BDGP Sequence Production Resources |
Search the DGRC for LD23856
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 238 |
Well: | 56 |
Vector: | pOT2 |
Associated Gene/Transcript | CG8520-RA |
Protein status: | LD23856.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1709 |
Gene | Date | Evidence |
---|---|---|
CG8520 | 2001-07-04 | Blastp of sequenced clone |
CG8520 | 2008-04-29 | Release 5.5 accounting |
CG8520 | 2008-08-15 | Release 5.9 accounting |
CG8520 | 2008-12-18 | 5.12 accounting |
1709 bp (1709 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051691
> LD23856.complete CCGAAATTCGCGGTCAAAATTCGCGGAAGTGAGGTCTCTAGTTTTATGTA ATGTCTAGATGACGCGGATTTAGCTCCTAGTTAAGCGCTAATTGTGGCAC TCTGCTATGTTCACCTACCAACTGGGGCTTGTGGTCCGCTGTGCGCGGCA GAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGCGGTCTCAGTC CGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACTGATGACCGAC AACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGTACCACAAGAT TCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGCGGAGGATTCT TCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGACGATCAGGAT GATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACCTGTACGGCAG CGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTCGACTGCTGTA CCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTTCATGAACACC GTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGACCTGTTGACCG TGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACAAAACCGGTTG CTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGATGAATTTCAG GTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGTTTACGCACCT TTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGGCATCCAGAGG ATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCCCTTCATTGCG TTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTATTGACTACCG ACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAAGGCCAAACGG ATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTGCGCCGAAGAA AACGATATTATCCGGCCGCGAACCCTGACTCATTTCGGAAGAGATCTGAC CTTCAATCGCACGTGTGGCCAGGTACTGGACAGCACCTTCTCGGAACTCT GTGATCGCCCTTTGGCTGGCAGTGATTTCTTACAGATATCGCAATTCTTT CACACCGTCCTCATCCGAGATGTGCCCCAGCTGACCCTTGATGTGAAGGC ACAGATGCGACGATTTATCACGCTCATAGATACCCTTTACAATAACCGAG TGCGTGTGGTGATATCATCCGACGTTGCGCTGGAAAACTTGTTCAGCTTT ACTGGAGGTTCCAAAACTCTGTCCGATTCTGAGCGAACCCTAATGGACGA TCTAAATATAAAAGAATCCAAAGCCAGTTTTTTCACCGGCGAGGAAGAGC TGTTCGCCTTTGATCGCACACTATCTCGACTCTATGAAATGCAGAAGAGG GAGTACTGGGAGCAGTGGGCCAAACATCGATGAAAACCCCTTGTCACAAA GCAGTAGTTCAATTAGCGCTATAAAAATTACATGTTTTCTACCTCGCTGA CGCGGTATTTTAAAATTCACAATATCTTGTACTTACAAATTTCATATCGA AAATGCAATATTAAAATTAGGTGTATTTCGCAAGTATTAAGACAATAAAA AATAGACAAAGTTACCTAAGCGATTGGCTTTATTAAACAGCAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8520-RA | 2085 | CG8520-RA | 390..2082 | 1..1693 | 8465 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 8311414..8312016 | 506..1108 | 3015 | 100 | Plus |
chr2R | 21145070 | chr2R | 8310852..8311356 | 1..505 | 2525 | 100 | Plus |
chr2R | 21145070 | chr2R | 8312377..8312707 | 1361..1691 | 1655 | 100 | Plus |
chr2R | 21145070 | chr2R | 8312071..8312322 | 1109..1360 | 1260 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12424166..12424768 | 506..1108 | 3015 | 100 | Plus |
2R | 25286936 | 2R | 12423604..12424108 | 1..505 | 2525 | 100 | Plus |
2R | 25286936 | 2R | 12425129..12425461 | 1361..1693 | 1665 | 100 | Plus |
2R | 25286936 | 2R | 12424823..12425074 | 1109..1360 | 1260 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12425365..12425967 | 506..1108 | 3015 | 100 | Plus |
2R | 25260384 | 2R | 12424803..12425307 | 1..505 | 2525 | 100 | Plus |
2R | 25260384 | 2R | 12426328..12426660 | 1361..1693 | 1665 | 100 | Plus |
2R | 25260384 | 2R | 12426022..12426273 | 1109..1360 | 1260 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 4109..4170 | 1617..1556 | 112 | 64.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8310852..8311356 | 1..505 | 100 | -> | Plus |
chr2R | 8311414..8312016 | 506..1108 | 100 | -> | Plus |
chr2R | 8312071..8312322 | 1109..1360 | 100 | -> | Plus |
chr2R | 8312377..8312707 | 1361..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RA | 1..1377 | 107..1483 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RB | 1..1377 | 107..1483 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RA | 1..1377 | 107..1483 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RA | 1..1377 | 107..1483 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RA | 1..1377 | 107..1483 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RA | 390..2080 | 1..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RB | 58..1748 | 1..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RA | 444..2134 | 1..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RA | 390..2080 | 1..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8520-RA | 444..2134 | 1..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12423604..12424108 | 1..505 | 100 | -> | Plus |
2R | 12424166..12424768 | 506..1108 | 100 | -> | Plus |
2R | 12424823..12425074 | 1109..1360 | 100 | -> | Plus |
2R | 12425129..12425459 | 1361..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12423604..12424108 | 1..505 | 100 | -> | Plus |
2R | 12424166..12424768 | 506..1108 | 100 | -> | Plus |
2R | 12424823..12425074 | 1109..1360 | 100 | -> | Plus |
2R | 12425129..12425459 | 1361..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12423604..12424108 | 1..505 | 100 | -> | Plus |
2R | 12424166..12424768 | 506..1108 | 100 | -> | Plus |
2R | 12424823..12425074 | 1109..1360 | 100 | -> | Plus |
2R | 12425129..12425459 | 1361..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8311109..8311613 | 1..505 | 100 | -> | Plus |
arm_2R | 8311671..8312273 | 506..1108 | 100 | -> | Plus |
arm_2R | 8312328..8312579 | 1109..1360 | 100 | -> | Plus |
arm_2R | 8312634..8312964 | 1361..1691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12426328..12426658 | 1361..1691 | 100 | Plus | |
2R | 12424803..12425307 | 1..505 | 100 | -> | Plus |
2R | 12425365..12425967 | 506..1108 | 100 | -> | Plus |
2R | 12426022..12426273 | 1109..1360 | 100 | -> | Plus |
Translation from 106 to 1482
> LD23856.hyp MFTYQLGLVVRCARQKPLLLWAPACHMSGLSPLKEYEKRVSSGQLMTDNR QLQTMKELDALYHKIQGYKPSYRAGGGGGGFFSSIFGRKSSTEDDDQDDP NAGSHAPQGLYLYGSVGVGKTTLMDLFFDCCTQIHRKQRVHFTSFMNTVH TRIHEAKQRQGPVDRAFNSEKPAPFDPTKPVADLIASESWLICFDEFQVT DIADAMVLKRLFTHLFRHGIVVVATSNRHPEDLYKNGLQRTNFLPFIALL QRRCKVSQLDSIDYRRIAQSGDTNYFVKGQTDADGSMNRMFKILCAEEND IIRPRTLTHFGRDLTFNRTCGQVLDSTFSELCDRPLAGSDFLQISQFFHT VLIRDVPQLTLDVKAQMRRFITLIDTLYNNRVRVVISSDVALENLFSFTG GSKTLSDSERTLMDDLNIKESKASFFTGEEELFAFDRTLSRLYEMQKREY WEQWAKHR*
Translation from 106 to 1482
> LD23856.pep MFTYQLGLVVRCARQKPLLLWAPACHMSGLSPLKEYEKRVSSGQLMTDNR QLQTMKELDALYHKIQGYKPSYRAGGGGGGFFSSIFGRKSSTEDDDQDDP NAGSHAPQGLYLYGSVGVGKTTLMDLFFDCCTQIHRKQRVHFTSFMNTVH TRIHEAKQRQGPVDRAFNSEKPAPFDPTKPVADLIASESWLICFDEFQVT DIADAMVLKRLFTHLFRHGIVVVATSNRHPEDLYKNGLQRTNFLPFIALL QRRCKVSQLDSIDYRRIAQSGDTNYFVKGQTDADGSMNRMFKILCAEEND IIRPRTLTHFGRDLTFNRTCGQVLDSTFSELCDRPLAGSDFLQISQFFHT VLIRDVPQLTLDVKAQMRRFITLIDTLYNNRVRVVISSDVALENLFSFTG GSKTLSDSERTLMDDLNIKESKASFFTGEEELFAFDRTLSRLYEMQKREY WEQWAKHR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12865-PA | 461 | GF12865-PA | 1..461 | 1..458 | 1976 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20302-PA | 459 | GG20302-PA | 1..459 | 1..458 | 2242 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21203-PA | 443 | GH21203-PA | 2..443 | 15..458 | 1822 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8520-PB | 458 | CG8520-PB | 1..458 | 1..458 | 2407 | 100 | Plus |
CG8520-PA | 458 | CG8520-PA | 1..458 | 1..458 | 2407 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20492-PA | 464 | GI20492-PA | 1..464 | 1..458 | 1740 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11188-PA | 468 | GL11188-PA | 1..468 | 1..458 | 1883 | 78 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21133-PA | 468 | GA21133-PA | 1..468 | 1..458 | 1879 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21389-PA | 458 | GM21389-PA | 1..458 | 1..458 | 2446 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10885-PA | 458 | GD10885-PA | 1..458 | 1..458 | 2449 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22342-PA | 464 | GJ22342-PA | 1..464 | 1..458 | 1815 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21407-PA | 471 | GK21407-PA | 1..471 | 1..458 | 1903 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12462-PA | 459 | GE12462-PA | 1..459 | 1..458 | 2406 | 96.9 | Plus |