Clone LD23868 Report

Search the DGRC for LD23868

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:238
Well:68
Vector:pOT2
Associated Gene/TranscriptCG16721-RA
Protein status:LD23868.pep: gold
Preliminary Size:2200
Sequenced Size:2531

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16721 2001-01-01 Release 2 assignment
CG16721 2001-09-19 Blastp of sequenced clone
CG16721 2003-01-01 Sim4 clustering to Release 3
CG16721 2008-04-29 Release 5.5 accounting
CG16721 2008-08-15 Release 5.9 accounting
CG16721 2008-12-18 5.12 accounting

Clone Sequence Records

LD23868.complete Sequence

2531 bp (2531 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058533

> LD23868.complete
CAACAACCAAAGTTTTCAATCGAAACGGAAACATTCGGATATCAGTCGTC
GTTCTTAATAGTTCAGATTAGAATAAAAATCCTCCTGGAGGAGCATAATT
GAGTGAAAATTAACTGCAAAATTTGTCTGTGATTGTGGAAAGTGAATCAG
CTGTTTGGGAAAAGTAAAACGGAATACTCTGGAACCTTCTCGTCGTTTCT
TCCTATTGCGAACTGACCCCGAGCGGAGCTTTAGCGACGACCTCGAACAA
AGAACAAAGAAAGCCCGAGTGCAGTTGCCAATTGCCTTGTAATAATCACC
AAGCCATATATACAACTGGCTCTAACCGGTGGTAACCAAATTCGCATTTG
GTCGAAACCAGTTGCTGCAGCTGCCTAACGTCGCACTTCCGCCCGTGAGG
AGACAACAAAGGACTGGAATTTGAATATGGATGCCCAGGAGAATAGGAGT
GAACAGTCGGGACAATCGGGCGACCACGAAGAGCACGAGGAGCGCCGGAT
CCGTACGGACAGCGAGAGTTCCGTGGAAAGCATGACGCGTTTCGTGCTGC
CCAGCTTGGATGGTACTCCGCCGAAAATTGTGACCCTGGACGAAGTGTCC
AGCATGTTCAAGAATTTGCGCAACATGGAGCTGGCCCACGAGATAGCCCT
CAATCCGGACTTCAAGCTGCAGAAGTACGAGCCGCCCTCGGATAGTTTGG
AGGGCGCCATCAAGAAGATGGTGCACAAGGCCTTTTGGGATCTGCTGCGT
GTGCAGCTGGACCGCCAGCCGCCATCGTATGATCAGGCCATCCGGCTGCT
GGCTGAGATCAAGGAGTGCTTCCCGCAGCTGCTGTCGCCCAACAACGAAC
GTGCCCTGGCCCACATCAACGAGGTGCTGGATGACTCCGTCATCCGCCAG
CAAGCGGAGCGGGGTACCCTGGACTTTCGAGCATATGCCAACTTTGTGAT
CAACATCCTGTCGCGATCCTGTTCGCCAGCTAGGGACGAAGCAGTGGCCG
CTCTGCGCAAGATCGACGATGTGGTGGACACGTTTCGCTGCATTCTCGAG
CTGATGACGCTGATGAAGCTGGATATGGCCAACTTTATGCTTCGACTGGC
GCGCACCGAAATCGCTGCCAATTCGGTGCAGTATGAGAAGGAGAAGTTTA
GCAAGTACTTGCGCGAGTTCCATGGAAATGTTGGTTTTCCGGCCACTGAG
GATTGGCTGCAGCGTCACCGGTCCGGTAGCAGCGATGATGAGACCATTTA
CAATGCCTACATGCAGCTGATTGACTATCCGGCCGACAAGGAGTTCCCGG
AGCTGTTGCGCATCGACAAAGAGCGCTTCGCCGGCCTAAGTTGGCGAGCC
CAGCGCTTGATCCTGTGCGCCTCGCTCATCTCGGTGGCCCAGGGCATGCC
TATCATATCGCAGCGCCGCGAGAACCGCATCAAGCTGGCCCAGCAGCTGG
ACATCATTGTGCAGGACATCAAGAACCAGGACCAAGTGGCCTCTACCATT
GAGAGCTGCTACGAGCAGATTCGCTCCTTTGTGAACAAGGCCCTGGAGCA
GGAGAACTTGCCTGCGCTGAGTGATGCCGACCAGGCGGCGCTCAAGAACC
AGGTGCTTAAGCTGGCCAACAAGACGTCGCCGGTGCCCAGTTTGATGGCC
AAACGATTGGATGGCTATGTGCGCGTAACACTGCGCTCCAATGGCAGCAT
TCCGCCGCCGCCCTCAGGATTCGCGGACTACCAAGAGGAGCTGGTTGCAT
TTATCGCCTCGTTCCGTCGTCTGGTGTCCTACAACCACGCCGTGTTCGGG
GAGCACTTCCACCAGATACTCAACAAAACGCTGCCCGGTGAGGAAACGGA
GGCTACCACTTCCACGGCCAGTGGCATAAATCCTGGCCAGGCTCAGACTG
CCAAGCCTTAGGTGGATTTGTCTACCGTCTTAGGCAACACAAGATACCAG
TATACAACACTCAGACACACCTGTAGGCGAACAACAGATCTGGCGGAGAT
CTGCATGATGTTAGGGCAACCGGAGTGGCGGATAGCATCTTCCGTGTGGA
GGAGGAGGGATTCCGCATTCCGCAGCTGCTTTCCCATGTGACGTGACACT
TGCGTAGAAAATTTGACGCACGCACCCGTAACCACCAAGTAGAAATGAGT
ACTCCAGATGCAAATCCCCCTGCAAAAAAGCCAGTGGGATCCGAGGCATC
TGAAAGGAATCAAAAATGTGCTGGAGCGTCTGTGATAACAAGAATATTCA
ACACAAAATTCAAATTTTTGGGGGTTAAGAAAAGTGAACTCGTGAATTAT
GTGTGCTCCTCAATTTTCGTAATGTAAACCCCCTCTTTATAGTACATACA
TATATATATATATTATGATTATACACGTGTACCCTAACCCCGGACTAATC
CTATATCTTAGACCTTTGTGACCGTAACTCCCATTGAATTTATTTTGATT
GTTTCGATTGATTAGCAGTGTTTCGACTGAATCTTCACGAATATATCTAT
ACCTAGTTTACCGAAAAAAAAAAAAAAAAAA

LD23868.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-RA 2740 CG16721-RA 74..2589 1..2516 12580 100 Plus
CG16721.a 2451 CG16721.a 137..2445 208..2516 11545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5774876..5775741 1648..2513 4300 99.8 Plus
chrX 22417052 chrX 5773184..5773671 208..695 2440 100 Plus
chrX 22417052 chrX 5773734..5774224 694..1184 2440 99.8 Plus
chrX 22417052 chrX 5774284..5774585 1180..1481 1510 100 Plus
chrX 22417052 chrX 5772252..5772459 1..208 1040 100 Plus
chrX 22417052 chrX 5774647..5774813 1482..1648 820 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5882526..5883394 1648..2516 4345 100 Plus
X 23542271 X 5880834..5881321 208..695 2440 100 Plus
X 23542271 X 5881384..5881874 694..1184 2440 99.8 Plus
X 23542271 X 5881934..5882235 1180..1481 1510 100 Plus
X 23542271 X 5879902..5880109 1..208 1040 100 Plus
X 23542271 X 5882297..5882463 1482..1648 835 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5890624..5891492 1648..2516 4345 100 Plus
X 23527363 X 5888932..5889419 208..695 2440 100 Plus
X 23527363 X 5889482..5889972 694..1184 2440 99.7 Plus
X 23527363 X 5890032..5890333 1180..1481 1510 100 Plus
X 23527363 X 5888000..5888207 1..208 1040 100 Plus
X 23527363 X 5890395..5890561 1482..1648 835 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:28:08 has no hits.

LD23868.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:28:44 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5772252..5772458 1..207 100 -> Plus
chrX 5773184..5773671 208..695 100 -> Plus
chrX 5773736..5774220 696..1180 100 -> Plus
chrX 5774285..5774585 1181..1481 100 -> Plus
chrX 5774647..5774813 1482..1648 99 -> Plus
chrX 5774877..5775741 1649..2513 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:10 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 1..1485 427..1911 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:30 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 1..1485 427..1911 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:02:25 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RB 1..1485 427..1911 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:07 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 1..1485 427..1911 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:45 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RB 1..1485 427..1911 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:09 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 45..2557 1..2513 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:30 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 45..2557 1..2513 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:02:25 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 34..2546 1..2513 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:07 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 45..2557 1..2513 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:45 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 34..2546 1..2513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:44 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
X 5879902..5880108 1..207 100 -> Plus
X 5880834..5881321 208..695 100 -> Plus
X 5881386..5881870 696..1180 100 -> Plus
X 5881935..5882235 1181..1481 100 -> Plus
X 5882297..5882463 1482..1648 100 -> Plus
X 5882527..5883391 1649..2513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:44 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
X 5879902..5880108 1..207 100 -> Plus
X 5880834..5881321 208..695 100 -> Plus
X 5881386..5881870 696..1180 100 -> Plus
X 5881935..5882235 1181..1481 100 -> Plus
X 5882297..5882463 1482..1648 100 -> Plus
X 5882527..5883391 1649..2513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:44 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
X 5879902..5880108 1..207 100 -> Plus
X 5880834..5881321 208..695 100 -> Plus
X 5881386..5881870 696..1180 100 -> Plus
X 5881935..5882235 1181..1481 100 -> Plus
X 5882297..5882463 1482..1648 100 -> Plus
X 5882527..5883391 1649..2513 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:02:25 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5773935..5774141 1..207 100 -> Plus
arm_X 5774867..5775354 208..695 100 -> Plus
arm_X 5775419..5775903 696..1180 100 -> Plus
arm_X 5775968..5776268 1181..1481 100 -> Plus
arm_X 5776330..5776496 1482..1648 100 -> Plus
arm_X 5776560..5777424 1649..2513 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:57 Download gff for LD23868.complete
Subject Subject Range Query Range Percent Splice Strand
X 5888000..5888206 1..207 100 -> Plus
X 5888932..5889419 208..695 100 -> Plus
X 5889484..5889968 696..1180 100 -> Plus
X 5890033..5890333 1181..1481 100 -> Plus
X 5890395..5890561 1482..1648 100 -> Plus
X 5890625..5891489 1649..2513 100   Plus

LD23868.pep Sequence

Translation from 426 to 1910

> LD23868.pep
MDAQENRSEQSGQSGDHEEHEERRIRTDSESSVESMTRFVLPSLDGTPPK
IVTLDEVSSMFKNLRNMELAHEIALNPDFKLQKYEPPSDSLEGAIKKMVH
KAFWDLLRVQLDRQPPSYDQAIRLLAEIKECFPQLLSPNNERALAHINEV
LDDSVIRQQAERGTLDFRAYANFVINILSRSCSPARDEAVAALRKIDDVV
DTFRCILELMTLMKLDMANFMLRLARTEIAANSVQYEKEKFSKYLREFHG
NVGFPATEDWLQRHRSGSSDDETIYNAYMQLIDYPADKEFPELLRIDKER
FAGLSWRAQRLILCASLISVAQGMPIISQRRENRIKLAQQLDIIVQDIKN
QDQVASTIESCYEQIRSFVNKALEQENLPALSDADQAALKNQVLKLANKT
SPVPSLMAKRLDGYVRVTLRSNGSIPPPPSGFADYQEELVAFIASFRRLV
SYNHAVFGEHFHQILNKTLPGEETEATTSTASGINPGQAQTAKP*

LD23868.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21216-PA 500 GF21216-PA 1..500 1..494 2173 81 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18796-PA 494 GG18796-PA 1..494 1..494 2472 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24639-PA 486 GH24639-PA 1..464 1..467 1821 72.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-PC 494 CG16721-PC 1..494 1..494 2514 100 Plus
CG16721-PA 494 CG16721-PA 1..494 1..494 2514 100 Plus
CG16721-PB 494 CG16721-PB 1..494 1..494 2514 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21686-PA 490 GI21686-PA 1..490 1..494 1857 70.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19690-PA 570 GL19690-PA 137..570 60..494 1616 69.7 Plus
Dper\GL19693-PA 427 GL19693-PA 1..427 67..494 1597 69.7 Plus
Dper\GL22407-PA 469 GL22407-PA 38..469 60..494 1594 69 Plus
Dper\GL15173-PA 436 GL15173-PA 20..436 26..494 1373 58.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14105-PA 487 GA14105-PA 20..487 26..494 1778 70.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12446-PA 494 GM12446-PA 1..494 1..494 2561 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16762-PA 495 GD16762-PA 1..495 1..494 2556 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15865-PA 515 GJ15865-PA 1..470 1..471 1820 71.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16258-PA 490 GK16258-PA 17..490 22..494 1906 74.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17557-PA 494 GE17557-PA 1..494 1..494 2442 93.9 Plus

LD23868.hyp Sequence

Translation from 426 to 1910

> LD23868.hyp
MDAQENRSEQSGQSGDHEEHEERRIRTDSESSVESMTRFVLPSLDGTPPK
IVTLDEVSSMFKNLRNMELAHEIALNPDFKLQKYEPPSDSLEGAIKKMVH
KAFWDLLRVQLDRQPPSYDQAIRLLAEIKECFPQLLSPNNERALAHINEV
LDDSVIRQQAERGTLDFRAYANFVINILSRSCSPARDEAVAALRKIDDVV
DTFRCILELMTLMKLDMANFMLRLARTEIAANSVQYEKEKFSKYLREFHG
NVGFPATEDWLQRHRSGSSDDETIYNAYMQLIDYPADKEFPELLRIDKER
FAGLSWRAQRLILCASLISVAQGMPIISQRRENRIKLAQQLDIIVQDIKN
QDQVASTIESCYEQIRSFVNKALEQENLPALSDADQAALKNQVLKLANKT
SPVPSLMAKRLDGYVRVTLRSNGSIPPPPSGFADYQEELVAFIASFRRLV
SYNHAVFGEHFHQILNKTLPGEETEATTSTASGINPGQAQTAKP*

LD23868.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-PC 494 CG16721-PC 1..494 1..494 2514 100 Plus
CG16721-PA 494 CG16721-PA 1..494 1..494 2514 100 Plus
CG16721-PB 494 CG16721-PB 1..494 1..494 2514 100 Plus