Clone LD23744 Report

Search the DGRC for LD23744

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:237
Well:44
Vector:pOT2
Associated Gene/TranscriptCG7173-RA
Protein status:LD23744.pep: gold
Preliminary Size:2200
Sequenced Size:1736

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7173 2001-01-01 Release 2 assignment
CG7173 2002-06-12 Blastp of sequenced clone
CG7173 2003-01-01 Sim4 clustering to Release 3
CG7173 2008-04-29 Release 5.5 accounting
CG7173 2008-08-15 Release 5.9 accounting
CG7173 2008-12-18 5.12 accounting

Clone Sequence Records

LD23744.complete Sequence

1736 bp (1736 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122164

> LD23744.complete
AACGAAGACGAGCTTTAAAAATGACTCAGAGTCCGCTTAAGTTGGCCCCC
ATTTTGGAGGCCCTAGTTCTGATAGTGGTCCTAATCAACCAAGTGCAGTG
CGGTGAGAATGATATGAGACAAGCGCGCATAAGGCAGTTTCTGAGTGAGA
ACCAGCCCCTGGCCCAGCACCATATCAAGCACAATCGGCCGCCGGGTCCC
GGACAACTGCCCCGGATAAGATCGCGATCGGATAACCTGGCCATGCTTTC
TGGTGGCTCCAACAAGTTCTTGCGGTCGCCGCAACCTGCCACTGCGCAGC
ACATCATGCGTCGCGAGCAGTTCGGGAACTTTCCTGCGAACGACCAGCTC
AGGAGGTACCAGTTCGACCAGAGTCAGCAGGGCAGATTCGCCCACGTAAA
GGACACTCCGGTGCTAGATGTGGGCAAAAACCAGTTCCCACTCCAGTATG
TCTCCGAGCAGTACATTCAGAACTTCAAGTCCTCGCCGCGCTTCAATGGC
AATGTGATCATGAAGGACACCAAGCCAGTGTACGCACCCATCCAACAGCA
TGCGATTCCCGTCCAGGCCTCCCAGTACCTGCACTATCCCAAGCTCTTCG
GACAGCAGGGATCTCCCAGTTTCAGTGTTGTCCCTACCCAGCAAACTGCT
CTCCAAAACAGCCAGTTTCCCCAGGATCCAAATAGCTACTCTGTCTACGA
GGATACCGATATACCTGCGAAGCAGGCGGTAAACTTTCGCCAGGCAGTGC
CACCACCAAAGGAGTCCAGGGAGGCGCAGGACTACCTGCAATTCATGAGC
ACCAACGAGTACTTCCTGCCCAAGAGGGATCCTGACTTCAAGAAACTGGA
CGCCGAGCGGGACCAGCAGAAGCTGCTCCACCAATATCCACAGCAATACA
GACAGCAGCAGCAGCAGCAACTGTATCAGCAACAACAGCAGCAGCATCAG
CAACCGCAGCACCAGCAGCCGCAGCAGCAACAAGCGCTGCAGCAACATGT
TCCCTACAAAACTGCTGGCCTAGACAACTCAGTCTCCTCCAGTTACAATG
AGCCCATACAAGTGTCCGACTTGTTCTACCAGCAAGATCCCGCTCCTGCG
AATTCCGCAGTGGTTCGCGGCAGTTACCAGGCAGGTCAGGATGTCTTCGT
TGTCAAGTCCGACGGCAACAAAGCCGTTAAGCATGTGGTCTCTACTCCCA
TGGCGGTCCAGACCACCACTCAATCGCCGTCGAAGAGCCAGCACCTCGCC
AAGACCCACAAGAGCTTTACCCCGGAGCCTCTGCGATTCGAGTTCACCGA
GCAAGATGCCATAAGGGGATCGATGAAGTACACCCAAGCCCCGCAAGCCA
ATCAGTACTACTACGAAACCGTGGCCCAAGCTCCCCGCGAGCCCGCGAAA
TCTCCTGCCCCGAAGATTGAACTCAGCAAGCCCATTAAGGAATACACCGA
TGACCCAGAGGATAGTTCCGACACTGAAAGTGGAAAGCAGCAAGATATTC
CAAAGGTGCCCACTGTGACGAGTTCAGCTACTCCTGACGATCCAAAGGAC
ACGGAAAACTACTGCGAGAAGATATGTGCTAATGTGTACGATGAAAACGA
TGAAATAATCTGTGGATCCGACGGATACATGTACACGGGCGAAACCCAAC
TGCAGTGCTATTCGTCATGCCTCAATATAAGTGTGACGATTAAGAGTAAA
GGATCTTGCTCTTAAACTAAAAAAAAAAAAAAAAAA

LD23744.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7173-RA 2587 CG7173-RA 591..2324 1..1734 8640 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21545227..21546716 1490..1 7450 100 Minus
chr3L 24539361 chr3L 21544686..21544880 1682..1488 975 100 Minus
chr3L 24539361 chr3L 21544584..21544621 1718..1681 190 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21556291..21557780 1490..1 7450 100 Minus
3L 28110227 3L 21555750..21555944 1682..1488 975 100 Minus
3L 28110227 3L 21555632..21555685 1734..1681 240 96.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21549391..21550880 1490..1 7450 100 Minus
3L 28103327 3L 21548850..21549044 1682..1488 975 100 Minus
3L 28103327 3L 21548732..21548785 1734..1681 240 96.2 Minus
Blast to na_te.dros performed 2019-03-16 10:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 1627..1691 503..562 115 69.2 Plus

LD23744.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:28:41 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21544584..21544621 1681..1718 97 <- Minus
chr3L 21544688..21544877 1491..1680 100 <- Minus
chr3L 21545227..21545733 984..1490 100 == Minus
chr3L 21545827..21546716 1..890 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:53 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 1..1695 21..1715 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:37 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 1..1695 21..1715 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:01:48 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 1..1695 21..1715 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:23 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 1..1695 21..1715 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:40 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 1..1695 21..1715 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:49:23 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 442..2159 1..1718 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:37 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 442..2159 1..1718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:01:48 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 447..2164 1..1718 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:23 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 442..2159 1..1718 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:40 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
CG7173-RA 447..2164 1..1718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:41 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21555648..21555685 1681..1718 100 <- Minus
3L 21555752..21555941 1491..1680 100 <- Minus
3L 21556291..21557780 1..1490 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:41 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21555648..21555685 1681..1718 100 <- Minus
3L 21555752..21555941 1491..1680 100 <- Minus
3L 21556291..21557780 1..1490 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:41 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21555648..21555685 1681..1718 100 <- Minus
3L 21555752..21555941 1491..1680 100 <- Minus
3L 21556291..21557780 1..1490 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:01:48 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21548748..21548785 1681..1718 100 <- Minus
arm_3L 21548852..21549041 1491..1680 100 <- Minus
arm_3L 21549391..21550880 1..1490 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:46:10 Download gff for LD23744.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21549391..21550880 1..1490 100   Minus
3L 21548748..21548785 1681..1718 100 <- Minus
3L 21548852..21549041 1491..1680 100 <- Minus

LD23744.hyp Sequence

Translation from 2 to 1714

> LD23744.hyp
RRRALKMTQSPLKLAPILEALVLIVVLINQVQCGENDMRQARIRQFLSEN
QPLAQHHIKHNRPPGPGQLPRIRSRSDNLAMLSGGSNKFLRSPQPATAQH
IMRREQFGNFPANDQLRRYQFDQSQQGRFAHVKDTPVLDVGKNQFPLQYV
SEQYIQNFKSSPRFNGNVIMKDTKPVYAPIQQHAIPVQASQYLHYPKLFG
QQGSPSFSVVPTQQTALQNSQFPQDPNSYSVYEDTDIPAKQAVNFRQAVP
PPKESREAQDYLQFMSTNEYFLPKRDPDFKKLDAERDQQKLLHQYPQQYR
QQQQQQLYQQQQQQHQQPQHQQPQQQQALQQHVPYKTAGLDNSVSSSYNE
PIQVSDLFYQQDPAPANSAVVRGSYQAGQDVFVVKSDGNKAVKHVVSTPM
AVQTTTQSPSKSQHLAKTHKSFTPEPLRFEFTEQDAIRGSMKYTQAPQAN
QYYYETVAQAPREPAKSPAPKIELSKPIKEYTDDPEDSSDTESGKQQDIP
KVPTVTSSATPDDPKDTENYCEKICANVYDENDEIICGSDGYMYTGETQL
QCYSSCLNISVTIKSKGSCS*

LD23744.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7173-PA 564 CG7173-PA 1..564 7..570 2970 100 Plus
ptip-PA 2294 CG32133-PA 210..467 286..517 167 26.7 Plus
ptip-PA 2294 CG32133-PA 851..1226 9..361 163 25.3 Plus

LD23744.pep Sequence

Translation from 20 to 1714

> LD23744.pep
MTQSPLKLAPILEALVLIVVLINQVQCGENDMRQARIRQFLSENQPLAQH
HIKHNRPPGPGQLPRIRSRSDNLAMLSGGSNKFLRSPQPATAQHIMRREQ
FGNFPANDQLRRYQFDQSQQGRFAHVKDTPVLDVGKNQFPLQYVSEQYIQ
NFKSSPRFNGNVIMKDTKPVYAPIQQHAIPVQASQYLHYPKLFGQQGSPS
FSVVPTQQTALQNSQFPQDPNSYSVYEDTDIPAKQAVNFRQAVPPPKESR
EAQDYLQFMSTNEYFLPKRDPDFKKLDAERDQQKLLHQYPQQYRQQQQQQ
LYQQQQQQHQQPQHQQPQQQQALQQHVPYKTAGLDNSVSSSYNEPIQVSD
LFYQQDPAPANSAVVRGSYQAGQDVFVVKSDGNKAVKHVVSTPMAVQTTT
QSPSKSQHLAKTHKSFTPEPLRFEFTEQDAIRGSMKYTQAPQANQYYYET
VAQAPREPAKSPAPKIELSKPIKEYTDDPEDSSDTESGKQQDIPKVPTVT
SSATPDDPKDTENYCEKICANVYDENDEIICGSDGYMYTGETQLQCYSSC
LNISVTIKSKGSCS*

LD23744.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10702-PA 587 GF10702-PA 6..587 7..564 1977 69.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13222-PA 563 GG13222-PA 1..563 1..564 2469 88.2 Plus
Dere\GG23106-PA 96 GG23106-PA 1..96 32..131 380 76 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14792-PA 552 GH14792-PA 27..552 29..564 1054 46.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7173-PA 564 CG7173-PA 1..564 1..564 2970 100 Plus
Ptip-PA 2294 CG32133-PA 210..467 280..511 167 26.7 Plus
Ptip-PA 2294 CG32133-PA 851..1226 3..355 163 25.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11845-PA 530 GI11845-PA 33..530 33..564 967 46.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25173-PA 476 GL25173-PA 265..476 360..564 674 66.5 Plus
Dper\GL25173-PA 476 GL25173-PA 1..265 1..242 450 43.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20154-PA 628 GA20154-PA 375..628 324..564 814 65.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22128-PA 584 GM22128-PA 347..584 327..564 1237 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12107-PA 572 GD12107-PA 1..572 1..564 2598 91.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13544-PA 541 GJ13544-PA 1..541 12..564 1002 47.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20349-PA 590 GK20349-PA 1..589 19..563 1133 48.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22977-PA 576 GE22977-PA 1..576 1..564 2489 88.4 Plus
Dyak\GE22316-PA 576 GE22316-PA 1..576 1..564 2479 88.1 Plus