Clone LD23846 Report

Search the DGRC for LD23846

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:238
Well:46
Vector:pOT2
Associated Gene/TranscriptAdipoR-RA
Protein status:LD23846.pep: gold
Preliminary Size:1300
Sequenced Size:1785

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5315 2001-01-01 Release 2 assignment
CG5315 2002-07-13 Blastp of sequenced clone
CG5315 2003-01-01 Sim4 clustering to Release 3
CG5315 2008-04-29 Release 5.5 accounting
CG5315 2008-08-15 Release 5.9 accounting
CG5315 2008-12-18 5.12 accounting

Clone Sequence Records

LD23846.complete Sequence

1785 bp (1785 high quality bases) assembled on 2002-07-13

GenBank Submission: BT001487

> LD23846.complete
TCACACTGGAAAAAACACAGAAAAAATTAAATTAAGGGAAAACAGATGAA
AAACTGCAATTGCACGCAATTGAAGCAAGTGCAGCAAATAGTTTTTCGCG
CCAGTGTTGACTCCTGGGCCTGCCGTCGAAGCCACGCCAACTGCGCGACT
TTCGAGTGAATACTATTTGCGGAGTGCAAAACGAATCCGCGGGATCGTAA
GACCATGGATTCGGCCACTAATCTCCTCGAGCAACAGGGCTCAGCGGCTG
ATGTGAGTGGCGGGAGCCATCCCGCCGAGGTGGAGGTAACCACCCAGGCT
CGAGCCACTTTCGGCATGGACGCCGAAGGACATGCTACCGGCGAGGCGGT
GACCACCACCACGGCCACCTTGCGTAGAGAAGGTTCAGACGAGGATATCT
TTGAGCAGGTGCAGATGATCCTGCGCAAGCGACGTGGCTGGGGACCGGAG
GACTCGCTTAGCCCCAATGATCTGGACATTCTGGAGTACGACGATGAGTT
GGTCGAGGAGGATGACGCCGGTTGTCCACTCCCCTCGACCCCGGAGGACA
CACAGCTTATTGAGGCGGAGATGACGGAAGTGCTGAAGGCCGGAGTTCTC
TCCGATGAAATTGATTTGGGCGCATTGGCACACAATGCCGCCGAGCAGGC
AGAGGAGTTTGTGCGCAAGGTCTGGGAGGCTAGCTGGAAAGTGTGCCACT
ACAAAAATCTACCCAAGTGGCTGCAGGATAACGACTTCCTACACCGCGGC
CATCGCCCACCGCTCCCCTCTTTCCGTGCGTGCTTTAAATCAATTTTCCG
CGTGCACACGGAAACGGGCAACATCTGGACACATCTTCTTGGCTGCATCG
CCTTCATCGGCGTGGCATTATACTTCATCTCGCGTCCCTCGGTTGAGATC
CAGACACAGGAGAAGATCGTTTTTGGCGCCTTCTTTATCGGTGCGATTGT
GTGCCTAGGATTCTCATTCGCTTTTCACACACTGAGCTGTCATTCTGTAG
AGATGGGAAGACTGTTTTCTAAACTTGACTACTGTGGAATTGCGCTGCTG
ATCATGGGTTCCTTTGTGCCTTGGCTGTACTATGGCTTCTACTGTCATTA
CCAGCCAAAGGTGATATACCTATCCGTTGTTAGCATTCTGGGCATCCTCT
CCATCGTGGTCTCGCTATGGGACAAGTTTTCGGAGCCGGCACTTCGTCCC
TTGCGCGCTGGCGTATTTATGAGCTTTGGCCTGTCGGGTGTGATTCCAGC
TATTCACTACAGCATCATGGAGGGCTGGTTCAGCCAGATGAGCCGCGCCA
GTCTGGGATGGCTAATTCTGATGGGCCTCCTCTACATTCTGGGCGCACTG
CTGTACGCCCTCCGTGTTCCCGAACGCTGGTTCCCTGGAAAGTTTGACAT
TTGGGGTCAATCACATCAAATATTCCACATACTGGTCATTGCGGCCGCTT
TTGTCCACTACCATGGCATCTCTGAAATGGCCATGTACCGCGTCATGTAT
AGCGAATGCACTGTTCCCATCGAACCAATAACCTTTTAGATGCTGAAGTG
GATGCCAAGAAACAATCATCGTAAAAGCACATACAATCCCATTCATAGTA
CGAGTAAAACATATATTAATGCGAACTAGCGCAGTTTTACAATGCAACCT
TTTTAGCGTTTGGGGAGCATTTGTACCTTGTTATACAAAATCAACGGAAC
CATATAGAAGACAAAAACACACACTTAACACACAATTACACGCATTTATC
ATCAAAATCTTGCATAGAAAAAAAAAAAAAAAAAA

LD23846.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5315-RA 2603 CG5315-RA 231..2008 1..1778 8890 100 Plus
CG5315.e 2603 CG5315.e 231..2008 1..1778 8890 100 Plus
CG5315.c 2175 CG5315.c 69..1689 158..1778 8105 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18370241..18370657 574..158 2025 99 Minus
chr3R 27901430 chr3R 18367717..18368080 1767..1404 1820 100 Minus
chr3R 27901430 chr3R 18368640..18368994 1022..668 1775 100 Minus
chr3R 27901430 chr3R 18368279..18368581 1325..1023 1485 99.3 Minus
chr3R 27901430 chr3R 18371191..18371348 158..1 775 99.4 Minus
chr3R 27901430 chr3R 18369205..18369307 671..569 515 100 Minus
chr3R 27901430 chr3R 18368136..18368217 1405..1324 410 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22546708..22547124 574..158 2070 99.8 Minus
3R 32079331 3R 22544184..22544558 1778..1404 1875 100 Minus
3R 32079331 3R 22545118..22545472 1022..668 1775 100 Minus
3R 32079331 3R 22544757..22545059 1325..1023 1515 100 Minus
3R 32079331 3R 22547659..22547816 158..1 790 100 Minus
3R 32079331 3R 22545683..22545785 671..569 515 100 Minus
3R 32079331 3R 22544614..22544695 1405..1324 410 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22287539..22287955 574..158 2070 99.7 Minus
3R 31820162 3R 22285015..22285389 1778..1404 1875 100 Minus
3R 31820162 3R 22285949..22286303 1022..668 1775 100 Minus
3R 31820162 3R 22285588..22285890 1325..1023 1515 100 Minus
3R 31820162 3R 22288490..22288647 158..1 790 100 Minus
3R 31820162 3R 22286514..22286616 671..569 515 100 Minus
3R 31820162 3R 22285445..22285526 1405..1324 410 100 Minus
Blast to na_te.dros performed 2019-03-16 16:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 617..684 1679..1744 127 69.1 Plus
Dbuz\BuT6 387 Dbuz\BuT6 BUT6 387bp 152..188 1041..1077 113 78.4 Plus

LD23846.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:36:02 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18367717..18368079 1405..1767 100 <- Minus
chr3R 18368137..18368216 1325..1404 100 <- Minus
chr3R 18368280..18368581 1023..1324 99 <- Minus
chr3R 18368640..18368992 670..1022 100 <- Minus
chr3R 18369207..18369305 571..669 100 <- Minus
chr3R 18370245..18370656 159..570 99 <- Minus
chr3R 18371191..18371348 1..158 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:08 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 1..1335 205..1539 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:17:06 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 1..1335 205..1539 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:52 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 1..1335 205..1539 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:08:18 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 1..1335 205..1539 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:34:37 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
AdipoR-RA 1..1335 205..1539 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:41:19 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 30..1796 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:17:06 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 30..1796 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:52 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 31..1797 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:08:18 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 30..1796 1..1767 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:34:37 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
AdipoR-RA 31..1797 1..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:02 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22544195..22544557 1405..1767 100 <- Minus
3R 22544615..22544694 1325..1404 100 <- Minus
3R 22544758..22545059 1023..1324 100 <- Minus
3R 22545118..22545470 670..1022 100 <- Minus
3R 22545685..22545783 571..669 100 <- Minus
3R 22546712..22547123 159..570 100 <- Minus
3R 22547659..22547816 1..158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:02 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22544195..22544557 1405..1767 100 <- Minus
3R 22544615..22544694 1325..1404 100 <- Minus
3R 22544758..22545059 1023..1324 100 <- Minus
3R 22545118..22545470 670..1022 100 <- Minus
3R 22545685..22545783 571..669 100 <- Minus
3R 22546712..22547123 159..570 100 <- Minus
3R 22547659..22547816 1..158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:02 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22544195..22544557 1405..1767 100 <- Minus
3R 22544615..22544694 1325..1404 100 <- Minus
3R 22544758..22545059 1023..1324 100 <- Minus
3R 22545118..22545470 670..1022 100 <- Minus
3R 22545685..22545783 571..669 100 <- Minus
3R 22546712..22547123 159..570 100 <- Minus
3R 22547659..22547816 1..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:52 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18369917..18370279 1405..1767 100 <- Minus
arm_3R 18370337..18370416 1325..1404 100 <- Minus
arm_3R 18370480..18370781 1023..1324 100 <- Minus
arm_3R 18370840..18371192 670..1022 100 <- Minus
arm_3R 18371407..18371505 571..669 100 <- Minus
arm_3R 18372434..18372845 159..570 100 <- Minus
arm_3R 18373381..18373538 1..158 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:40:13 Download gff for LD23846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22285446..22285525 1325..1404 100 <- Minus
3R 22285589..22285890 1023..1324 100 <- Minus
3R 22285949..22286301 670..1022 100 <- Minus
3R 22286516..22286614 571..669 100 <- Minus
3R 22285026..22285388 1405..1767 100 <- Minus
3R 22287543..22287954 159..570 100 <- Minus
3R 22288490..22288647 1..158 100   Minus

LD23846.pep Sequence

Translation from 204 to 1538

> LD23846.pep
MDSATNLLEQQGSAADVSGGSHPAEVEVTTQARATFGMDAEGHATGEAVT
TTTATLRREGSDEDIFEQVQMILRKRRGWGPEDSLSPNDLDILEYDDELV
EEDDAGCPLPSTPEDTQLIEAEMTEVLKAGVLSDEIDLGALAHNAAEQAE
EFVRKVWEASWKVCHYKNLPKWLQDNDFLHRGHRPPLPSFRACFKSIFRV
HTETGNIWTHLLGCIAFIGVALYFISRPSVEIQTQEKIVFGAFFIGAIVC
LGFSFAFHTLSCHSVEMGRLFSKLDYCGIALLIMGSFVPWLYYGFYCHYQ
PKVIYLSVVSILGILSIVVSLWDKFSEPALRPLRAGVFMSFGLSGVIPAI
HYSIMEGWFSQMSRASLGWLILMGLLYILGALLYALRVPERWFPGKFDIW
GQSHQIFHILVIAAAFVHYHGISEMAMYRVMYSECTVPIEPITF*

LD23846.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16147-PA 503 GF16147-PA 1..503 1..444 2039 78.7 Plus
Dana\GF18132-PA 348 GF18132-PA 1..346 85..439 368 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12506-PA 483 GG12506-PA 1..483 1..444 2245 91.3 Plus
Dere\GG21110-PA 351 GG21110-PA 5..349 108..439 391 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17396-PA 440 GH17396-PA 1..440 1..444 1873 80.6 Plus
Dgri\GH14088-PA 355 GH14088-PA 63..353 144..439 339 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
AdipoR-PE 444 CG5315-PE 1..444 1..444 2351 100 Plus
AdipoR-PD 444 CG5315-PD 1..444 1..444 2351 100 Plus
AdipoR-PA 444 CG5315-PA 1..444 1..444 2351 100 Plus
AdipoR-PC 444 CG5315-PC 1..444 1..444 2351 100 Plus
AdipoR-PB 362 CG5315-PB 29..362 110..444 1728 97.3 Plus
CG7530-PC 351 CG7530-PC 1..349 85..439 419 28.6 Plus
CG7530-PB 351 CG7530-PB 1..349 85..439 419 28.6 Plus
CG7530-PA 351 CG7530-PA 1..349 85..439 419 28.6 Plus
CG7530-PD 341 CG7530-PD 59..339 155..439 411 31.1 Plus
CG33203-PD 450 CG33203-PD 177..416 166..416 200 27.3 Plus
CG33203-PE 453 CG33203-PE 177..419 166..416 196 26.9 Plus
CG33203-PF 500 CG33203-PF 177..419 166..416 196 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22724-PA 440 GI22724-PA 1..440 1..444 1884 80.9 Plus
Dmoj\GI10620-PA 362 GI10620-PA 70..360 144..439 352 28.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13682-PA 371 GL13682-PA 9..371 81..444 1709 88 Plus
Dper\GL23669-PA 357 GL23669-PA 83..355 163..439 358 30.6 Plus
Dper\GL13681-PA 116 GL13681-PA 1..109 1..114 336 64.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18798-PB 439 GA18798-PB 1..439 1..444 2057 88.1 Plus
Dpse\GA18798-PA 484 GA18798-PA 1..484 1..444 2005 80.1 Plus
Dpse\GA30161-PB 521 GA30161-PB 247..487 165..416 201 27.2 Plus
Dpse\GA30161-PA 524 GA30161-PA 247..490 165..416 198 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23638-PA 484 GM23638-PA 1..484 1..444 2326 91.7 Plus
Dsec\GM25830-PA 351 GM25830-PA 1..349 85..439 392 27.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18448-PA 483 GD18448-PA 1..483 1..444 2303 91.3 Plus
Dsim\GD20404-PA 351 GD20404-PA 1..349 85..439 396 27.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24663-PA 429 GJ24663-PA 1..429 1..444 1841 81.8 Plus
Dvir\GJ22972-PA 356 GJ22972-PA 63..345 144..430 346 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14433-PA 438 GK14433-PA 1..438 1..444 2029 84.8 Plus
Dwil\GK11690-PA 359 GK11690-PA 85..357 163..439 358 29.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24027-PA 480 GE24027-PA 1..480 1..444 2248 89.3 Plus
Dyak\GE26431-PA 355 GE26431-PA 62..353 144..439 391 29 Plus

LD23846.hyp Sequence

Translation from 204 to 1538

> LD23846.hyp
MDSATNLLEQQGSAADVSGGSHPAEVEVTTQARATFGMDAEGHATGEAVT
TTTATLRREGSDEDIFEQVQMILRKRRGWGPEDSLSPNDLDILEYDDELV
EEDDAGCPLPSTPEDTQLIEAEMTEVLKAGVLSDEIDLGALAHNAAEQAE
EFVRKVWEASWKVCHYKNLPKWLQDNDFLHRGHRPPLPSFRACFKSIFRV
HTETGNIWTHLLGCIAFIGVALYFISRPSVEIQTQEKIVFGAFFIGAIVC
LGFSFAFHTLSCHSVEMGRLFSKLDYCGIALLIMGSFVPWLYYGFYCHYQ
PKVIYLSVVSILGILSIVVSLWDKFSEPALRPLRAGVFMSFGLSGVIPAI
HYSIMEGWFSQMSRASLGWLILMGLLYILGALLYALRVPERWFPGKFDIW
GQSHQIFHILVIAAAFVHYHGISEMAMYRVMYSECTVPIEPITF*

LD23846.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
AdipoR-PE 444 CG5315-PE 1..444 1..444 2351 100 Plus
AdipoR-PD 444 CG5315-PD 1..444 1..444 2351 100 Plus
AdipoR-PA 444 CG5315-PA 1..444 1..444 2351 100 Plus
AdipoR-PC 444 CG5315-PC 1..444 1..444 2351 100 Plus
AdipoR-PB 362 CG5315-PB 29..362 110..444 1728 97.3 Plus