BDGP Sequence Production Resources |
Search the DGRC for LD23842
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 238 |
Well: | 42 |
Vector: | pOT2 |
Associated Gene/Transcript | Tom40-RA |
Protein status: | LD23842.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1671 |
Gene | Date | Evidence |
---|---|---|
CG12157 | 2001-01-01 | Release 2 assignment |
CG12157 | 2002-05-16 | Blastp of sequenced clone |
CG12157 | 2003-01-01 | Sim4 clustering to Release 3 |
Tom40 | 2008-04-29 | Release 5.5 accounting |
Tom40 | 2008-08-15 | Release 5.9 accounting |
Tom40 | 2008-12-18 | 5.12 accounting |
1671 bp (1671 high quality bases) assembled on 2002-05-16
GenBank Submission: AY118926
> LD23842.complete TCGAGACATAATAACCTCCGATATAGAAGTCCGATATCGAAACGTGTTGG CTTTGAAATTACATAGATTACATCGGGACATTCGAAATGGGCAACGTGCT AGCGGCTTCCTCCGGCGCCCCAGGCAGTGGCGCCTCAAATCTGGGCCTCG GCCTACAGGAACCGGCTCCCCTGCCCTCTAATTCCGGCTCACTGACCGAA TCCTCTTCGTCCGCCGAAGGCTTGGACTCACTTGCCGCCGCCAAGGACGC AGCGCTGGAGAATCCCGGCACCGTTGAGGAGCTTCACAAAAAGTGCAAAG ATATCCAGGCCATCACCTTCGAGGGCGCCAAGATCATGCTGAACAAGGGC CTGAGCAACCACTTCCAGGTGTCGCACACCATCAACATGAGCAATGTGGT ACCCAGTGGATATCGCTTCGGAGCCACCTATGTGGGCACCAAGGAGTTCA GCCCCACGGAAGCTTTTCCCGTGCTCCTGGGCGACATCGATCCGGCTGGC AACCTCAACGCCAATGTTATCCATCAGTTCTCTGCCCGTCTGCGCTGCAA ATTCGCTTCGCAGATCCAGGAGTCCAAGGTGGTGGCCTCACAGCTGACGA CCGACTATCGCGGTAGTGATTACACCCTCTCGCTGACGGTGGCCAATCCC AGCATATTCACCAACTCCGGCGTGGTCGTTGGCCAATATCTCCAGTCAGT CACTCCAGCCCTCGCCCTGGGCTCCGAACTGGCCTACCAGTTCGGTCCGA ACGTCCCCGGCCGTCAGATAGCTATTATGTCCGTCGTGGGCCGCTATACG GCTGGAAGCTCGGTGTGGTCGGGGACTCTGGGTCAGAGCGGTCTGCACGT GTGCTACTACCAGAAGGCCAGCGACCAGCTGCAGATCGGTGCCGAGGTGG AGACCAGTCTGCGGATGCAGGAGTCGGTGGCCACGTTAGCGTATCAGATC GATCTGCCCAAAGCGAATCTGGTCTTCAGAGGCGGAATTGATTCCAACTG GCAAATCTTTGGTGTTTTGGAGAAGCGTCTGGCTCCATTGCCATTCACAC TAGCCCTGAGCGGACGCATGAACCACGTGAAGAACAACTTTAGACTCGGC TGCGGGCTGATGATCGGCTAAGCCGGATCTTTGGACGGCCATTATCTACT TCAGCCTCAGACCCCAAGCACACACCCATCCATTGTAACTTTTTCACATC ATCCGCTAACAACAAGAAGAAGAACAACAACAAACAAAGAGATATATAAA TCTGCTAACAAACTTTTTTTTATGATAATCTGTCTGTCGCTTGTGTGTAT AAAAAATGCCTTGCATTGCAAAAGAGGCGGCCAGCAGGGATCTGGGATCC TATGGAATGGCTTTTATTCTTTGATCCATTATGTACCAGTGTGCCACTGT TTGTCGTCCGTTGTTAATCGATCAATTTAACCCACTGACAGAGTCATAAA TGCGGAGTTCAAAATACAAGAATGAAAACTATTCCACAATTAGTATACAT TTCTTCACTGAATACACACACACACACACACATCCAAAAGAAACATACAA CAAGAAACTATCACTGTACATTTTATGTTGCTTCCTAAACGTACGCATTT ATTTAGAACAACCAGCTATTTCCTCCAGACAAACAAAAATGAATTAAATA ATTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 7630829..7631502 | 980..1653 | 3370 | 100 | Plus |
chrX | 22417052 | chrX | 7630309..7630730 | 561..982 | 2110 | 100 | Plus |
chrX | 22417052 | chrX | 7629314..7629617 | 1..304 | 1505 | 99.7 | Plus |
chrX | 22417052 | chrX | 7629801..7630065 | 299..563 | 1325 | 100 | Plus |
chr2R | 21145070 | chr2R | 2113066..2113765 | 303..1002 | 560 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 7738899..7739589 | 980..1670 | 3440 | 99.9 | Plus |
X | 23542271 | X | 7738379..7738800 | 561..982 | 2110 | 100 | Plus |
X | 23542271 | X | 7737384..7737687 | 1..304 | 1505 | 99.7 | Plus |
X | 23542271 | X | 7737871..7738135 | 299..563 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 6225929..6226628 | 303..1002 | 560 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 7746997..7747687 | 980..1670 | 3440 | 99.8 | Plus |
X | 23527363 | X | 7746477..7746898 | 561..982 | 2110 | 100 | Plus |
X | 23527363 | X | 7745482..7745785 | 1..304 | 1505 | 99.6 | Plus |
X | 23527363 | X | 7745969..7746233 | 299..563 | 1325 | 100 | Plus |
2R | 25260384 | 2R | 6227128..6227215 | 303..390 | 290 | 88.6 | Plus |
2R | 25260384 | 2R | 6227680..6227827 | 855..1002 | 245 | 77.7 | Plus |
2R | 25260384 | 2R | 6227230..6227351 | 405..526 | 190 | 77 | Plus |
2R | 25260384 | 2R | 6227371..6227474 | 546..649 | 175 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 3944..4149 | 1429..1652 | 140 | 58.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 7629314..7629613 | 1..300 | 100 | -> | Plus |
chrX | 7629803..7630065 | 301..563 | 100 | -> | Plus |
chrX | 7630312..7630729 | 564..981 | 100 | -> | Plus |
chrX | 7630831..7631490 | 982..1641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RB | 1..1035 | 87..1121 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RB | 1..1035 | 87..1121 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RA | 1..1035 | 87..1121 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RB | 1..1035 | 87..1121 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RA | 1..1035 | 87..1121 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RA | 32..1684 | 1..1653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RA | 32..1684 | 1..1653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RA | 32..1684 | 1..1653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RA | 32..1684 | 1..1653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tom40-RA | 24..1676 | 1..1653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7737384..7737683 | 1..300 | 100 | -> | Plus |
X | 7737873..7738135 | 301..563 | 100 | -> | Plus |
X | 7738382..7738799 | 564..981 | 100 | -> | Plus |
X | 7738901..7739572 | 982..1653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7737384..7737683 | 1..300 | 100 | -> | Plus |
X | 7737873..7738135 | 301..563 | 100 | -> | Plus |
X | 7738382..7738799 | 564..981 | 100 | -> | Plus |
X | 7738901..7739572 | 982..1653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7737384..7737683 | 1..300 | 100 | -> | Plus |
X | 7737873..7738135 | 301..563 | 100 | -> | Plus |
X | 7738382..7738799 | 564..981 | 100 | -> | Plus |
X | 7738901..7739572 | 982..1653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 7631417..7631716 | 1..300 | 100 | -> | Plus |
arm_X | 7631906..7632168 | 301..563 | 100 | -> | Plus |
arm_X | 7632415..7632832 | 564..981 | 100 | -> | Plus |
arm_X | 7632934..7633605 | 982..1653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7745482..7745781 | 1..300 | 100 | -> | Plus |
X | 7745971..7746233 | 301..563 | 100 | -> | Plus |
X | 7746480..7746897 | 564..981 | 100 | -> | Plus |
X | 7746999..7747670 | 982..1653 | 100 | Plus |
Translation from 86 to 1120
> LD23842.pep MGNVLAASSGAPGSGASNLGLGLQEPAPLPSNSGSLTESSSSAEGLDSLA AAKDAALENPGTVEELHKKCKDIQAITFEGAKIMLNKGLSNHFQVSHTIN MSNVVPSGYRFGATYVGTKEFSPTEAFPVLLGDIDPAGNLNANVIHQFSA RLRCKFASQIQESKVVASQLTTDYRGSDYTLSLTVANPSIFTNSGVVVGQ YLQSVTPALALGSELAYQFGPNVPGRQIAIMSVVGRYTAGSSVWSGTLGQ SGLHVCYYQKASDQLQIGAEVETSLRMQESVATLAYQIDLPKANLVFRGG IDSNWQIFGVLEKRLAPLPFTLALSGRMNHVKNNFRLGCGLMIG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11050-PA | 337 | GF11050-PA | 1..337 | 1..344 | 1265 | 68.6 | Plus |
Dana\GF21026-PA | 347 | GF21026-PA | 51..347 | 46..344 | 1142 | 71.9 | Plus |
Dana\GF20781-PA | 328 | GF20781-PA | 1..327 | 1..343 | 366 | 28.1 | Plus |
Dana\GF18535-PA | 320 | GF18535-PA | 31..311 | 58..343 | 194 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19657-PA | 344 | GG19657-PA | 1..344 | 1..344 | 1643 | 93 | Plus |
Dere\GG23200-PA | 340 | GG23200-PA | 1..340 | 1..344 | 1248 | 69 | Plus |
Dere\GG16943-PA | 322 | GG16943-PA | 33..313 | 58..343 | 226 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12583-PA | 344 | GH12583-PA | 1..344 | 1..344 | 1400 | 74.7 | Plus |
Dgri\GH18215-PA | 317 | GH18215-PA | 28..308 | 58..343 | 216 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tom40-PC | 344 | CG12157-PC | 1..344 | 1..344 | 1748 | 100 | Plus |
Tom40-PB | 344 | CG12157-PB | 1..344 | 1..344 | 1748 | 100 | Plus |
Tom40-PA | 344 | CG12157-PA | 1..344 | 1..344 | 1748 | 100 | Plus |
tomboy40-PA | 340 | CG8330-PA | 1..340 | 1..344 | 1211 | 68.7 | Plus |
CG4520-PB | 320 | CG4520-PB | 32..306 | 58..338 | 204 | 24.8 | Plus |
CG4520-PA | 320 | CG4520-PA | 32..306 | 58..338 | 204 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16206-PA | 344 | GI16206-PA | 1..344 | 1..344 | 1433 | 77.3 | Plus |
Dmoj\GI16403-PA | 382 | GI16403-PA | 93..382 | 57..344 | 560 | 38.3 | Plus |
Dmoj\GI10168-PA | 317 | GI10168-PA | 28..308 | 58..343 | 226 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14724-PA | 334 | GL14724-PA | 1..334 | 1..344 | 1450 | 79.1 | Plus |
Dper\GL16251-PA | 325 | GL16251-PA | 31..325 | 50..344 | 805 | 53 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11443-PA | 334 | GA11443-PA | 1..334 | 1..344 | 1450 | 79.1 | Plus |
Dpse\GA25108-PA | 328 | GA25108-PA | 34..328 | 50..344 | 814 | 53.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17536-PA | 344 | GM17536-PA | 1..344 | 1..344 | 1776 | 97.1 | Plus |
Dsec\GM16540-PA | 340 | GM16540-PA | 1..340 | 1..344 | 1244 | 69.3 | Plus |
Dsec\GM24251-PA | 321 | GM24251-PA | 32..312 | 58..343 | 215 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16856-PA | 344 | GD16856-PA | 1..344 | 1..344 | 1776 | 97.1 | Plus |
Dsim\GD10402-PA | 340 | GD10402-PA | 1..340 | 1..344 | 1244 | 69.3 | Plus |
Dsim\GD19040-PA | 321 | GD19040-PA | 32..312 | 58..343 | 215 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15896-PA | 343 | GJ15896-PA | 1..343 | 1..344 | 1447 | 78.2 | Plus |
Dvir\GJ17024-PA | 388 | GJ17024-PA | 92..388 | 50..344 | 541 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25006-PA | 346 | GK25006-PA | 1..346 | 1..344 | 1469 | 79.8 | Plus |
Dwil\GK19497-PA | 341 | GK19497-PA | 1..341 | 1..344 | 1219 | 66.9 | Plus |
Dwil\GK15603-PA | 386 | GK15603-PA | 99..385 | 58..343 | 598 | 40.8 | Plus |
Dwil\GK11414-PA | 319 | GK11414-PA | 30..310 | 58..343 | 206 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15731-PA | 344 | GE15731-PA | 1..344 | 1..344 | 1640 | 93.6 | Plus |
Dyak\GE20769-PA | 340 | GE20769-PA | 1..340 | 1..344 | 1254 | 67.5 | Plus |
Dyak\GE24330-PA | 322 | GE24330-PA | 33..313 | 58..343 | 219 | 24.6 | Plus |
Translation from 86 to 1120
> LD23842.hyp MGNVLAASSGAPGSGASNLGLGLQEPAPLPSNSGSLTESSSSAEGLDSLA AAKDAALENPGTVEELHKKCKDIQAITFEGAKIMLNKGLSNHFQVSHTIN MSNVVPSGYRFGATYVGTKEFSPTEAFPVLLGDIDPAGNLNANVIHQFSA RLRCKFASQIQESKVVASQLTTDYRGSDYTLSLTVANPSIFTNSGVVVGQ YLQSVTPALALGSELAYQFGPNVPGRQIAIMSVVGRYTAGSSVWSGTLGQ SGLHVCYYQKASDQLQIGAEVETSLRMQESVATLAYQIDLPKANLVFRGG IDSNWQIFGVLEKRLAPLPFTLALSGRMNHVKNNFRLGCGLMIG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tom40-PC | 344 | CG12157-PC | 1..344 | 1..344 | 1748 | 100 | Plus |
Tom40-PB | 344 | CG12157-PB | 1..344 | 1..344 | 1748 | 100 | Plus |
Tom40-PA | 344 | CG12157-PA | 1..344 | 1..344 | 1748 | 100 | Plus |
tomboy40-PA | 340 | CG8330-PA | 1..340 | 1..344 | 1211 | 68.7 | Plus |
CG4520-PB | 320 | CG4520-PB | 32..306 | 58..338 | 204 | 24.8 | Plus |