BDGP Sequence Production Resources |
Search the DGRC for LD23816
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 238 |
Well: | 16 |
Vector: | pOT2 |
Associated Gene/Transcript | sau-RA |
Protein status: | LD23816.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1722 |
Gene | Date | Evidence |
---|---|---|
CG7085 | 2001-09-19 | Blastp of sequenced clone |
l(2)s5379 | 2008-04-29 | Release 5.5 accounting |
l(2)s5379 | 2008-08-15 | Release 5.9 accounting |
l(2)s5379 | 2008-12-18 | 5.12 accounting |
1722 bp (1722 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058532
> LD23816.complete CGGAAATCATGTCACGTCGGAACGTCGACAAAAGACACAAATAATAGGAA AAAGCTTATTTCGCGCAGGCACTCGCATATTCCCAGTAAATGCAAGGCCA ATGCAAATGCACCATTAGTACGGGCCACCAAATTGTAAATCAAACCGTCG AGTTCCCAGCGCAAAAACGCCGAGCAAAGCAGCAACAACGAAACGCAGTT TAGGGCCTGCATTTTTGCGATAGTGTGAAAAGTGCGTGTGTGCAAAAGAA TACAAAATAAAGGGGGCGCAAAAGAGTCAGTGAAAACAACAACACACAAA AACACAAGACACAAGTACACAGAGAAAAACGCAAACACCCGCACTCGCGC AAACAGACACACACACACACTGTGAAACTCCCAACGTCGAGTCAGCAAAT TGTGCCACACACACAAAACGAGGAAAGAGGAAGAAGAGCAGCAGCAGAAA AACATAGGTGCTCCGCTCGCATCCCACATCTCCAAAACTCCATCGATCCG AACTTCCCGACTACCCAACCCAACTCTCCGGAATGAATCGCTCCGACGGA TTGGTGCGTCGCTCGGTGAAACCCCGCGAAAACGGTGGGGCGGAGGGTGG GTTGAATGCCAACACGCCGGACGACAACCAGGATGCACTGGACAACCTAA AGGACCAGGAGGACAATATCGACGATGGCGACTCCAAGGAAACACGACTA ACGCTCATGGAGGAGGTTCTGCTGCTGGGACTCAAGGACAAGGAGGGCTA CACATCTTTCTGGAACGACTGCATATCAAGCGGCTTGCGCGGATGCATTC TCATAGAGCTTGGACTGCGAGGTCGCGTGATGATCGAGAAATCTGGAATG CGGCGACGTGGTCTATGTACAAGGAAATTAATACTGAAATCGGATCAGCA GACGGGAGACGTTCTACTCGATGAGGCACTTAAACACATTAAGGAAACAG ATCCCCCGGAGACGGTGCAGAGCTGGATTGAATATCTTAGTGGTGAAACC TGGAATCCGTTGAAATTGCGCTACCAACTGAAAAATGTACGCGAACGTCT GGCCAAAAATCTGGTGGAGAAGGGTGTGCTCACGACGGAAAAGCAAAATT TTCTACTCTTCGATATGACGACACATCCGCTGAGCGACAATGTTGTCAAA TGTCGCCTGGTGAAGAAGATCCAAGATTCTGTGCTCTCCAAGTGGGTCAA CGATCCACAGCGCATGGACAAGCGGATGCTGGCGCTTATCTTCCTGGCGC ACGCCAGCGATGTGATCGAGAACGCCTTCGCGCCGCTGAATGATGACGAC TATGAGGTGGCCATGAAGCGGGTGCGGGAGCTGCTGGATCTCGACTTCGA AGCCGAGTCGGCCAAGCCGAATGCGAACGAAATTCTGTGGGCGGTGTTCA TGGCGTTCACGAAATAGACGATCCTCTGATCCTCTACGCTCCTCTCAATA GCACACACACACACACAACACACACCCCAACACAGAAATACAGACCCACA TCTGGAATACATTTTGCTGCTTTTGTTTTAGAAACTTTGCTGTGAGTGGA ACCGAATCGGGCGATAGGATTTTCTTAAATGGCAACCACCCCAAATATCT GTTTCAGTAATATATATTTTTTAAGCGAGACTATAAAGCAGCCATAATTC CTATTTAAATATACATATGTTTATCAACACTTCAATAATACCAATCAAAC GCTCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)s5379-RE | 1719 | l(2)s5379-RE | 16..1719 | 1..1704 | 8520 | 100 | Plus |
l(2)s5379-RD | 2463 | l(2)s5379-RD | 16..1719 | 1..1704 | 8520 | 100 | Plus |
l(2)s5379-RA | 2463 | l(2)s5379-RA | 16..1719 | 1..1704 | 8520 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 2226265..2227010 | 1..746 | 3715 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 2229622..2230159 | 1167..1704 | 2690 | 100 | Plus |
chr2L | 23010047 | chr2L | 2229383..2229559 | 992..1168 | 885 | 100 | Plus |
chr2L | 23010047 | chr2L | 2229010..2229140 | 744..874 | 655 | 100 | Plus |
chr2L | 23010047 | chr2L | 2229201..2229324 | 872..995 | 620 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2226537..2227282 | 1..746 | 3730 | 100 | Plus |
2L | 23513712 | 2L | 2229876..2230413 | 1167..1704 | 2690 | 100 | Plus |
2L | 23513712 | 2L | 2229637..2229813 | 992..1168 | 885 | 100 | Plus |
2L | 23513712 | 2L | 2229264..2229394 | 744..874 | 655 | 100 | Plus |
2L | 23513712 | 2L | 2229455..2229578 | 872..995 | 620 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2226537..2227282 | 1..746 | 3730 | 100 | Plus |
2L | 23513712 | 2L | 2229876..2230413 | 1167..1704 | 2690 | 100 | Plus |
2L | 23513712 | 2L | 2229637..2229813 | 992..1168 | 885 | 100 | Plus |
2L | 23513712 | 2L | 2229264..2229394 | 744..874 | 655 | 100 | Plus |
2L | 23513712 | 2L | 2229455..2229578 | 872..995 | 620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 2226265..2226555 | 1..291 | 100 | == | Plus |
chr2L | 2229384..2229559 | 993..1168 | 100 | -> | Plus |
chr2L | 2226635..2227009 | 371..745 | 99 | -> | Plus |
chr2L | 2229012..2229139 | 746..873 | 100 | -> | Plus |
chr2L | 2229203..2229321 | 874..992 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)s5379-RE | 1..885 | 533..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)s5379-RE | 1..885 | 533..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)s5379-RD | 1..885 | 533..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)s5379-RE | 1..885 | 533..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sau-RD | 1..885 | 533..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)s5379-RE | 15..1718 | 1..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)s5379-RE | 15..1718 | 1..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)s5379-RD | 196..1899 | 1..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)s5379-RE | 15..1718 | 1..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sau-RD | 196..1899 | 1..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2226537..2227281 | 1..745 | 100 | -> | Plus |
2L | 2229266..2229393 | 746..873 | 100 | -> | Plus |
2L | 2229457..2229575 | 874..992 | 100 | -> | Plus |
2L | 2229638..2229813 | 993..1168 | 100 | -> | Plus |
2L | 2229878..2230413 | 1169..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2226537..2227281 | 1..745 | 100 | -> | Plus |
2L | 2229266..2229393 | 746..873 | 100 | -> | Plus |
2L | 2229457..2229575 | 874..992 | 100 | -> | Plus |
2L | 2229638..2229813 | 993..1168 | 100 | -> | Plus |
2L | 2229878..2230413 | 1169..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2226537..2227281 | 1..745 | 100 | -> | Plus |
2L | 2229266..2229393 | 746..873 | 100 | -> | Plus |
2L | 2229457..2229575 | 874..992 | 100 | -> | Plus |
2L | 2229638..2229813 | 993..1168 | 100 | -> | Plus |
2L | 2229878..2230413 | 1169..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 2229638..2229813 | 993..1168 | 100 | -> | Plus |
arm_2L | 2226537..2227281 | 1..745 | 100 | -> | Plus |
arm_2L | 2229266..2229393 | 746..873 | 100 | -> | Plus |
arm_2L | 2229457..2229575 | 874..992 | 100 | -> | Plus |
arm_2L | 2229878..2230413 | 1169..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2226537..2227281 | 1..745 | 100 | -> | Plus |
2L | 2229266..2229393 | 746..873 | 100 | -> | Plus |
2L | 2229457..2229575 | 874..992 | 100 | -> | Plus |
2L | 2229638..2229813 | 993..1168 | 100 | -> | Plus |
2L | 2229878..2230413 | 1169..1704 | 100 | Plus |
Translation from 532 to 1416
> LD23816.pep MNRSDGLVRRSVKPRENGGAEGGLNANTPDDNQDALDNLKDQEDNIDDGD SKETRLTLMEEVLLLGLKDKEGYTSFWNDCISSGLRGCILIELGLRGRVM IEKSGMRRRGLCTRKLILKSDQQTGDVLLDEALKHIKETDPPETVQSWIE YLSGETWNPLKLRYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPL SDNVVKCRLVKKIQDSVLSKWVNDPQRMDKRMLALIFLAHASDVIENAFA PLNDDDYEVAMKRVRELLDLDFEAESAKPNANEILWAVFMAFTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14611-PA | 295 | GF14611-PA | 1..295 | 1..294 | 1520 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24839-PA | 294 | GG24839-PA | 1..294 | 1..294 | 1520 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13086-PA | 298 | GH13086-PA | 1..298 | 1..294 | 1401 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sau-PE | 294 | CG7085-PE | 1..294 | 1..294 | 1520 | 100 | Plus |
sau-PA | 294 | CG7085-PA | 1..294 | 1..294 | 1520 | 100 | Plus |
sau-PD | 294 | CG7085-PD | 1..294 | 1..294 | 1520 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21581-PA | 296 | GI21581-PA | 1..296 | 1..294 | 1480 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18710-PA | 296 | GL18710-PA | 1..296 | 1..294 | 1469 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25765-PA | 151 | GA25765-PA | 1..147 | 1..145 | 686 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18323-PA | 294 | GM18323-PA | 1..294 | 1..294 | 1539 | 99.3 | Plus |
Dsec\GM13603-PA | 144 | GM13603-PA | 1..144 | 72..215 | 756 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23139-PA | 294 | GD23139-PA | 1..294 | 1..294 | 1539 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17492-PA | 297 | GJ17492-PA | 1..297 | 1..294 | 1506 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15146-PA | 296 | GK15146-PA | 1..296 | 1..294 | 1488 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18051-PA | 294 | GE18051-PA | 1..294 | 1..294 | 1526 | 98.6 | Plus |
Translation from 532 to 1416
> LD23816.hyp MNRSDGLVRRSVKPRENGGAEGGLNANTPDDNQDALDNLKDQEDNIDDGD SKETRLTLMEEVLLLGLKDKEGYTSFWNDCISSGLRGCILIELGLRGRVM IEKSGMRRRGLCTRKLILKSDQQTGDVLLDEALKHIKETDPPETVQSWIE YLSGETWNPLKLRYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPL SDNVVKCRLVKKIQDSVLSKWVNDPQRMDKRMLALIFLAHASDVIENAFA PLNDDDYEVAMKRVRELLDLDFEAESAKPNANEILWAVFMAFTK*