Clone LD23718 Report

Search the DGRC for LD23718

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:237
Well:18
Vector:pOT2
Associated Gene/TranscriptCG8939-RA
Protein status:LD23718.pep: gold
Preliminary Size:2200
Sequenced Size:2620

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8939 2003-01-01 Sim4 clustering to Release 3
CG8939 2004-07-15 Blastp of sequenced clone
CG8939 2008-04-29 Release 5.5 accounting
CG8939 2008-08-15 Release 5.9 accounting
CG8939 2008-12-18 5.12 accounting

Clone Sequence Records

LD23718.complete Sequence

2620 bp (2620 high quality bases) assembled on 2004-07-15

GenBank Submission: AY069518

> LD23718.complete
CACACTGTTGGCAACACGTGCACGAATTCGACATTTGATTTGAATTCGTT
TTGATTTTTATCGTAATTGTACGAAAAGCCAGCAGCAATGGGCAAGAAGA
CGAAAGTTGGAAAGACGCGCAAGGATAAGTTCTACCAGTTGGCCAAGGAG
ACGGGCCTGCGATCGCGTGCCGCCTTCAAATTGATCCAGCTGAATCGCAA
ATTCGGTTTCCTCCAACAATCGCAAGTATGTTTGGATTTGTGCGCAGCTC
CCGGTGGCTGGATGCAGGTGGCCAAGCAGAATATGCCGGTGTCCAGCATT
GTGATCGGCGTGGATCTCTTTCCCATCCGTCCCATTGCCGGCTGCATTGG
TCTCGTCGAGGACATCACCACCGAGAAGTGCCGCCAATCGCTGACCAAGG
AGCTGCAATCGTGGAAGGCCGATGTTGTGCTCCACGACGGTGCTCCCAAT
GTGGGTAGGAACTGGCTGTACGATGCCTATCAGCAGATCTGTCTCACCCT
CAACGCGCTCAAGTTGAGCACACAGTTTCTGCGCAACGGCGGCTGGTTTG
TGACGAAGGTTTTCCGCTCCAAGGATTACAATGCCCTGCTCTGGGTGCTC
AAGCAGCTGTTCAAGAAGGTGCACGCCACCAAGCCGAGTGCGTCGCGTAA
GGAATCCGCCGAGATATTCGTCGTCTGTCAGGGCTACCTGGCGCCCGATC
ACATTGATCCCCGTCTCCTGGACTCGAAGTATGTGTTCGAGGAGCTGGAT
CTCGATGCCAAAAAGAAGAGCAGCCTGCTGCATCCCGAAAAGCAAAAGCG
CATCAAGGCCGAGGGCTATACGGCCCAGGATATTGCGCTGCGCAACGATC
TGGCTGCCACAGAGTTCCTGAAGGCTGAAAATGCACTGGCTGCGCTGCAG
GGCATCGGTTCGATTCGCATCGATGATCAGCGCATTGCCAATCACAAGAA
GACCACGCCAGAGATTCTCGAGTGCTGCAAGGATCTGAAGGTATTGGGCC
GCAAGGATATCAAGGGTCTCGTGCAATGGTGGAAGGATGTTAGGGAGTTG
TTCGTTGAAAAGGAAACCCCACTGGTCGTCGGCAATGCCGCAGATGAGAA
GCCCAAGCCATTGACGCAAGCGGAAATCGAGGACATGGAAGATGCCGAGC
TGCAAACGCAAATTGAGACAATTGTCGAAGAGGAGAAGAAGGACTTGAAG
CGTAAGCGTAAGAAGACGCTCAAGACCAAGGCGAAATTGCACGAGAAGAT
GAACCTTAATATGGTGATCAAGGGAGACGATGGTCCGGTCGAGGAAATGG
AGCACGAAATCTTTGACCTCAAGAATATTCGCACCTCTGCCGAGCTTGAC
GAGCTGCTAGACGTGCAACCCGATTTTGCTGTCGATGAATCGCAGCCCGA
GGAAACAAAGCTGCCAAAATACAAGTATTTCGACAAGGATGAGGGCAACA
TCAACGATGATCTAAACTATGACGATGACAATGATGAGGAGCAAAGCGAG
GCCTCCGACGACGAGGATCAAATCAATGATAAGCAGGGCCTGGGCCTCAG
TGACGACGACAATGATGAGGGCAATGCAAAGGGCAAAAACAAGAGAAAGA
AACGCTCCGAGAATCCGCTGATTAAATCCAATGATTTCCGTGACAAAAAC
ACCAAGCGAGAGCAACGCGTACAGCTGTGGTACGAGAAGGATGTACTACA
GAATATCCAGTCGGATGACGACGAGGAAACCTACGATCTGAACAATCTGG
CCAAGGAATTCAAGGCCAAGGGTGTCGCCGTTCTGGGTGAGAGCACCCTA
ACGCCGGACGCCAACGAGGAGGTTGTCCAGGGTAAGAAGGCCAAACGTCG
TGCACGCCATGAGACCGCAACTAAAGACAGCAGCTCAGAGTCATCCGAAT
CCGAGGATGACGCTAACGAGGATAGCGACGGCGAACAGCCAGCTGCAGGT
ACAAATGCCAAGAAGGTTCGCCTGTCCGAAAACGAAATGGCTTTGGGCGC
ACTGCTGACACGCAGCAAGAAGACACGCCGTGACTTGATCGACGCAGCCT
GGAATCGCTACGCTTTCAACGATGAGAACGTTCCCGTTTGGTTCAAGCTC
GATGAGGACGAGCATATGACCAAGCCAACACCGGTGCCGAAGGAGCTGAC
CGCCGAGTACCAGCGCAAGTTGCAGGAGGTGAACGTGCGTCCGATCAAGA
AGGTCATGGAGGCCAAGGCGCGCAAGCATCGTCGTGCCACGAAACGCTTG
GCCAAGGCTAAGAAGATGGCCGAAAAGATTATGGAGAACAGCGATGCCAC
CAACCACGAGAAGTCCAAGCAACTGAAGAAGGTGTACAAGAAGGCTCAGG
AGAAGAAGAAGGAGGTCACATATGTGGTGGCCAAGAAGCAGACAGCAGCT
CGACGCGCACGTCGTCCAGCTGGCGTCAAGGGTCGCTATAAGGTCGTCGA
TCCGCGCGAGAAGAAGGACAAGCGGTCAATGGATGCAAAGAAGAGGCGCG
AAAAGGGTTCGAAGGGTCGCAAGGGGAAGGGGCGTAAATAAATGTAAATC
TAAAAAATAAATATGTAATATTTTATAGATACTAAATATATATATAAAAC
GAAAAAAAAAAAAAAAAAAA

LD23718.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8939-RA 2719 CG8939-RA 20..2622 1..2603 13015 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15886884..15888833 1..1950 9645 99.6 Plus
chrX 22417052 chrX 15888890..15889545 1946..2601 3265 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15997037..15998986 1..1950 9750 100 Plus
X 23542271 X 15999043..15999700 1946..2603 3290 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16005135..16007084 1..1950 9750 100 Plus
X 23527363 X 16007141..16007798 1946..2603 3290 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:25:08 has no hits.

LD23718.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:55 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15886884..15888831 1..1948 99 -> Plus
chrX 15888893..15889478 1949..2534 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:49 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 1..2454 88..2541 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:33:40 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 1..2454 88..2541 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:56 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 1..2454 88..2541 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:17:49 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 1..2454 88..2541 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:12 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 1..2454 88..2541 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:39:57 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 1..2601 1..2601 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:33:40 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 1..2601 1..2601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:56 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 22..2622 1..2601 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:17:49 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 1..2601 1..2601 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:12 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG8939-RA 22..2622 1..2601 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:55 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
X 15997037..15998984 1..1948 100 -> Plus
X 15999046..15999698 1949..2601 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:55 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
X 15997037..15998984 1..1948 100 -> Plus
X 15999046..15999698 1949..2601 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:55 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
X 15997037..15998984 1..1948 100 -> Plus
X 15999046..15999698 1949..2601 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:56 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15891070..15893017 1..1948 100 -> Plus
arm_X 15893079..15893731 1949..2601 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:54:39 Download gff for LD23718.complete
Subject Subject Range Query Range Percent Splice Strand
X 16005135..16007082 1..1948 100 -> Plus
X 16007144..16007796 1949..2601 100   Plus

LD23718.hyp Sequence

Translation from 87 to 2540

> LD23718.hyp
MGKKTKVGKTRKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLD
LCAAPGGWMQVAKQNMPVSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQ
SLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLRN
GGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASRKESAEIFVVCQGY
LAPDHIDPRLLDSKYVFEELDLDAKKKSSLLHPEKQKRIKAEGYTAQDIA
LRNDLAATEFLKAENALAALQGIGSIRIDDQRIANHKKTTPEILECCKDL
KVLGRKDIKGLVQWWKDVRELFVEKETPLVVGNAADEKPKPLTQAEIEDM
EDAELQTQIETIVEEEKKDLKRKRKKTLKTKAKLHEKMNLNMVIKGDDGP
VEEMEHEIFDLKNIRTSAELDELLDVQPDFAVDESQPEETKLPKYKYFDK
DEGNINDDLNYDDDNDEEQSEASDDEDQINDKQGLGLSDDDNDEGNAKGK
NKRKKRSENPLIKSNDFRDKNTKREQRVQLWYEKDVLQNIQSDDDEETYD
LNNLAKEFKAKGVAVLGESTLTPDANEEVVQGKKAKRRARHETATKDSSS
ESSESEDDANEDSDGEQPAAGTNAKKVRLSENEMALGALLTRSKKTRRDL
IDAAWNRYAFNDENVPVWFKLDEDEHMTKPTPVPKELTAEYQRKLQEVNV
RPIKKVMEAKARKHRRATKRLAKAKKMAEKIMENSDATNHEKSKQLKKVY
KKAQEKKKEVTYVVAKKQTAARRARRPAGVKGRYKVVDPREKKDKRSMDA
KKRREKGSKGRKGKGRK*

LD23718.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8939-PA 817 CG8939-PA 1..817 1..817 4210 100 Plus
CG7009-PA 320 CG7009-PA 1..234 7..229 346 38.5 Plus
CG5220-PA 302 CG5220-PA 1..219 7..212 315 36.1 Plus
CG11447-PA 250 CG11447-PA 48..244 13..200 200 29.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4240..4822 213..809 180 22 Plus

LD23718.pep Sequence

Translation from 87 to 2540

> LD23718.pep
MGKKTKVGKTRKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLD
LCAAPGGWMQVAKQNMPVSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQ
SLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLRN
GGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASRKESAEIFVVCQGY
LAPDHIDPRLLDSKYVFEELDLDAKKKSSLLHPEKQKRIKAEGYTAQDIA
LRNDLAATEFLKAENALAALQGIGSIRIDDQRIANHKKTTPEILECCKDL
KVLGRKDIKGLVQWWKDVRELFVEKETPLVVGNAADEKPKPLTQAEIEDM
EDAELQTQIETIVEEEKKDLKRKRKKTLKTKAKLHEKMNLNMVIKGDDGP
VEEMEHEIFDLKNIRTSAELDELLDVQPDFAVDESQPEETKLPKYKYFDK
DEGNINDDLNYDDDNDEEQSEASDDEDQINDKQGLGLSDDDNDEGNAKGK
NKRKKRSENPLIKSNDFRDKNTKREQRVQLWYEKDVLQNIQSDDDEETYD
LNNLAKEFKAKGVAVLGESTLTPDANEEVVQGKKAKRRARHETATKDSSS
ESSESEDDANEDSDGEQPAAGTNAKKVRLSENEMALGALLTRSKKTRRDL
IDAAWNRYAFNDENVPVWFKLDEDEHMTKPTPVPKELTAEYQRKLQEVNV
RPIKKVMEAKARKHRRATKRLAKAKKMAEKIMENSDATNHEKSKQLKKVY
KKAQEKKKEVTYVVAKKQTAARRARRPAGVKGRYKVVDPREKKDKRSMDA
KKRREKGSKGRKGKGRK*

LD23718.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10393-PA 817 GF10393-PA 1..795 1..800 3006 76.7 Plus
Dana\GF23069-PA 405 GF23069-PA 1..209 7..204 366 38.8 Plus
Dana\GF17080-PA 301 GF17080-PA 1..222 7..213 329 36.5 Plus
Dana\GF17621-PA 254 GF17621-PA 48..244 13..200 194 29.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17939-PA 816 GG17939-PA 1..799 1..800 3753 95.9 Plus
Dere\GG14838-PA 321 GG14838-PA 1..213 7..208 358 40.8 Plus
Dere\GG21940-PA 300 GG21940-PA 1..219 7..212 333 36.1 Plus
Dere\GG23538-PA 250 GG23538-PA 48..244 13..200 198 30.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17878-PA 836 GH17878-PA 1..815 1..804 2894 75.4 Plus
Dgri\GH18555-PA 356 GH18555-PA 1..221 7..215 372 40.3 Plus
Dgri\GH14141-PA 311 GH14141-PA 1..221 7..212 330 36.2 Plus
Dgri\GH16178-PA 249 GH16178-PA 50..246 13..200 180 28.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8939-PA 817 CG8939-PA 1..817 1..817 4210 100 Plus
CG7009-PA 320 CG7009-PA 1..234 7..229 346 38.5 Plus
CG5220-PA 302 CG5220-PA 1..219 7..212 315 36.1 Plus
CG11447-PA 250 CG11447-PA 48..244 13..200 200 29.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4240..4822 213..809 180 22 Plus
Strn-Mlck-PV 7944 CG44162-PV 4279..4861 213..809 180 22 Plus
Strn-Mlck-PS 8216 CG44162-PS 4240..4822 213..809 180 22 Plus
Strn-Mlck-PU 8255 CG44162-PU 4279..4861 213..809 180 22 Plus
rudhira-PE 2075 CG43154-PE 1140..1656 316..812 170 20.4 Plus
rudhira-PC 2075 CG43154-PC 1140..1656 316..812 170 20.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 3718..4302 210..809 164 20 Plus
Strn-Mlck-PV 7944 CG44162-PV 3757..4341 210..809 164 20 Plus
Strn-Mlck-PS 8216 CG44162-PS 3718..4302 210..809 164 20 Plus
Strn-Mlck-PU 8255 CG44162-PU 3757..4341 210..809 164 20 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16447-PA 826 GI16447-PA 1..812 1..805 3036 76.9 Plus
Dmoj\GI24754-PA 382 GI24754-PA 1..216 1..210 384 41.1 Plus
Dmoj\GI10674-PA 305 GI10674-PA 1..221 7..212 323 35.7 Plus
Dmoj\GI22429-PA 254 GI22429-PA 50..251 13..203 184 30 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13168-PA 189 GL13168-PA 1..178 627..804 734 79.2 Plus
Dper\GL12002-PA 316 GL12002-PA 1..220 7..215 363 40.5 Plus
Dper\GL24549-PA 304 GL24549-PA 1..222 7..213 310 35.6 Plus
Dper\GL12202-PA 249 GL12202-PA 47..243 13..200 196 30.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23163-PA 139 GA23163-PA 1..128 677..804 522 81.2 Plus
Dpse\GA20027-PA 316 GA20027-PA 1..220 7..215 360 40 Plus
Dpse\GA18746-PA 304 GA18746-PA 1..222 7..213 308 35.6 Plus
Dpse\GA23223-PA 232 GA23223-PA 1..136 80..215 205 36 Plus
Dpse\GA11008-PA 249 GA11008-PA 47..243 13..200 197 30.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11680-PA 817 GM11680-PA 1..817 1..817 4257 98.4 Plus
Dsec\GM15097-PA 321 GM15097-PA 1..220 7..215 366 40 Plus
Dsec\GM15199-PA 302 GM15199-PA 1..219 7..212 344 37 Plus
Dsec\GM26867-PA 250 GM26867-PA 48..244 13..200 199 30.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24825-PA 353 GD24825-PA 11..353 475..817 1729 98 Plus
Dsim\GD17262-PA 204 GD17262-PA 1..188 1..188 981 95.2 Plus
Dsim\GD19132-PA 302 GD19132-PA 1..219 7..212 341 36.5 Plus
Dsim\GD19317-PA 250 GD19317-PA 48..244 13..200 202 31 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15847-PA 831 GJ15847-PA 1..814 1..805 3069 77.8 Plus
Dvir\GJ22540-PA 316 GJ22540-PA 1..216 1..210 387 40.6 Plus
Dvir\GJ23026-PA 313 GJ23026-PA 1..221 7..212 353 37.6 Plus
Dvir\GJ10992-PA 254 GJ10992-PA 50..252 13..206 191 29.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19748-PA 824 GK19748-PA 1..806 1..805 3093 79.8 Plus
Dwil\GK22383-PA 305 GK22383-PA 1..221 7..215 357 39.8 Plus
Dwil\GK16249-PA 306 GK16249-PA 1..221 7..212 331 36.2 Plus
Dwil\GK22358-PA 249 GK22358-PA 50..246 13..200 199 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17245-PA 819 GE17245-PA 1..802 1..800 3700 94.9 Plus
Dyak\GE25011-PA 318 GE25011-PA 1..213 7..208 348 40.4 Plus
Dyak\GE24604-PA 302 GE24604-PA 1..219 7..212 325 35.6 Plus
Dyak\GE11211-PA 250 GE11211-PA 48..244 13..200 190 29.9 Plus
Dyak\GE25629-PA 250 GE25629-PA 48..244 13..200 189 29.9 Plus