BDGP Sequence Production Resources |
Search the DGRC for LD23740
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 237 |
Well: | 40 |
Vector: | pOT2 |
Associated Gene/Transcript | SdhB-RA |
Protein status: | LD23740.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1247 |
Gene | Date | Evidence |
---|---|---|
CG3283 | 2001-01-01 | Release 2 assignment |
CG3283 | 2002-05-15 | Blastp of sequenced clone |
CG3283 | 2003-01-01 | Sim4 clustering to Release 3 |
SdhB | 2008-04-29 | Release 5.5 accounting |
SdhB | 2008-08-15 | Release 5.9 accounting |
SdhB | 2008-12-18 | 5.12 accounting |
1247 bp (1247 high quality bases) assembled on 2002-05-15
GenBank Submission: AY118923
> LD23740.complete CCACACTGCACCCTCAGTTTCGTGCAACTTTTTGTACGCAAATAAGAAAA ACATTAAATTTGCTCTCAGCAAATCGATAATTGCAAACGCAGTGCCGTTT CAATTGCAGCACAAACCGCAACGAAAATGTTGGCGACCGAGGCGAGACAG ATCCTGAGCCGCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCAT CAGCAATGGCACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCC AGGAGCCGCAGATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAAC GCCGGCGAGAAGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTG CGGCCCCATGGTGCTGGACGCGCTGATCAAGATCAAGAACGAGATGGACC CCACGCTCACCTTTAGGCGCTCCTGTCGCGAGGGCATCTGCGGCTCCTGC GCCATGAACATCGGCGGCACCAACACGCTGGCCTGCATCAGCAAGATCGA CATCAACACCTCCAAGTCGCTGAAGGTGTACCCGCTGCCCCATATGTACG TGGTGCGCGACCTGGTCCCGGACATGAACAACTTCTACGAGCAGTACCGC AACATCCAGCCCTGGCTGCAGCGCAAGAACGAAGCGGGCGAGAAGAAGGG CAAGGCCCAGTACCTGCAGTCCGTCGAGGATCGCTCCAAGTTGGACGGCC TGTACGAGTGCATCCTGTGCGCCTGCTGCTCCACCTCGTGCCCCTCGTAC TGGTGGAACGCCGAGAAGTACCTGGGCCCCGCCGTGCTGATGCAGGCCTA CCGCTGGATCATCGACTCGCGTGACGAGAACTCCGCCGAGCGTCTGAACA AGTTGAAGGACCCCTTCAGCGTCTACCGGTGCCACACGATCATGAACTGC ACGCGCACCTGCCCCAAGGGGCTCAATCCCGGCCGTGCCATCGCCGAGAT CAAGAAGCTGCTCTCGGGCCTGGCCTCCAAGCCGGCTCCGAAGCTGGAGA CGGCGGCGCTGCACAAGTAGGGCCCAAGTCCTCTACTCCCAGTTCGTCCC CTGCTGTCCTTAACCAGTGAGCTAAGCCTCCGAAAATGTGTATTGGAGAC TCCTCCAGCCAACATGCTTACTATGTTATAATTTATTTAAGCCTAAAGTA TCCGACACTTGTTATTACAGTTTGTAAAGGGAACAAGACGCGAAAATAAA TAATTGTGTATCCACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SdhB-RA | 1306 | SdhB-RA | 29..1245 | 1..1217 | 6085 | 100 | Plus |
SdhB.a | 1287 | SdhB.a | 257..1287 | 187..1217 | 5155 | 100 | Plus |
SdhB.a | 1287 | SdhB.a | 19..207 | 1..189 | 945 | 100 | Plus |
CG7349-RA | 1903 | CG7349-RA | 767..942 | 311..486 | 595 | 89.2 | Plus |
CG7349-RA | 1903 | CG7349-RA | 1145..1281 | 692..828 | 340 | 83.2 | Plus |
CG7349-RA | 1903 | CG7349-RA | 991..1083 | 535..627 | 240 | 83.8 | Plus |
CG7349-RA | 1903 | CG7349-RA | 1327..1382 | 874..929 | 145 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2695819..2696412 | 623..1216 | 2955 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 2695327..2695767 | 187..627 | 2205 | 100 | Plus |
chr2R | 21145070 | chr2R | 2694869..2695057 | 1..189 | 945 | 100 | Plus |
chrX | 22417052 | chrX | 18784521..18785019 | 311..812 | 845 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 6808579..6809173 | 623..1217 | 2960 | 99.8 | Plus |
2R | 25286936 | 2R | 6808087..6808527 | 187..627 | 2205 | 100 | Plus |
2R | 25286936 | 2R | 6807629..6807817 | 1..189 | 945 | 100 | Plus |
X | 23542271 | X | 18895391..18895889 | 311..812 | 845 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 6809778..6810372 | 623..1217 | 2960 | 99.8 | Plus |
2R | 25260384 | 2R | 6809286..6809726 | 187..627 | 2205 | 100 | Plus |
2R | 25260384 | 2R | 6808828..6809016 | 1..189 | 945 | 100 | Plus |
X | 23527363 | X | 18903489..18903664 | 311..486 | 595 | 89.2 | Plus |
X | 23527363 | X | 18903867..18903987 | 692..812 | 335 | 85.1 | Plus |
X | 23527363 | X | 18903713..18903805 | 535..627 | 240 | 83.8 | Plus |
X | 23527363 | X | 18904105..18904160 | 874..929 | 145 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
INE-1 | 611 | INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). | 450..491 | 79..40 | 115 | 78.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2694869..2695057 | 1..189 | 100 | -> | Plus |
chr2R | 2695330..2695766 | 190..626 | 100 | -> | Plus |
chr2R | 2695823..2696412 | 627..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 1..894 | 127..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 1..894 | 127..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 1..894 | 127..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 1..894 | 127..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 1..894 | 127..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 19..1234 | 1..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 18..1233 | 1..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 4..1219 | 1..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 19..1234 | 1..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhB-RA | 4..1219 | 1..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6807629..6807817 | 1..189 | 100 | -> | Plus |
2R | 6808090..6808526 | 190..626 | 100 | -> | Plus |
2R | 6808583..6809172 | 627..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6807629..6807817 | 1..189 | 100 | -> | Plus |
2R | 6808090..6808526 | 190..626 | 100 | -> | Plus |
2R | 6808583..6809172 | 627..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6807629..6807817 | 1..189 | 100 | -> | Plus |
2R | 6808090..6808526 | 190..626 | 100 | -> | Plus |
2R | 6808583..6809172 | 627..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2695134..2695322 | 1..189 | 100 | -> | Plus |
arm_2R | 2695595..2696031 | 190..626 | 100 | -> | Plus |
arm_2R | 2696088..2696677 | 627..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6809289..6809725 | 190..626 | 100 | -> | Plus |
2R | 6809782..6810371 | 627..1216 | 100 | Plus | |
2R | 6808828..6809016 | 1..189 | 100 | -> | Plus |
Translation from 126 to 1019
> LD23740.pep MLATEARQILSRVGSLVARNQMRAISNGTAQLEQQAQPKEAQEPQIKKFE IYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSC REGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDM NNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCAC CSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVY RCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLASKPAPKLETAALHK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11072-PA | 297 | GF11072-PA | 1..297 | 1..297 | 1536 | 95.3 | Plus |
Dana\GF19050-PA | 444 | GF19050-PA | 193..441 | 45..297 | 984 | 69.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23224-PA | 297 | GG23224-PA | 1..297 | 1..297 | 1573 | 98 | Plus |
Dere\GG19200-PA | 412 | GG19200-PA | 156..407 | 40..295 | 1024 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21756-PA | 296 | GH21756-PA | 1..296 | 1..297 | 1485 | 91.9 | Plus |
Dgri\GH10931-PA | 335 | GH10931-PA | 60..330 | 21..295 | 997 | 63.3 | Plus |
Dgri\GH24727-PA | 331 | GH24727-PA | 78..326 | 43..295 | 971 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SdhB-PA | 297 | CG3283-PA | 1..297 | 1..297 | 1586 | 100 | Plus |
SdhBL-PC | 437 | CG7349-PC | 175..432 | 34..295 | 1032 | 71.8 | Plus |
SdhBL-PA | 437 | CG7349-PA | 175..432 | 34..295 | 1032 | 71.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19303-PA | 296 | GI19303-PA | 1..296 | 1..297 | 1499 | 92.9 | Plus |
Dmoj\GI14882-PA | 362 | GI14882-PA | 112..332 | 42..266 | 916 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11120-PA | 297 | GL11120-PA | 1..297 | 1..297 | 1516 | 92.9 | Plus |
Dper\GL21331-PA | 375 | GL21331-PA | 118..372 | 38..296 | 1020 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17170-PA | 297 | GA17170-PA | 1..297 | 1..297 | 1516 | 92.9 | Plus |
Dpse\GA20284-PA | 371 | GA20284-PA | 121..368 | 45..296 | 1002 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20899-PA | 297 | GM20899-PA | 1..297 | 1..297 | 1592 | 99.7 | Plus |
Dsec\GM22932-PA | 440 | GM22932-PA | 184..435 | 40..295 | 1033 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10425-PA | 297 | GD10425-PA | 1..297 | 1..297 | 1599 | 100 | Plus |
Dsim\GD17417-PA | 462 | GD17417-PA | 206..457 | 40..295 | 1031 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22180-PA | 296 | GJ22180-PA | 1..296 | 1..297 | 1467 | 90.6 | Plus |
Dvir\GJ15311-PA | 382 | GJ15311-PA | 117..379 | 36..297 | 997 | 67.4 | Plus |
Translation from 126 to 1019
> LD23740.hyp MLATEARQILSRVGSLVARNQMRAISNGTAQLEQQAQPKEAQEPQIKKFE IYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSC REGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDM NNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCAC CSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVY RCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLASKPAPKLETAALHK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SdhB-PA | 297 | CG3283-PA | 1..297 | 1..297 | 1586 | 100 | Plus |
CG7349-PC | 437 | CG7349-PC | 175..432 | 34..295 | 1032 | 71.8 | Plus |
CG7349-PA | 437 | CG7349-PA | 175..432 | 34..295 | 1032 | 71.8 | Plus |