Clone LD23804 Report

Search the DGRC for LD23804

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:238
Well:4
Vector:pOT2
Associated Gene/TranscriptCG7946-RA
Protein status:LD23804.pep: gold
Preliminary Size:2200
Sequenced Size:1859

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7946 2001-01-01 Release 2 assignment
CG7946 2001-07-04 Blastp of sequenced clone
CG7946 2003-01-01 Sim4 clustering to Release 3
CG7946 2008-04-29 Release 5.5 accounting
CG7946 2008-08-15 Release 5.9 accounting
CG7946 2008-12-18 5.12 accounting

Clone Sequence Records

LD23804.complete Sequence

1859 bp (1859 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051690

> LD23804.complete
AAAAGAAGAAAAGCAGACGCCGCAGAAATACGGCAAAAGATATTGGTATT
GCACGCGAACCAAACGAGCTAGAAGTCAAACGAAATGGGTAAGGAAAAGG
CGGCCGCCTCCTACAGCATTGGCGACCTGGTGTTCGCCAAGGTGAAGGGC
TATCCGCCCTGGCCGGCCAAAATCACCAAGAGCAACAACAACAAGAAGTA
CAATGTTTACTTCTACGGCACGGGCGAAACGGCCAACATCAAGTTGGAGG
ATCTGTTCCCGTACGCCAGCAACAAGGAGCGCTTCGCCACCGAGAAGATC
ATGAAGCGGGCCAAGTTCATCGAGGCCATCGATCAGATCGAGAGCGCCTT
GCGCGGCGAGGACTCGGCGCCCATTGATTTGCTCGACGGCGCGGAGCCAG
TTGCTCCGCCCACAACTGGTGATGGCGTCAAGACGGAGGAGCCCAAGCCG
GAGCCGGGACCGGAGCCAGCCACTGCTGCACCAGTCGCAGCAGCGGCCGA
GAAGCCCAAGAAGAGCGGCACCCGGAAGACCAAGGCACCACCGCGCCATG
TGGACGGGGATAGTGAAGCAGGCGCGGAACTAGCACCTCCGCCGGCCAAG
CGAAGGGTTCCCACCGAGGGTCTGGCTACCGCCGCAGCCATCCCCGCTGC
TCCGGCTGCGGCGACCCCCACCTCCAGCAAGAAATCAGTGAAGAAATCCA
AGCCCACGGCTGCAGTAACTCCGATTCAGAAGCGGTCGCGGCCAGTCAAT
AACATCCGGAACGAGATGCTCATGGTGTACATGCCCACAGCCAAGTGTTT
GGGAATCGTTATAAACTACAAAAAGCCGGAGAGTTTCGAAAGCGCCGCTG
CCGAGGAAGCCTGGATGGAGAACGCCCGCAAAGAAGCCTTGGAGCTCAAA
CTGAAACTAGAGAGCGGCCAAATCAATCCGGAGTCCATGCCCGATAGGAT
CGTGGTGGAGCCAACACGCAGCGAAATACCCAAGCAGGAGGCTTTGCGAT
TCATCGAGGAGCTCATTGAGCACGAGGATGCCCTCTTCATGGAGCGAGAC
TTCATCCAACTTTCCCAGCAGCTGCGCGAATGTTTGGGCCTGCGGCGCGC
CAATGTGGGCAAATGCCTGGAGATCCTCGAGCAGTTCAAGGAGGTGGAGT
TCACCAAGTTGATGCTGCTGCGCAATCCGGAGTGCGTGGACATAATGCGC
CGACTTCGCCGGTATGTGGGCAATCTGGAGCTCTGGAAAATGGACCTGTC
CGACGAGGTGGAGTTCAAGGAGAGGGCGCAGACCATACGCAAGGTCTCCT
CTGGCATATACGATGGCTTCAAGAGTCTCTTCAATCCGGAGCCCGAGAGC
GAGGACAACTTTTGGATCGACTTCTGCGAAAAGGTAAAAATCTACAAGAC
CTATACGAAAAATATCAACGAAAACCTTCGCGTCGGGATGAACGAGCGCG
GATATAATAGCCTGGTTTTGGCCAAGGAGGCCGCCGCTTCAGCCGGATCG
GCTCCACAGTAAATGATCGAGGACCAGTTCTGCTGGACCAATTACATGAT
AAGTTACTCGTAAGCGTTACAAACCAGGCAACTTAAAGACCGTGCTTTGG
ATGACAAAGTTTTGATGAGCCAAGTGGGCTATGCTTAATTCTAGGTTAAA
AATTCAGCTAAATTCCTTAATTCTGTTTGCCTGCCAGGTGCATGTCGTGT
TACGCTGCGCTGATGGGGCTTTTCCTGCTGCATCCGCTTATTACCAGACT
AAAAAAAAGGTTTTTGCTTCGAAACCCCTAAATATTTTCTAAGTTTGTAG
ATGATTTGAATAATATTGAATTAAATATAGATGGTACATACAAAAAAAAA
AAAAAAAAA

LD23804.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-RA 2151 CG7946-RA 282..2124 1..1843 9215 100 Plus
CG7946.a 2835 CG7946.a 994..2835 1..1842 9210 100 Plus
CG7946.b 2810 CG7946.b 1033..2658 1..1626 8130 100 Plus
CG7946.b 2810 CG7946.b 2651..2810 1683..1842 785 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25875959..25876761 751..1553 4015 100 Plus
chr3R 27901430 chr3R 25875130..25875879 1..750 3750 100 Plus
chr3R 27901430 chr3R 25876823..25877112 1552..1841 1450 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30053544..30054346 751..1553 4015 100 Plus
3R 32079331 3R 30052715..30053464 1..750 3750 100 Plus
3R 32079331 3R 30054408..30054699 1552..1843 1460 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29794375..29795177 751..1553 4015 100 Plus
3R 31820162 3R 29793546..29794295 1..750 3750 100 Plus
3R 31820162 3R 29795239..29795530 1552..1843 1460 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:43:52 has no hits.

LD23804.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:44:30 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25876825..25877112 1554..1841 100   Plus
chr3R 25875959..25876761 751..1553 100 -> Plus
chr3R 25875130..25875879 1..750 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:00 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 1..1428 85..1512 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:35 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 1..1428 85..1512 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:58:15 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 1..1428 85..1512 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:04:08 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 1..1428 85..1512 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:13:00 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 1..1428 85..1512 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:31:28 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 202..2042 1..1841 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:35 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 202..2042 1..1841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:58:15 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 202..2042 1..1841 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:04:09 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 202..2042 1..1841 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:13:00 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 202..2042 1..1841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:30 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30052715..30053464 1..750 100 -> Plus
3R 30053544..30054346 751..1553 100 -> Plus
3R 30054410..30054697 1554..1841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:30 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30052715..30053464 1..750 100 -> Plus
3R 30053544..30054346 751..1553 100 -> Plus
3R 30054410..30054697 1554..1841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:30 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30052715..30053464 1..750 100 -> Plus
3R 30053544..30054346 751..1553 100 -> Plus
3R 30054410..30054697 1554..1841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:58:15 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25878437..25879186 1..750 100 -> Plus
arm_3R 25879266..25880068 751..1553 100 -> Plus
arm_3R 25880132..25880419 1554..1841 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:42:14 Download gff for LD23804.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29793546..29794295 1..750 100 -> Plus
3R 29794375..29795177 751..1553 100 -> Plus
3R 29795241..29795528 1554..1841 100   Plus

LD23804.pep Sequence

Translation from 84 to 1511

> LD23804.pep
MGKEKAAASYSIGDLVFAKVKGYPPWPAKITKSNNNKKYNVYFYGTGETA
NIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIESALRGEDSAPIDLL
DGAEPVAPPTTGDGVKTEEPKPEPGPEPATAAPVAAAAEKPKKSGTRKTK
APPRHVDGDSEAGAELAPPPAKRRVPTEGLATAAAIPAAPAAATPTSSKK
SVKKSKPTAAVTPIQKRSRPVNNIRNEMLMVYMPTAKCLGIVINYKKPES
FESAAAEEAWMENARKEALELKLKLESGQINPESMPDRIVVEPTRSEIPK
QEALRFIEELIEHEDALFMERDFIQLSQQLRECLGLRRANVGKCLEILEQ
FKEVEFTKLMLLRNPECVDIMRRLRRYVGNLELWKMDLSDEVEFKERAQT
IRKVSSGIYDGFKSLFNPEPESEDNFWIDFCEKVKIYKTYTKNINENLRV
GMNERGYNSLVLAKEAAASAGSAPQ*

LD23804.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18819-PA 498 GF18819-PA 1..498 1..475 1671 69.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11728-PA 478 GG11728-PA 1..478 1..475 1992 89.6 Plus
Dere\GG11726-PA 473 GG11726-PA 1..473 1..475 1980 85.7 Plus
Dere\GG16038-PA 248 GG16038-PA 14..245 228..472 459 39.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19174-PA 502 GH19174-PA 1..493 1..470 1584 64.1 Plus
Dgri\GH19176-PA 245 GH19176-PA 1..229 233..461 853 69.3 Plus
Dgri\GH17401-PA 154 GH17401-PA 14..154 12..161 144 29.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-PB 475 CG7946-PB 1..475 1..475 2440 100 Plus
CG7946-PA 475 CG7946-PA 1..475 1..475 2440 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24210-PA 475 GI24210-PA 1..470 1..472 1575 64.5 Plus
Dmoj\GI22730-PA 143 GI22730-PA 5..90 3..89 157 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14025-PA 485 GL14025-PA 1..476 1..466 1750 71.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20710-PA 485 GA20710-PA 1..476 1..466 1750 71.3 Plus
Dpse\GA28522-PA 361 GA28522-PA 104..357 215..470 637 52.7 Plus
Dpse\GA28896-PA 191 GA28896-PA 6..179 288..463 405 44.3 Plus
Dpse\GA28960-PA 128 GA28960-PA 1..86 1..85 240 54.7 Plus
Dpse\GA28522-PA 361 GA28522-PA 1..86 1..85 219 51.2 Plus
Dpse\GA27257-PA 305 GA27257-PA 156..285 304..441 152 27.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12857-PA 473 GM12857-PA 1..473 1..475 2393 96.4 Plus
Dsec\GM19578-PA 241 GM19578-PA 6..240 227..473 438 36.8 Plus
Dsec\GM25896-PA 226 GM25896-PA 1..70 1..69 152 40 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21500-PA 476 GD21500-PA 1..476 1..475 2408 96.6 Plus
Dsim\GD14806-PA 241 GD14806-PA 6..240 227..473 432 36.4 Plus
Dsim\GD20466-PA 230 GD20466-PA 1..70 1..69 154 40 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10780-PA 483 GJ10780-PA 1..482 1..475 1611 66.1 Plus
Dvir\GJ14058-PA 147 GJ14058-PA 14..97 13..95 176 41.2 Plus
Dvir\GJ24668-PA 164 GJ24668-PA 13..98 11..95 158 37.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13869-PA 516 GK13869-PA 191..511 156..467 1211 72.6 Plus
Dwil\GK15060-PA 917 GK15060-PA 693..911 224..441 640 52.5 Plus
Dwil\GK15060-PA 917 GK15060-PA 2..84 6..89 215 46.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10855-PA 481 GE10855-PA 1..481 1..475 2102 88.6 Plus

LD23804.hyp Sequence

Translation from 84 to 1511

> LD23804.hyp
MGKEKAAASYSIGDLVFAKVKGYPPWPAKITKSNNNKKYNVYFYGTGETA
NIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIESALRGEDSAPIDLL
DGAEPVAPPTTGDGVKTEEPKPEPGPEPATAAPVAAAAEKPKKSGTRKTK
APPRHVDGDSEAGAELAPPPAKRRVPTEGLATAAAIPAAPAAATPTSSKK
SVKKSKPTAAVTPIQKRSRPVNNIRNEMLMVYMPTAKCLGIVINYKKPES
FESAAAEEAWMENARKEALELKLKLESGQINPESMPDRIVVEPTRSEIPK
QEALRFIEELIEHEDALFMERDFIQLSQQLRECLGLRRANVGKCLEILEQ
FKEVEFTKLMLLRNPECVDIMRRLRRYVGNLELWKMDLSDEVEFKERAQT
IRKVSSGIYDGFKSLFNPEPESEDNFWIDFCEKVKIYKTYTKNINENLRV
GMNERGYNSLVLAKEAAASAGSAPQ*

LD23804.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-PB 475 CG7946-PB 1..475 1..475 2440 100 Plus
CG7946-PA 475 CG7946-PA 1..475 1..475 2440 100 Plus