2R 8729047..8730198 1290..2441 100   Plus
2R 8725480..8725663 1..184 100 -> Plus
2R 8727814..8727970 185..341 100 -> Plus

LD23660.pep Sequence

Translation from 207 to 1916

> LD23660.pep
MGQIVGSMHMNVAEVFSNRRKRKRSTDSSLGKDDPAQLDTTQPKKKKLLT
TTQYIYKALFKEEKNSDVAVMALDKVWHLHKVYLSQSPYFYTMFNGTWRE
AQQNFIQITILDDRITVASLDAVFGSMYSDEIEIESADVISVLATATLFH
LDGIIDKCAEVMVDNISPETAIQYYEAACQYGVVGVKKSTFQWFQINLLS
IYSKQPNLLRHISIELMSALTASPDLYVMQTEFSLYTLLRTWMFLRLHPD
YDPEDPVQRAEALKTQELLVNAGVETHAPSGDVVQWTYFTSRSEERSFLA
TPEGQPYVKVFQKLRTQYLTNHYMDLKIIYNDNIIPKEWLYRHIHNHWDA
LLRIDHGQEDCSPQQLDDEQFFENCMRCGRMLLEPGYQKWRWTGFNFGMD
LILIMDSRRLNIRRHHRHEHERVLSLQTKRKFMVRTTVTSINAQRQAVFT
QTSEICSLSLEKNEEVPLMVLDPKLVHPLLISINMLVVMPPNQSFKEIVP
LSEEATTSLSIPISEIGANSDRPLSPSSADDSAVFIGDSEPSTPSSPAPR
PRIAWSASETGAICGQLAC*

LD23660.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12379-PA 569 GF12379-PA 1..569 1..569 2708 89.6 Plus
Dana\GF17910-PA 756 GF17910-PA 86..257 66..243 164 26.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23382-PA 569 GG23382-PA 1..569 1..569 3025 97.7 Plus
Dere\GG16793-PA 775 GG16793-PA 90..261 66..243 158 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23097-PA 587 GH23097-PA 1..587 1..569 2321 78 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
gcl-PA 569 CG8411-PA 1..569 1..569 2972 100 Plus
gcl-PB 568 CG8411-PB 1..568 1..569 2956 99.8 Plus
Keap1-PC 744 CG3962-PC 58..229 66..243 159 25.7 Plus
Keap1-PA 744 CG3962-PA 58..229 66..243 159 25.7 Plus
Keap1-PB 776 CG3962-PB 90..261 66..243 159 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18923-PA 580 GI18923-PA 1..580 1..569 2377 79.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17121-PA 574 GL17121-PA 190..574 193..569 1680 84.7 Plus
Dper\GL17121-PA 574 GL17121-PA 1..82 1..82 323 78 Plus
Dper\GL21922-PA 745 GL21922-PA 58..229 66..243 160 25.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21057-PA 576 GA21057-PA 1..576 1..569 2616 86.5 Plus
Dpse\GA17807-PC 778 GA17807-PC 91..262 66..243 161 25.7 Plus
Dpse\GA17807-PB 745 GA17807-PB 58..229 66..243 160 25.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21062-PA 569 GM21062-PA 1..569 1..569 3066 98.9 Plus
Dsec\GM15387-PA 776 GM15387-PA 90..261 66..243 159 25.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10597-PA 547 GD10597-PA 1..547 1..569 2932 95.6 Plus
Dsim\GD10596-PA 154 GD10596-PA 1..126 1..126 665 99.2 Plus
Dsim\GD20252-PA 776 GD20252-PA 90..261 66..243 159 25.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19779-PA 583 GJ19779-PA 1..583 1..569 2461 81.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20675-PA 582 GK20675-PA 1..582 1..569 2464 82.5 Plus
Dwil\GK13905-PA 748 GK13905-PA 59..256 66..271 156 25.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19224-PA 569 GE19224-PA 1..569 1..569 3020 97 Plus
Dyak\GE26109-PA 777 GE26109-PA 91..262 66..243 159 25.7 Plus

LD23660.hyp Sequence

Translation from 207 to 1916

> LD23660.hyp
MGQIVGSMHMNVAEVFSNRRKRKRSTDSSLGKDDPAQLDTTQPKKKKLLT
TTQYIYKALFKEEKNSDVAVMALDKVWHLHKVYLSQSPYFYTMFNGTWRE
AQQNFIQITILDDRITVASLDAVFGSMYSDEIEIESADVISVLATATLFH
LDGIIDKCAEVMVDNISPETAIQYYEAACQYGVVGVKKSTFQWFQINLLS
IYSKQPNLLRHISIELMSALTASPDLYVMQTEFSLYTLLRTWMFLRLHPD
YDPEDPVQRAEALKTQELLVNAGVETHAPSGDVVQWTYFTSRSEERSFLA
TPEGQPYVKVFQKLRTQYLTNHYMDLKIIYNDNIIPKEWLYRHIHNHWDA
LLRIDHGQEDCSPQQLDDEQFFENCMRCGRMLLEPGYQKWRWTGFNFGMD
LILIMDSRRLNIRRHHRHEHERVLSLQTKRKFMVRTTVTSINAQRQAVFT
QTSEICSLSLEKNEEVPLMVLDPKLVHPLLISINMLVVMPPNQSFKEIVP
LSEEATTSLSIPISEIGANSDRPLSPSSADDSAVFIGDSEPSTPSSPAPR
PRIAWSASETGAICGQLAC*

LD23660.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
gcl-PA 569 CG8411-PA 1..569 1..569 2972 100 Plus
gcl-PB 568 CG8411-PB 1..568 1..569 2956 99.8 Plus
Keap1-PC 744 CG3962-PC 58..229 66..243 159 25.7 Plus
Keap1-PA 744 CG3962-PA 58..229 66..243 159 25.7 Plus
Keap1-PB 776 CG3962-PB 90..261 66..243 159 25.7 Plus