Clone LD23669 Report

Search the DGRC for LD23669

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:236
Well:69
Vector:pOT2
Associated Gene/TranscriptPdk-RA
Protein status:LD23669.pep: gold
Preliminary Size:2200
Sequenced Size:2065

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8808 2002-01-03 Blastp of sequenced clone
CG8808 2003-01-01 Sim4 clustering to Release 3
Pdk 2008-04-29 Release 5.5 accounting
Pdk 2008-08-15 Release 5.9 accounting
Pdk 2008-12-18 5.12 accounting

Clone Sequence Records

LD23669.complete Sequence

2065 bp (2065 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075385

> LD23669.complete
CCCACGCAAAAGCGCTCGCAGCTTTTAGGTAAAATCGGCGTTCTTTCGAA
CATTGGAGAATCCAGAGCCACCTGGAGTCGCATTCTTAATCCGAATTCCC
AACCGTTCGCGTCAAAGTCGCGCAAAAACAAATAACTGCGAGTATAGTTA
ATCGCACGAAGAACTGCAGCTGAAATCGCGAGACAAAAGTGCACAAAAGA
CACAGCGAAGCAAATACCGTACAAATCGGCTGCGTTTATGGCGCACCAGG
AGAAGAGAAAGAATTTGCGCCCCGCCGCCCCCGCCTTTCAACACAAAAAC
AACAACAACGTGGAGCAGAGCTAACACAAAAAAGATATATAGAATAAAAT
ATATATTTTTGGTACCGCTTTTGTATGGTTAAAACTAATCAGAACGCTCC
ATTGATTTATTGAGCGCACACTGCCAGAGTTTTCGAGTTTTTCAAGACGT
TGCCAGCTGTTGTTGCCGCTCTTCGTCGCACACCTCCCGCCAACCAGAAC
ACCTCCGCCCCGCCTCCTTGCTTCGAAGAAAGCGAGAGCGCGGTCAACGT
CCTGCGAAGAGAGTGAGAAGGGTAGCGAGAGCGCGATAAAAGCGAAGGTG
AGCGAAAGGACACCGGCAGCCGCTTCATCTTCCTCTTCCCTCTCACCGCA
ATTCAACAATAATATAAAGCTGGTCTAAAAGTGGCAAACAAAGTTGTTGA
AGATAAAGACACAGCGAAAGCAACCGGCAAACGTAATCAGCACCCAAATC
CCCCGCGAACCAGAAAAATATAGCCAACATGCGCCTGTTTCCAGTCCGAT
TCTCAGCCGCCTCCTCGTCGATGGCGAGTTTGGCCAAAATGCTCGACTTT
TACTCGGGCTTCAACCCCTCGCCCCTCTCGATAAAGCAGTTCATGGACTT
TGGTCAGAATGCCTGCGAGAAGAAATCGTACATATTCCTGCGCAAGGAAC
TGCCTGTTCGACTGGCGAATATCATGAAGGAGATCGCCCTTCTGCCGGAT
AACCTGTTGCACACCAGATCCGTAAGCGAAGTTAGTTCCTGGTATGTCAA
GAGTTTCGAGGATGTGCTGGTGTACGAGAAAGCAGAGCCCACCCACGACA
ATCTGCAAAAGTTTGTGGCCGATTTGGATCTCATTAGGAATCGGCACAAC
GATGTGGTGCAAACGATGGCCCAGGGTGTGATCGAAATGAAGGAGAACGA
GGGCGGCCAGGTGGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCG
ACAGGCTCTACATGTCTCGCATCAGCATTCGAATGCTGATAAATCAGCAC
ACCCTTCTCTTTGGCGGAAATCCACATGCGGGTGGCCGCCATATTGGTTG
CCTGGATCCCGCCTGTGATCTGTCGGATGTGGTTCGCGATGCTTACGAGA
ATGCGCGATTCCTATGCGATCAGTACTACCTGACCAGTCCGGCATTGGAG
ATCCAGCAGCACAGCAGCGAGCCTGGAGACAACCTGCCCATCCGCACCGT
TTACGTGCCCTCGCACCTGTACTACATGCTTTTCGAGCTCTTCAAGAACT
CTATGCGAGCTGTTGTAGAGCACCATGGCCATGACAACAATGACACATTG
CCCCCCTTGAAAGTAGCCATTTGCAAGGGCAAGGAGGACATCTGTGTGAA
AATTTCTGACCAGGGAGGCGGCATTCCCCGCTCCCAGACCGATCAGCTCT
TCAAGTATATGTACAGCACAGCGCCGCAGCCCTCGAAGTCGGATCTGCAT
ACGGTGCCATTAGCGGGCTATGGATACGGTCTGCCGATCTCAAGGCTTTA
CGCCCGCTATTTCCATGGCGACATTGTGCTGCTCTCCTGCGAAGGATTCG
GAACAGATGCAATCATCTATCTAAAGGCTCTGTCCGACGAAGCAAACGAA
TTGCTGCCGATCTTCAACAAGACAAGCTCAAAGTTCTATCGCGCCACCGT
GCCCACGGGTGACTGGTCCAATCAGGTAAAATACGCTAAAAAGAAGAAGA
CGAGCGCTGTCAACCAGTAGACGTGTGAAAATGCCAAAGAGCAAAGCAAA
AAAAAAAAAAAAAAA

LD23669.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-RA 2860 Pdk-RA 114..2177 1..2064 10305 99.9 Plus
Pdk-RB 2373 Pdk-RB 114..2088 1..1975 9875 100 Plus
Pdk.c 2143 Pdk.c 31..2005 1..1975 9875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5313976..5314879 1..904 4520 100 Plus
chr2R 21145070 chr2R 5320005..5320580 1302..1877 2880 100 Plus
chr2R 21145070 chr2R 5319485..5319695 902..1112 1055 100 Plus
chr2R 21145070 chr2R 5319750..5319940 1111..1301 955 100 Plus
chr2R 21145070 chr2R 5320643..5320815 1875..2047 865 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9426472..9427375 1..904 4520 100 Plus
2R 25286936 2R 9432490..9433065 1302..1877 2880 100 Plus
2R 25286936 2R 9431970..9432180 902..1112 1055 100 Plus
2R 25286936 2R 9432235..9432425 1111..1301 955 100 Plus
2R 25286936 2R 9433128..9433317 1875..2064 935 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9427671..9428574 1..904 4520 100 Plus
2R 25260384 2R 9433689..9434264 1302..1877 2880 100 Plus
2R 25260384 2R 9433169..9433379 902..1112 1055 100 Plus
2R 25260384 2R 9433434..9433624 1111..1301 955 100 Plus
2R 25260384 2R 9434327..9434516 1875..2064 935 99.4 Plus
Blast to na_te.dros performed on 2019-03-15 20:42:06 has no hits.

LD23669.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:43:19 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5313976..5314877 1..902 100 -> Plus
chr2R 5319486..5319693 903..1110 100 -> Plus
chr2R 5319750..5319940 1111..1301 100 -> Plus
chr2R 5320005..5320579 1302..1876 100 -> Plus
chr2R 5320645..5320815 1877..2047 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:44 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1..1242 779..2020 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:29 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1..1242 779..2020 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:56:12 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1..1242 779..2020 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:21 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1..1242 779..2020 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:41:51 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1..1242 779..2020 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:20:44 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 31..2077 1..2047 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:29 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 31..2077 1..2047 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:12 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 34..2080 1..2047 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:21 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 31..2077 1..2047 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:51 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 34..2080 1..2047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:19 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9426472..9427373 1..902 100 -> Plus
2R 9431971..9432178 903..1110 100 -> Plus
2R 9432235..9432425 1111..1301 100 -> Plus
2R 9432490..9433064 1302..1876 100 -> Plus
2R 9433130..9433300 1877..2047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:19 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9426472..9427373 1..902 100 -> Plus
2R 9431971..9432178 903..1110 100 -> Plus
2R 9432235..9432425 1111..1301 100 -> Plus
2R 9432490..9433064 1302..1876 100 -> Plus
2R 9433130..9433300 1877..2047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:19 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9426472..9427373 1..902 100 -> Plus
2R 9431971..9432178 903..1110 100 -> Plus
2R 9432235..9432425 1111..1301 100 -> Plus
2R 9432490..9433064 1302..1876 100 -> Plus
2R 9433130..9433300 1877..2047 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:12 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5313977..5314878 1..902 100 -> Plus
arm_2R 5319476..5319683 903..1110 100 -> Plus
arm_2R 5319740..5319930 1111..1301 100 -> Plus
arm_2R 5319995..5320569 1302..1876 100 -> Plus
arm_2R 5320635..5320805 1877..2047 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:04 Download gff for LD23669.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9427671..9428572 1..902 100 -> Plus
2R 9433170..9433377 903..1110 100 -> Plus
2R 9433434..9433624 1111..1301 100 -> Plus
2R 9433689..9434263 1302..1876 100 -> Plus
2R 9434329..9434499 1877..2047 100   Plus

LD23669.hyp Sequence

Translation from 778 to 2019

> LD23669.hyp
MRLFPVRFSAASSSMASLAKMLDFYSGFNPSPLSIKQFMDFGQNACEKKS
YIFLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWYVKSFEDVLVYE
KAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPTE
SSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSD
VVRDAYENARFLCDQYYLTSPALEIQQHSSEPGDNLPIRTVYVPSHLYYM
LFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIP
RSQTDQLFKYMYSTAPQPSKSDLHTVPLAGYGYGLPISRLYARYFHGDIV
LLSCEGFGTDAIIYLKALSDEANELLPIFNKTSSKFYRATVPTGDWSNQV
KYAKKKKTSAVNQ*

LD23669.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-PC 413 CG8808-PC 1..413 1..413 2165 100 Plus
Pdk-PA 413 CG8808-PA 1..413 1..413 2165 100 Plus
Pdk-PB 422 CG8808-PB 1..410 1..410 2100 97.8 Plus
Pdk-PD 415 CG8808-PD 1..399 1..399 2097 100 Plus

LD23669.pep Sequence

Translation from 778 to 2019

> LD23669.pep
MRLFPVRFSAASSSMASLAKMLDFYSGFNPSPLSIKQFMDFGQNACEKKS
YIFLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWYVKSFEDVLVYE
KAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPTE
SSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSD
VVRDAYENARFLCDQYYLTSPALEIQQHSSEPGDNLPIRTVYVPSHLYYM
LFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIP
RSQTDQLFKYMYSTAPQPSKSDLHTVPLAGYGYGLPISRLYARYFHGDIV
LLSCEGFGTDAIIYLKALSDEANELLPIFNKTSSKFYRATVPTGDWSNQV
KYAKKKKTSAVNQ*

LD23669.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12464-PA 423 GF12464-PA 1..410 1..410 2128 95.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24073-PA 413 GG24073-PA 1..413 1..413 2220 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19919-PA 413 GH19919-PA 1..413 1..413 2011 91.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-PC 413 CG8808-PC 1..413 1..413 2165 100 Plus
Pdk-PA 413 CG8808-PA 1..413 1..413 2165 100 Plus
Pdk-PB 422 CG8808-PB 1..410 1..410 2100 97.8 Plus
Pdk-PD 415 CG8808-PD 1..399 1..399 2097 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19876-PA 411 GI19876-PA 1..411 1..413 1988 92.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17352-PA 423 GL17352-PA 1..411 1..411 1998 92.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30459-PD 414 GA30459-PD 1..411 1..411 2006 93.2 Plus
Dpse\GA30459-PC 423 GA30459-PC 1..411 1..411 1955 90.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21122-PA 422 GM21122-PA 1..411 1..411 2157 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10655-PA 564 GD10655-PA 341..553 199..411 1106 95.3 Plus
Dsim\GD10655-PA 564 GD10655-PA 1..180 1..180 895 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15047-PA 412 GJ15047-PA 1..412 1..413 2029 93.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15747-PA 422 GK15747-PA 1..411 1..411 1974 91.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19277-PA 413 GE19277-PA 1..413 1..413 2220 99.3 Plus