BDGP Sequence Production Resources |
Search the DGRC for LD23703
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 237 |
Well: | 3 |
Vector: | pOT2 |
Associated Gene/Transcript | Set-RA |
Protein status: | LD23703.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1165 |
Gene | Date | Evidence |
---|---|---|
CG4299 | 2001-01-01 | Release 2 assignment |
CG4299 | 2002-05-16 | Blastp of sequenced clone |
Set | 2008-04-29 | Release 5.5 accounting |
Set | 2008-08-15 | Release 5.9 accounting |
Set | 2008-12-18 | 5.12 accounting |
1165 bp (1165 high quality bases) assembled on 2002-05-16
GenBank Submission: AY118922
> LD23703.complete CAAACGAAAGGTTAAAAATCCGCTTCGCTTCTCTTCTGCTCAACTGTACC GCCGCTTTTTGTTCAAATATCTCGGGAATTACGAGCGTACACACAACGGA AGAGCGTGCAGAATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACGGCGC CCCCGCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAGGAGT CGGAGGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGCGCTG AACGAGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACAACAA GCTGCGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGCATCC CCAACTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGGCATT CTGGACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTGAGGT TGAGGAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCATTTCG ACGAGAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCACCTG AATTCAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCAGCAC GCCCATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTGACAA AGCCGTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTTCTTC GATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAGAACT GATAAAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTACCTG ATATCGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGATGAG GAGGCATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAGAGGA AGAGGATGAGGATGACAAGTAAACTGATTAATGCAATTTCAAATCGCTCG CAACCGAAGGCCCACATTGTTTATAACCACTGGCAACTATAGTTTTCCCG ATGGTTATGCAACATTTACATATTCGCAACGATTTAAGGACATATTTAGG TTTCGAAATAAGCAAAAGTCATACATCCATTAAAGAGCAGCAGAAAATGA GAATCACCATTAAATTAATTTAAAACAAATAAAAAGACGTAAATCGAAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Set-RA | 1283 | Set-RA | 81..1228 | 1..1148 | 5740 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11088205..11088574 | 1..370 | 1850 | 100 | Plus |
chr3R | 27901430 | chr3R | 11089234..11089585 | 560..911 | 1760 | 100 | Plus |
chr3R | 27901430 | chr3R | 11089648..11089883 | 911..1146 | 1180 | 100 | Plus |
chr3R | 27901430 | chr3R | 11088982..11089172 | 370..560 | 955 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15263575..15263944 | 1..370 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 15264604..15264955 | 560..911 | 1760 | 100 | Plus |
3R | 32079331 | 3R | 15265018..15265255 | 911..1148 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 15264352..15264542 | 370..560 | 955 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 15004406..15004775 | 1..370 | 1850 | 100 | Plus |
3R | 31820162 | 3R | 15005435..15005786 | 560..911 | 1760 | 100 | Plus |
3R | 31820162 | 3R | 15005849..15006086 | 911..1148 | 1190 | 100 | Plus |
3R | 31820162 | 3R | 15005183..15005373 | 370..560 | 955 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 7734..7807 | 238..309 | 112 | 64.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11089648..11089883 | 911..1146 | 100 | Plus | |
chr3R | 11088205..11088574 | 1..370 | 100 | -> | Plus |
chr3R | 11088983..11089172 | 371..560 | 100 | -> | Plus |
chr3R | 11089235..11089479 | 561..805 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 1..810 | 113..922 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 1..810 | 113..922 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 1..810 | 113..922 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 1..810 | 113..922 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 1..810 | 113..922 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 41..1186 | 1..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 41..1186 | 1..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 24..1169 | 1..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 41..1186 | 1..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Set-RA | 24..1169 | 1..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15263575..15263944 | 1..370 | 100 | -> | Plus |
3R | 15264353..15264542 | 371..560 | 100 | -> | Plus |
3R | 15264605..15264955 | 561..911 | 100 | -> | Plus |
3R | 15265019..15265253 | 912..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15263575..15263944 | 1..370 | 100 | -> | Plus |
3R | 15264353..15264542 | 371..560 | 100 | -> | Plus |
3R | 15264605..15264955 | 561..911 | 100 | -> | Plus |
3R | 15265019..15265253 | 912..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15263575..15263944 | 1..370 | 100 | -> | Plus |
3R | 15264353..15264542 | 371..560 | 100 | -> | Plus |
3R | 15264605..15264955 | 561..911 | 100 | -> | Plus |
3R | 15265019..15265253 | 912..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11089297..11089666 | 1..370 | 100 | -> | Plus |
arm_3R | 11090075..11090264 | 371..560 | 100 | -> | Plus |
arm_3R | 11090327..11090677 | 561..911 | 100 | -> | Plus |
arm_3R | 11090741..11090975 | 912..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15004406..15004775 | 1..370 | 100 | -> | Plus |
3R | 15005184..15005373 | 371..560 | 100 | -> | Plus |
3R | 15005436..15005786 | 561..911 | 100 | -> | Plus |
3R | 15005850..15006084 | 912..1146 | 100 | Plus |
Translation from 0 to 921
> LD23703.hyp KRKVKNPLRFSSAQLYRRFLFKYLGNYERTHNGRACRMSSVPKRAKLDGA PADGNTSAAAGNNEEESEALEQIDACQNEIDALNEKASEEILKVEQKYNK LRKPCYEKRSELVKRIPNFWVTSFINHPQVSGILDEEEEECLHALNKLEV EEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAAASENGDWPASTST PIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFSDNTDPVNDEIAEL IKDDLWPNPLQYYLVPDIEVEPEDEEDNEDNDEEAFDDEDGEDGEGEEEE EDEDDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Set-PA | 269 | CG4299-PA | 1..269 | 38..306 | 1438 | 100 | Plus |
Nap1-PC | 370 | CG5330-PC | 64..353 | 79..296 | 206 | 24.3 | Plus |
Nap1-PB | 370 | CG5330-PB | 64..353 | 79..296 | 206 | 24.3 | Plus |
Nap1-PA | 370 | CG5330-PA | 64..353 | 79..296 | 206 | 24.3 | Plus |
mil-PA | 283 | CG5017-PA | 28..283 | 64..306 | 168 | 22.7 | Plus |
Translation from 112 to 921
> LD23703.pep MSSVPKRAKLDGAPADGNTSAAAGNNEEESEALEQIDACQNEIDALNEKA SEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHPQVSGILDEE EEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAA ASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFS DNTDPVNDEIAELIKDDLWPNPLQYYLVPDIEVEPEDEEDNEDNDEEAFD DEDGEDGEGEEEEEDEDDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11410-PA | 273 | GF11410-PA | 1..233 | 1..229 | 1148 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16903-PA | 269 | GG16903-PA | 1..269 | 1..269 | 1363 | 97.8 | Plus |
Dere\GG19979-PA | 369 | GG19979-PA | 76..319 | 52..226 | 153 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18852-PA | 265 | GH18852-PA | 1..226 | 1..229 | 1087 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Set-PA | 269 | CG4299-PA | 1..269 | 1..269 | 1438 | 100 | Plus |
Nap1-PC | 370 | CG5330-PC | 64..353 | 42..259 | 206 | 24.3 | Plus |
Nap1-PB | 370 | CG5330-PB | 64..353 | 42..259 | 206 | 24.3 | Plus |
Nap1-PA | 370 | CG5330-PA | 64..353 | 42..259 | 206 | 24.3 | Plus |
mil-PA | 283 | CG5017-PA | 28..283 | 27..269 | 168 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22922-PA | 265 | GI22922-PA | 1..226 | 1..229 | 1125 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12537-PA | 266 | GL12537-PA | 1..226 | 1..229 | 1114 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18091-PA | 266 | GA18091-PA | 1..226 | 1..229 | 1115 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24211-PA | 269 | GM24211-PA | 1..269 | 1..269 | 1373 | 98.5 | Plus |
Dsec\GM15492-PA | 370 | GM15492-PA | 64..319 | 42..226 | 147 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19001-PA | 269 | GD19001-PA | 1..269 | 1..269 | 1377 | 98.9 | Plus |
Dsim\GD24995-PA | 370 | GD24995-PA | 64..319 | 42..226 | 147 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23206-PA | 265 | GJ23206-PA | 1..225 | 1..228 | 1116 | 94.7 | Plus |