Clone LD23667 Report

Search the DGRC for LD23667

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:236
Well:67
Vector:pOT2
Associated Gene/TranscriptSyx7-RA
Protein status:LD23667.pep: gold
Preliminary Size:1679
Sequenced Size:1590

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5081 2001-01-01 Release 2 assignment
CG5081 2001-11-09 Blastp of sequenced clone
CG5081 2003-01-01 Sim4 clustering to Release 3
Syx7 2008-04-29 Release 5.5 accounting
Syx7 2008-08-15 Release 5.9 accounting
Syx7 2008-12-18 5.12 accounting

Clone Sequence Records

LD23667.complete Sequence

1590 bp (1590 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069516

> LD23667.complete
TAAAAACCTAGCTAAAATTTCAGTTTTGCGAACATTCCGCCTACTTAAAT
CAACAAATTTCAGATTGCGAAACGCGTAAAAAGTGCGAAGGAAATGCTCT
AAGATCAAGGTCACCGGCGAAGGTCACCAACGACAGCTAGGGCAACCACA
AAAGGAACAACTTGTCTCCAGCGATAACTCGAAGGTCATCAAAGTGTCTG
CCTACGAAAGCATGGACTTACAGCATATGGAGAATGGTCTAAGCGGCGGG
GGAGGAGGTGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAGATTAT
AGCCACCAGCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCAGCGCA
TGGTCAATCAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGAAGCAG
CTCCACCAAATAATGACCTACACCAACCAGCTGGTGACCGACACAAACAA
TCAAATCAACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGATCCAGC
GGGATAGGCTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCCAGTCT
GTTCAGCGCAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAGGCGCG
CGGAGATAGCTACAACATCGCCCGTCCACCCGGCTCATCGCGTACCGGCA
GCTCCAACAGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCGAGGAC
AACTTCTTCAATCGCAAATCAAACCAGCAACAGATGCAGACTCAGATGGA
GGAGCAGGCGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCATACGGG
AGTTGGAGAACAACATCGTGGGCGTGAACGAGATATACAAGAAGCTTGGC
GCCCTGGTCTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCGCAGGT
GGAACAGACTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCGCAAGG
CGAGCTCTTACAGGAACAAAGTGCGCAAGAAGAAGCTTATTTTGGTGGGC
ATCCTGAGCGCCGTGCTGCTGGCCATCATCTTGATACTCGTTTTTCAGTT
CAAGAATTAGAGCCTTCCGGCATCTCCGAATGATTCAAACCAAACTAGTA
AATTGTTGTGAAAAGACAAGAGTTGCCGCATGCAGGCCCCTAAACCCCGT
AATTCCCCACCCAATCCTTTGGACCTTAGGCGAGATTATGGCTTTAATCC
TTAATCCAACTTCCAATACTGGCTGAAATCGAAAACTGCGACTCGTAGAC
GAAGATATAGTGTTTTGAGGAGTATTCACCGGCACGTGCATCTGTTATAT
TTGCTTTAAAAACAATTTTATATTTTATGTGTACTACTTTTATTATTACG
CACCCTGTATATTGATTATTAGTATTGATTAACAACTGTTGGCTTCAAAT
TCTAATTATGTTCCGAAACTCATTCGCCAGCGCTTTGTATTGTATTGTAT
TGTATTTAGAGTTAAGAGGCAGAGGAAGCCATATATGCGATGGCATACAC
ACATGTACGAAAAATGAAATAATAAACATGAAAATCGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD23667.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Syx7.d 1746 Syx7.d 355..1740 153..1538 6930 100 Plus
Syx7-RB 1629 Syx7-RB 238..1623 153..1538 6930 100 Plus
Syx7.b 1648 Syx7.b 436..1642 332..1538 6035 100 Plus
Syx7.b 1648 Syx7.b 238..417 153..332 900 100 Plus
Syx7.d 1746 Syx7.d 29..183 1..155 775 100 Plus
Syx7.b 1648 Syx7.b 49..202 1..154 770 100 Plus
Syx7-RB 1629 Syx7-RB 49..202 1..154 770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21436515..21437088 964..1537 2855 99.8 Plus
chr3L 24539361 chr3L 21436039..21436457 546..964 2095 100 Plus
chr3L 24539361 chr3L 21435156..21435335 153..332 900 100 Plus
chr3L 24539361 chr3L 21434830..21434984 1..155 775 100 Plus
chr3L 24539361 chr3L 21435823..21435967 403..547 725 100 Plus
chr3L 24539361 chr3L 21435402..21435472 332..402 355 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21447555..21448129 964..1538 2875 100 Plus
3L 28110227 3L 21447079..21447497 546..964 2095 100 Plus
3L 28110227 3L 21446196..21446375 153..332 900 100 Plus
3L 28110227 3L 21445870..21446024 1..155 775 100 Plus
3L 28110227 3L 21446863..21447007 403..547 725 100 Plus
3L 28110227 3L 21446442..21446512 332..402 355 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21440655..21441229 964..1538 2875 100 Plus
3L 28103327 3L 21440179..21440597 546..964 2095 100 Plus
3L 28103327 3L 21439296..21439475 153..332 900 100 Plus
3L 28103327 3L 21438970..21439124 1..155 775 100 Plus
3L 28103327 3L 21439963..21440107 403..547 725 100 Plus
3L 28103327 3L 21439542..21439612 332..402 355 100 Plus
Blast to na_te.dros performed 2019-03-15 18:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 2570..2638 1308..1371 116 69.6 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 899..1018 1411..1291 116 56.2 Minus

LD23667.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:53 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21434830..21434983 1..154 100 -> Plus
chr3L 21435158..21435335 155..332 100 -> Plus
chr3L 21435403..21435472 333..402 100 -> Plus
chr3L 21435823..21435967 403..547 100 -> Plus
chr3L 21436041..21436457 548..964 100 -> Plus
chr3L 21436516..21437088 965..1537 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:43 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RB 1..849 212..1060 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:56 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RB 1..849 212..1060 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:53 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 1..849 212..1060 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:34 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RB 1..849 212..1060 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:09 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 1..849 212..1060 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:51 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 49..1585 1..1537 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:56 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 49..1585 1..1537 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:53 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 37..1573 1..1537 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:34 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 49..1585 1..1537 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:09 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 37..1573 1..1537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:53 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21445870..21446023 1..154 100 -> Plus
3L 21446198..21446375 155..332 100 -> Plus
3L 21446443..21446512 333..402 100 -> Plus
3L 21446863..21447007 403..547 100 -> Plus
3L 21447081..21447497 548..964 100 -> Plus
3L 21447556..21448128 965..1537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:53 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21445870..21446023 1..154 100 -> Plus
3L 21446198..21446375 155..332 100 -> Plus
3L 21446443..21446512 333..402 100 -> Plus
3L 21446863..21447007 403..547 100 -> Plus
3L 21447081..21447497 548..964 100 -> Plus
3L 21447556..21448128 965..1537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:53 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21445870..21446023 1..154 100 -> Plus
3L 21446198..21446375 155..332 100 -> Plus
3L 21446443..21446512 333..402 100 -> Plus
3L 21446863..21447007 403..547 100 -> Plus
3L 21447081..21447497 548..964 100 -> Plus
3L 21447556..21448128 965..1537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:53 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21439298..21439475 155..332 100 -> Plus
arm_3L 21439543..21439612 333..402 100 -> Plus
arm_3L 21439963..21440107 403..547 100 -> Plus
arm_3L 21438970..21439123 1..154 100 -> Plus
arm_3L 21440181..21440597 548..964 100 -> Plus
arm_3L 21440656..21441228 965..1537 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:15 Download gff for LD23667.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21440181..21440597 548..964 100 -> Plus
3L 21440656..21441228 965..1537 100   Plus
3L 21438970..21439123 1..154 100 -> Plus
3L 21439298..21439475 155..332 100 -> Plus
3L 21439543..21439612 333..402 100 -> Plus
3L 21439963..21440107 403..547 100 -> Plus

LD23667.hyp Sequence

Translation from 211 to 1059

> LD23667.hyp
MDLQHMENGLSGGGGGGLSEIDFQRLAQIIATSIQKVQQNVSTMQRMVNQ
LNTPQDSPELKKQLHQIMTYTNQLVTDTNNQINEVDKCKERHLKIQRDRL
VDEFTAALTAFQSVQRKTADIEKTALRQARGDSYNIARPPGSSRTGSSNS
SASQQDNNSFFEDNFFNRKSNQQQMQTQMEEQADLQALEEQEQVIRELEN
NIVGVNEIYKKLGALVYEQGLTVDSIESQVEQTSIFVSQGTENLRKASSY
RNKVRKKKLILVGILSAVLLAIILILVFQFKN*

LD23667.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Syx7-PB 282 CG5081-PB 1..282 1..282 1398 100 Plus
Syx7-PA 282 CG5081-PA 1..282 1..282 1398 100 Plus
Syx13-PB 284 CG11278-PB 35..274 11..274 271 25.8 Plus
Syx13-PA 284 CG11278-PA 35..274 11..274 271 25.8 Plus
Syx16-PA 352 CG1467-PA 206..348 132..277 191 34.2 Plus

LD23667.pep Sequence

Translation from 211 to 1059

> LD23667.pep
MDLQHMENGLSGGGGGGLSEIDFQRLAQIIATSIQKVQQNVSTMQRMVNQ
LNTPQDSPELKKQLHQIMTYTNQLVTDTNNQINEVDKCKERHLKIQRDRL
VDEFTAALTAFQSVQRKTADIEKTALRQARGDSYNIARPPGSSRTGSSNS
SASQQDNNSFFEDNFFNRKSNQQQMQTQMEEQADLQALEEQEQVIRELEN
NIVGVNEIYKKLGALVYEQGLTVDSIESQVEQTSIFVSQGTENLRKASSY
RNKVRKKKLILVGILSAVLLAIILILVFQFKN*

LD23667.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10875-PA 287 GF10875-PA 1..287 1..282 1193 94.1 Plus
Dana\GF24028-PA 281 GF24028-PA 33..279 11..280 240 26.4 Plus
Dana\GF20436-PA 356 GF20436-PA 236..341 163..268 149 38 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16188-PA 283 GG16188-PA 1..283 1..282 1448 98.2 Plus
Dere\GG15624-PA 285 GG15624-PA 36..282 11..281 228 27.3 Plus
Dere\GG17995-PA 349 GG17995-PA 203..332 132..262 163 35.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16098-PA 285 GH16098-PA 1..285 1..282 1166 84.6 Plus
Dgri\GH17144-PA 280 GH17144-PA 34..279 11..280 218 27.4 Plus
Dgri\GH12082-PA 354 GH12082-PA 202..337 132..262 158 33.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Syx7-PB 282 CG5081-PB 1..282 1..282 1398 100 Plus
Syx7-PA 282 CG5081-PA 1..282 1..282 1398 100 Plus
Syx13-PB 284 CG11278-PB 35..274 11..274 271 25.8 Plus
Syx13-PA 284 CG11278-PA 35..274 11..274 271 25.8 Plus
Syx16-PA 352 CG1467-PA 206..348 132..277 191 34.2 Plus
Syx4-PB 257 CG2715-PB 20..256 24..278 175 25 Plus
Syx4-PA 333 CG2715-PA 96..332 24..278 175 25 Plus
Syx1A-PB 296 CG31136-PB 35..292 22..276 163 22.7 Plus
Syx1A-PC 291 CG31136-PC 35..283 22..267 161 23.1 Plus
Syx1A-PA 291 CG31136-PA 35..283 22..267 161 23.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12362-PA 297 GI12362-PA 1..297 1..282 1128 79.3 Plus
Dmoj\GI11753-PA 279 GI11753-PA 32..270 11..274 188 27.3 Plus
Dmoj\GI10970-PA 320 GI10970-PA 221..319 180..278 152 33.3 Plus
Dmoj\GI11088-PA 352 GI11088-PA 227..349 155..278 152 32 Plus
Dmoj\GI11755-PA 272 GI11755-PA 37..270 23..279 145 24.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15057-PA 284 GL15057-PA 1..284 1..282 1251 92.3 Plus
Dper\GL25332-PA 281 GL25332-PA 35..271 13..274 234 29.4 Plus
Dper\GL26795-PA 360 GL26795-PA 213..357 132..278 170 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18647-PA 284 GA18647-PA 1..284 1..282 1251 92.3 Plus
Dpse\GA10884-PA 281 GA10884-PA 35..271 13..274 234 29.4 Plus
Dpse\GA13162-PA 360 GA13162-PA 213..357 132..278 163 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22370-PA 287 GM22370-PA 1..287 1..282 1435 96.5 Plus
Dsec\GM25395-PA 284 GM25395-PA 35..281 11..281 225 27.3 Plus
Dsec\GM22676-PA 350 GM22676-PA 204..337 132..268 168 35 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14962-PA 287 GD14962-PA 1..287 1..282 1445 97.2 Plus
Dsim\GD14427-PA 284 GD14427-PA 35..281 11..281 225 27.3 Plus
Dsim\GD15538-PA 350 GD15538-PA 204..337 132..268 168 35 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12254-PA 289 GJ12254-PA 1..289 1..282 1123 81.5 Plus
Dvir\GJ13463-PA 278 GJ13463-PA 31..274 11..277 198 25.6 Plus
Dvir\GJ18528-PA 315 GJ18528-PA 216..314 180..278 161 34.3 Plus
Dvir\GJ15770-PA 363 GJ15770-PA 223..350 141..268 150 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17194-PA 298 GK17194-PA 1..298 1..282 1051 79.5 Plus
Dwil\GK17426-PA 290 GK17426-PA 39..290 8..282 199 23.8 Plus
Dwil\GK19716-PA 353 GK19716-PA 217..349 145..277 167 36 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19759-PA 283 GE19759-PA 1..283 1..282 1448 98.2 Plus
Dyak\GE21949-PA 280 GE21949-PA 31..277 11..281 242 26.9 Plus
Dyak\GE23047-PA 79 GE23047-PA 1..48 1..47 161 97.9 Plus
Dyak\GE15352-PA 349 GE15352-PA 203..336 132..268 158 34.3 Plus
Dyak\GE23047-PA 79 GE23047-PA 49..79 252..282 147 100 Plus