Clone LD23830 Report

Search the DGRC for LD23830

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:238
Well:30
Vector:pOT2
Associated Gene/TranscriptNon1-RA
Protein status:LD23830.pep: gold
Preliminary Size:2190
Sequenced Size:2167

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8801 2000-02-14 Blastp of sequenced clone
CG8801 2003-01-01 Sim4 clustering to Release 3
CG8801 2008-04-29 Release 5.5 accounting
CG8801 2008-08-15 Release 5.9 accounting
CG8801 2008-12-18 5.12 accounting

Clone Sequence Records

LD23830.complete Sequence

2167 bp (2167 high quality bases) assembled on 2000-02-14

GenBank Submission: AF181654

> LD23830.complete
TTTTTGCTTTCGATTCCGCATTTATTTTCCTTTCGACGCGTGGAAAATAA
ACAAATCCTGCCAAGATGAGTCTGTACAACTTCAAAAAGATCATGGTGGT
TCCGCCAGCAAAGGACTTCATCGACATTATGCTGTCGAAGACACAGCGCA
AGACCCCGACGGTGGTCCACAAGGGCTACAAAATATCCAGAATCCGGGCA
TTCTACACGCGCAAGGTGAAGTACACGCAGCAGAACTTCCACGATCGCTT
GTCGCAGATCATTCAGGACTTTCCCAAACTGGACGACGTGCATCCTTTCT
ACGCCGACTTGATGAACGTGCTGTACGACAAGGATCATTACAAGCTGGCG
CTGGGTCAACTCAACACAGCCAGGCATTTGGTGGACAATGTGGCCAAGGA
CTACGTGCGCCTGCTGAAGTACGGTGACTCGCTGTATCGCTGCAAACAGT
TGAAGAAAGCTGCCCTGGGTCGCATGGCCACCATTATGAAGCGACAGGCC
TCCAATCTGACGTATCTGGAGCAAGTGCGTCAGCATCTCTCGCGTCTGCC
CACCATCGATCCCTATTCGCGTACCATCATCATCTGCGGTTTCCCCAACG
TGGGCAAGTCCTCGTTCATCAACAAGATCACCCGCGCCGATGTGGAAGTG
CAGCCCTACGCCTTCACCACGAAATCCCTGTACGTGGGACACACAGACTA
CAAATATCTGCGCTGGCAGGTCATTGACACACCCGGCATCCTGGATCATC
CCCTGGAAGAGCGCAATGTGATCGAAATGCAAGCCATTACTGCCTTGGCT
CATTTGCGCGCCTGCGTCCTGTACTTCATGGATATCTCCGAGCAGTGCGG
ACACTCCTTGGAGGAACAGGTCAAGCTGTTCGAGAGCATCAAGCCTTTGT
TTACAAACAAACCCCTCATCCTGGCCATCAACAAGATCGATATTCTAACA
CCAGAGGATCTGCCAGAGGAGCGACGAGCGATTATCACCAAACTACAGGA
GGACAAGAACATTCCCGTAATGCTCATGTCCACCGTACAGGAAACCGGTG
TCATGGAGGTGAAAACCGAGGCATGTGAGCGTTTGCTCTCGTACCGTGTT
GACCAGAAGATGCGCACAAAGAAGGTGGACAACATCCTGAACCGCTTGCA
TGTGGCGATGCCAGCGCCGCGAGATGACAAACTTCGTGCACCCTGCATCC
CAGAAAAGGCCTCGGCGCGCCTGCTACAGAATGCCGACAAGGCAGAGCGC
AAGCGCAAGCTGGAGAAGGAGATCGAGGAGGAGATGGGCGACGACTACAC
GCTGGACCTCAAGAAGAACTACAGCGAAATCCCCGAGGAGGAGCGCTACG
ACATTATTCCAGAGTTCTGGCAGGGTCACAACATTGCCGACTACATCGAT
GCCGACATCTTCGACAAGCTGGAGGAGCTGGAGCGCGAGGAGGGACTGCG
GGAGGAGAGCGGCGTCTACAAGGTGCCCGATATGACCATGGACGAGACGC
TCAAGGAGATCCGCGAGATAGCCAAGCAAATCCGTGGCAAGCGCTTCGAG
CTGCGCGACGAAAAGCGACTGTCGTCGCGAAAGAACAAGCCAGTCATCCC
ACGAAACAAGCAGCCCAAGGTGCGTGACCGTTCCGTACAGAAACTGGTGT
CGACGATGGAGGGCCTCGGTGTGGACATGTCCGGCAGCGAGAACGCCAAC
TTCACCAAGTCCGTGGTGGATCTGCGTCGTGGCCAGGTGGCAGTTGGCTC
CAAGAAGGTGCCCATGCAGCCGCTGCTCGACAAGGAGTCCTCTGCGGTGG
TCAGGAAGACTGGTCAGCCTCTGAAGCGGGCGCCGTCGCGCGACACACTG
GGCATCAAGAACTTGGCCATTCGCAAGAAGGCGCAAATTATGGCCAAGCG
GGATATTGCCAAGAAGGTCACAAGCAGGGGTCTCAAGGGCGAGGCGGATC
GCTTCATCGGCACCAAGATGCCGAAGCATTTGTTCTCCGGCAAGCGTGGA
AATGGCAAGACGGATCGCCGTTAAGCGCCGCAGCCTTGGCTGGTTAAGTG
ATTCTACCTGGTGGGCTCGCCTGCTCCTCTGTATAAACTAAGCGTCTATC
TTTATCCCTGAAAAACATTTTCAATACAATATTGTATTTTTACAAAAAAA
AAAAAAAAAAAAAAAAA

LD23830.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8801-RA 2433 CG8801-RA 146..2295 1..2150 10735 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5283850..5285604 2143..389 8700 99.7 Minus
chr2R 21145070 chr2R 5285674..5285950 388..112 1355 99.3 Minus
chr2R 21145070 chr2R 5286073..5286186 114..1 570 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9396353..9398114 2150..389 8795 99.9 Minus
2R 25286936 2R 9398184..9398460 388..112 1385 100 Minus
2R 25286936 2R 9398583..9398696 114..1 570 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9397552..9399313 2150..389 8795 99.9 Minus
2R 25260384 2R 9399383..9399659 388..112 1385 100 Minus
2R 25260384 2R 9399782..9399895 114..1 570 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:42:53 has no hits.

LD23830.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:43:34 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5286074..5286186 1..113 100   Minus
chr2R 5283850..5285604 389..2143 99 <- Minus
chr2R 5285674..5285948 114..388 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:04 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
CG8801-RA 1..1959 66..2024 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:35:34 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
CG8801-RA 1..1959 66..2024 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:04:39 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
CG8801-RA 1..1959 66..2024 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:11:27 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
CG8801-RA 1..1959 66..2024 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:58 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
Non1-RA 1..1959 66..2024 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:38:30 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
CG8801-RA 55..2197 1..2143 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:35:33 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
CG8801-RA 55..2197 1..2143 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:04:39 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
CG8801-RA 39..2181 1..2143 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:11:27 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
CG8801-RA 55..2197 1..2143 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:58 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
Non1-RA 39..2181 1..2143 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:34 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9396360..9398114 389..2143 100 <- Minus
2R 9398184..9398458 114..388 100 <- Minus
2R 9398584..9398696 1..113 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:34 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9396360..9398114 389..2143 100 <- Minus
2R 9398184..9398458 114..388 100 <- Minus
2R 9398584..9398696 1..113 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:34 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9396360..9398114 389..2143 100 <- Minus
2R 9398184..9398458 114..388 100 <- Minus
2R 9398584..9398696 1..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:04:39 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5283865..5285619 389..2143 100 <- Minus
arm_2R 5285689..5285963 114..388 100 <- Minus
arm_2R 5286089..5286201 1..113 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:47:52 Download gff for LD23830.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9397559..9399313 389..2143 100 <- Minus
2R 9399383..9399657 114..388 100 <- Minus
2R 9399783..9399895 1..113 100   Minus

LD23830.hyp Sequence

Translation from 65 to 2023

> LD23830.hyp
MSLYNFKKIMVVPPAKDFIDIMLSKTQRKTPTVVHKGYKISRIRAFYTRK
VKYTQQNFHDRLSQIIQDFPKLDDVHPFYADLMNVLYDKDHYKLALGQLN
TARHLVDNVAKDYVRLLKYGDSLYRCKQLKKAALGRMATIMKRQASNLTY
LEQVRQHLSRLPTIDPYSRTIIICGFPNVGKSSFINKITRADVEVQPYAF
TTKSLYVGHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAITALAHLRAC
VLYFMDISEQCGHSLEEQVKLFESIKPLFTNKPLILAINKIDILTPEDLP
EERRAIITKLQEDKNIPVMLMSTVQETGVMEVKTEACERLLSYRVDQKMR
TKKVDNILNRLHVAMPAPRDDKLRAPCIPEKASARLLQNADKAERKRKLE
KEIEEEMGDDYTLDLKKNYSEIPEEERYDIIPEFWQGHNIADYIDADIFD
KLEELEREEGLREESGVYKVPDMTMDETLKEIREIAKQIRGKRFELRDEK
RLSSRKNKPVIPRNKQPKVRDRSVQKLVSTMEGLGVDMSGSENANFTKSV
VDLRRGQVAVGSKKVPMQPLLDKESSAVVRKTGQPLKRAPSRDTLGIKNL
AIRKKAQIMAKRDIAKKVTSRGLKGEADRFIGTKMPKHLFSGKRGNGKTD
RR*

LD23830.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Non1-PB 652 CG8801-PB 1..652 1..652 3340 100 Plus
Non1-PA 652 CG8801-PA 1..652 1..652 3340 100 Plus

LD23830.pep Sequence

Translation from 65 to 2023

> LD23830.pep
MSLYNFKKIMVVPPAKDFIDIMLSKTQRKTPTVVHKGYKISRIRAFYTRK
VKYTQQNFHDRLSQIIQDFPKLDDVHPFYADLMNVLYDKDHYKLALGQLN
TARHLVDNVAKDYVRLLKYGDSLYRCKQLKKAALGRMATIMKRQASNLTY
LEQVRQHLSRLPTIDPYSRTIIICGFPNVGKSSFINKITRADVEVQPYAF
TTKSLYVGHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAITALAHLRAC
VLYFMDISEQCGHSLEEQVKLFESIKPLFTNKPLILAINKIDILTPEDLP
EERRAIITKLQEDKNIPVMLMSTVQETGVMEVKTEACERLLSYRVDQKMR
TKKVDNILNRLHVAMPAPRDDKLRAPCIPEKASARLLQNADKAERKRKLE
KEIEEEMGDDYTLDLKKNYSEIPEEERYDIIPEFWQGHNIADYIDADIFD
KLEELEREEGLREESGVYKVPDMTMDETLKEIREIAKQIRGKRFELRDEK
RLSSRKNKPVIPRNKQPKVRDRSVQKLVSTMEGLGVDMSGSENANFTKSV
VDLRRGQVAVGSKKVPMQPLLDKESSAVVRKTGQPLKRAPSRDTLGIKNL
AIRKKAQIMAKRDIAKKVTSRGLKGEADRFIGTKMPKHLFSGKRGNGKTD
RR*

LD23830.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13082-PA 652 GF13082-PA 1..652 1..652 3157 94.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10559-PA 652 GG10559-PA 1..652 1..652 3435 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21544-PA 652 GH21544-PA 1..652 1..652 3181 92.6 Plus
Dgri\GH10882-PA 375 GH10882-PA 204..322 175..293 154 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Non1-PB 652 CG8801-PB 1..652 1..652 3340 100 Plus
Non1-PA 652 CG8801-PA 1..652 1..652 3340 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19517-PA 652 GI19517-PA 1..652 1..652 3155 92.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16889-PA 653 GL16889-PA 1..653 1..652 3120 91.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21331-PA 653 GA21331-PA 1..653 1..652 3117 91.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20605-PA 652 GM20605-PA 1..652 1..652 3458 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10078-PA 652 GD10078-PA 1..652 1..652 3461 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21086-PA 652 GJ21086-PA 1..652 1..652 3195 93.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20864-PA 652 GK20864-PA 1..652 1..652 3164 92.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22324-PA 652 GE22324-PA 1..652 1..652 3446 98.8 Plus