Clone LD23856 Report

Search the DGRC for LD23856

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:238
Well:56
Vector:pOT2
Associated Gene/TranscriptCG8520-RA
Protein status:LD23856.pep: gold
Preliminary Size:2200
Sequenced Size:1709

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8520 2001-07-04 Blastp of sequenced clone
CG8520 2008-04-29 Release 5.5 accounting
CG8520 2008-08-15 Release 5.9 accounting
CG8520 2008-12-18 5.12 accounting

Clone Sequence Records

LD23856.complete Sequence

1709 bp (1709 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051691

> LD23856.complete
CCGAAATTCGCGGTCAAAATTCGCGGAAGTGAGGTCTCTAGTTTTATGTA
ATGTCTAGATGACGCGGATTTAGCTCCTAGTTAAGCGCTAATTGTGGCAC
TCTGCTATGTTCACCTACCAACTGGGGCTTGTGGTCCGCTGTGCGCGGCA
GAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGCGGTCTCAGTC
CGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACTGATGACCGAC
AACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGTACCACAAGAT
TCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGCGGAGGATTCT
TCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGACGATCAGGAT
GATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACCTGTACGGCAG
CGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTCGACTGCTGTA
CCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTTCATGAACACC
GTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGACCTGTTGACCG
TGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACAAAACCGGTTG
CTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGATGAATTTCAG
GTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGTTTACGCACCT
TTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGGCATCCAGAGG
ATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCCCTTCATTGCG
TTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTATTGACTACCG
ACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAAGGCCAAACGG
ATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTGCGCCGAAGAA
AACGATATTATCCGGCCGCGAACCCTGACTCATTTCGGAAGAGATCTGAC
CTTCAATCGCACGTGTGGCCAGGTACTGGACAGCACCTTCTCGGAACTCT
GTGATCGCCCTTTGGCTGGCAGTGATTTCTTACAGATATCGCAATTCTTT
CACACCGTCCTCATCCGAGATGTGCCCCAGCTGACCCTTGATGTGAAGGC
ACAGATGCGACGATTTATCACGCTCATAGATACCCTTTACAATAACCGAG
TGCGTGTGGTGATATCATCCGACGTTGCGCTGGAAAACTTGTTCAGCTTT
ACTGGAGGTTCCAAAACTCTGTCCGATTCTGAGCGAACCCTAATGGACGA
TCTAAATATAAAAGAATCCAAAGCCAGTTTTTTCACCGGCGAGGAAGAGC
TGTTCGCCTTTGATCGCACACTATCTCGACTCTATGAAATGCAGAAGAGG
GAGTACTGGGAGCAGTGGGCCAAACATCGATGAAAACCCCTTGTCACAAA
GCAGTAGTTCAATTAGCGCTATAAAAATTACATGTTTTCTACCTCGCTGA
CGCGGTATTTTAAAATTCACAATATCTTGTACTTACAAATTTCATATCGA
AAATGCAATATTAAAATTAGGTGTATTTCGCAAGTATTAAGACAATAAAA
AATAGACAAAGTTACCTAAGCGATTGGCTTTATTAAACAGCAAAAAAAAA
AAAAAAAAA

LD23856.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-RA 2085 CG8520-RA 390..2082 1..1693 8465 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8311414..8312016 506..1108 3015 100 Plus
chr2R 21145070 chr2R 8310852..8311356 1..505 2525 100 Plus
chr2R 21145070 chr2R 8312377..8312707 1361..1691 1655 100 Plus
chr2R 21145070 chr2R 8312071..8312322 1109..1360 1260 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12424166..12424768 506..1108 3015 100 Plus
2R 25286936 2R 12423604..12424108 1..505 2525 100 Plus
2R 25286936 2R 12425129..12425461 1361..1693 1665 100 Plus
2R 25286936 2R 12424823..12425074 1109..1360 1260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12425365..12425967 506..1108 3015 100 Plus
2R 25260384 2R 12424803..12425307 1..505 2525 100 Plus
2R 25260384 2R 12426328..12426660 1361..1693 1665 100 Plus
2R 25260384 2R 12426022..12426273 1109..1360 1260 100 Plus
Blast to na_te.dros performed 2019-03-15 18:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 4109..4170 1617..1556 112 64.5 Minus

LD23856.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:57 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8310852..8311356 1..505 100 -> Plus
chr2R 8311414..8312016 506..1108 100 -> Plus
chr2R 8312071..8312322 1109..1360 100 -> Plus
chr2R 8312377..8312707 1361..1691 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:09 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 1..1377 107..1483 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:07 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RB 1..1377 107..1483 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:58 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 1..1377 107..1483 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:46 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 1..1377 107..1483 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:17 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 1..1377 107..1483 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:18 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 390..2080 1..1691 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:07 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RB 58..1748 1..1691 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:58 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 444..2134 1..1691 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:02 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 390..2080 1..1691 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:17 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 444..2134 1..1691 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:57 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12423604..12424108 1..505 100 -> Plus
2R 12424166..12424768 506..1108 100 -> Plus
2R 12424823..12425074 1109..1360 100 -> Plus
2R 12425129..12425459 1361..1691 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:57 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12423604..12424108 1..505 100 -> Plus
2R 12424166..12424768 506..1108 100 -> Plus
2R 12424823..12425074 1109..1360 100 -> Plus
2R 12425129..12425459 1361..1691 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:57 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12423604..12424108 1..505 100 -> Plus
2R 12424166..12424768 506..1108 100 -> Plus
2R 12424823..12425074 1109..1360 100 -> Plus
2R 12425129..12425459 1361..1691 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:58 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8311109..8311613 1..505 100 -> Plus
arm_2R 8311671..8312273 506..1108 100 -> Plus
arm_2R 8312328..8312579 1109..1360 100 -> Plus
arm_2R 8312634..8312964 1361..1691 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:28 Download gff for LD23856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12426328..12426658 1361..1691 100   Plus
2R 12424803..12425307 1..505 100 -> Plus
2R 12425365..12425967 506..1108 100 -> Plus
2R 12426022..12426273 1109..1360 100 -> Plus

LD23856.hyp Sequence

Translation from 106 to 1482

> LD23856.hyp
MFTYQLGLVVRCARQKPLLLWAPACHMSGLSPLKEYEKRVSSGQLMTDNR
QLQTMKELDALYHKIQGYKPSYRAGGGGGGFFSSIFGRKSSTEDDDQDDP
NAGSHAPQGLYLYGSVGVGKTTLMDLFFDCCTQIHRKQRVHFTSFMNTVH
TRIHEAKQRQGPVDRAFNSEKPAPFDPTKPVADLIASESWLICFDEFQVT
DIADAMVLKRLFTHLFRHGIVVVATSNRHPEDLYKNGLQRTNFLPFIALL
QRRCKVSQLDSIDYRRIAQSGDTNYFVKGQTDADGSMNRMFKILCAEEND
IIRPRTLTHFGRDLTFNRTCGQVLDSTFSELCDRPLAGSDFLQISQFFHT
VLIRDVPQLTLDVKAQMRRFITLIDTLYNNRVRVVISSDVALENLFSFTG
GSKTLSDSERTLMDDLNIKESKASFFTGEEELFAFDRTLSRLYEMQKREY
WEQWAKHR*

LD23856.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-PB 458 CG8520-PB 1..458 1..458 2407 100 Plus
CG8520-PA 458 CG8520-PA 1..458 1..458 2407 100 Plus

LD23856.pep Sequence

Translation from 106 to 1482

> LD23856.pep
MFTYQLGLVVRCARQKPLLLWAPACHMSGLSPLKEYEKRVSSGQLMTDNR
QLQTMKELDALYHKIQGYKPSYRAGGGGGGFFSSIFGRKSSTEDDDQDDP
NAGSHAPQGLYLYGSVGVGKTTLMDLFFDCCTQIHRKQRVHFTSFMNTVH
TRIHEAKQRQGPVDRAFNSEKPAPFDPTKPVADLIASESWLICFDEFQVT
DIADAMVLKRLFTHLFRHGIVVVATSNRHPEDLYKNGLQRTNFLPFIALL
QRRCKVSQLDSIDYRRIAQSGDTNYFVKGQTDADGSMNRMFKILCAEEND
IIRPRTLTHFGRDLTFNRTCGQVLDSTFSELCDRPLAGSDFLQISQFFHT
VLIRDVPQLTLDVKAQMRRFITLIDTLYNNRVRVVISSDVALENLFSFTG
GSKTLSDSERTLMDDLNIKESKASFFTGEEELFAFDRTLSRLYEMQKREY
WEQWAKHR*

LD23856.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12865-PA 461 GF12865-PA 1..461 1..458 1976 79 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20302-PA 459 GG20302-PA 1..459 1..458 2242 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21203-PA 443 GH21203-PA 2..443 15..458 1822 76.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-PB 458 CG8520-PB 1..458 1..458 2407 100 Plus
CG8520-PA 458 CG8520-PA 1..458 1..458 2407 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20492-PA 464 GI20492-PA 1..464 1..458 1740 72.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11188-PA 468 GL11188-PA 1..468 1..458 1883 78 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21133-PA 468 GA21133-PA 1..468 1..458 1879 77.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21389-PA 458 GM21389-PA 1..458 1..458 2446 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10885-PA 458 GD10885-PA 1..458 1..458 2449 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22342-PA 464 GJ22342-PA 1..464 1..458 1815 73.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21407-PA 471 GK21407-PA 1..471 1..458 1903 74.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12462-PA 459 GE12462-PA 1..459 1..458 2406 96.9 Plus