Clone LD23875 Report

Search the DGRC for LD23875

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:238
Well:75
Vector:pOT2
Associated Gene/TranscriptCG10565-RA
Protein status:LD23875.pep: gold
Preliminary Size:2344
Sequenced Size:2248

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10565 2001-01-01 Release 2 assignment
CG10565 2001-11-29 Blastp of sequenced clone
CG10565 2003-01-01 Sim4 clustering to Release 3
CG10565 2008-04-29 Release 5.5 accounting
CG10565 2008-08-15 Release 5.9 accounting
CG10565 2008-12-18 5.12 accounting

Clone Sequence Records

LD23875.complete Sequence

2248 bp (2248 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069523

> LD23875.complete
ACCACTAGTCGAAAAACATGCGGTGCTGCGGAAAAGTGTGATTATTAATT
GGATTTCGACGTTTTGAAGGCAGCGGATCGCCAAATTTTGAGTAACGTGA
ATCCACAGGAGTGGCGGTGAATGCCCATTAACCAGCGGACCTGACCAGAG
ATGACGAGCGGTACGGTAGCAACGGCGGTGGAGGTGCAGCTGCCGCTCAA
GGTCGTTCGCCGTAAAATCGAGCGCGTTGGCTTCGCTTACTTTGCGCAAC
GGCGCCAATTTCTAGCTCCCGGCGGCGTGGAGCGCAGCGAAAGCGATGAG
AAATTGGAGGGCGTGGGCGAGGAGGTGGACATCAGCTACCTAAAGTCGCT
GGATCCTAAGGAGTGGAAGGACCAGGATCATTACGCCGTTCTTGGCTTGG
GCAAGCTCCGATACGAGGCCAGCGAGGATGATGTTCGACGGGCTTACAGG
CGCATGGTTCTGCTGCACCATCCCGATAAGCGGAAAGCCAAGGGCGAGGA
AGTCATCCAGGACGATGATTACTTCACATGCATAACCAAAGCTTACGAGA
TACTGGGCACATCCAAGCCGCGCCGCAGCTTTGACTCAGTGGATCCCGAG
TTTGACGACTCGCTGCCCTCACAGAACGACATCGATAACGACTACTTTGG
CGTATTTAACAAATTTTTCACACTTAACGGGCGCTGGAGCGAAAAGCCGC
ATGTTCCCTCCTTCGGGCAGGTGGACGCCAAACGCGAAGAGGTGGAGCGC
TTCTACAACTTCTGGTACGATTTTAAGTCATGGCGGGAATTCAGCTACTT
GGACGAAGAGGACAAGGAGAAGGGCCAGGACCGCGACGAACGTCGCTGGA
TCGAAAAGGAGAACAGGGCGGCTCGAATCAAGCGCAAGAAGGAGGAAATG
TCTCGTATCCGGTCGCTCGTCGATTTAGCCTACAACAATGATAAGCGCAT
TCAGCGCTTCAAGCAGGAGGAAAAGGATCGCAAGGCTGCTGCCAAGCGAG
CCAAGATGGACGCCGCCCAGGCCCAGAAGGCAGAAGCTGATCGTGCCATC
CGTGAAGCGGCTTTGGCCAAGGAGAAGGCTGAAAAGGCCGAGCAGAAACG
CATCGAGCAGATCCGCATCGAACGCGAGCAGCAGAAAAAGCTGCTTAAGA
AGGAGCGCAAAACGCTGCGCGACAAGGTCAAGGACTGCAAGTATTATGCC
AAGAACGACAAGGATCAGCTGAAGCACATGGAGGGCACCGAGAAGATTTG
CGAGACCTTCAATCTGGCAGAGCTGCAAGCTCTAAATAAGGCAATGGAAA
GCAAGGGCCGTGAGTCGTTTGTTGCTGCCCTTCAAACGGCCGAGCAGAAG
ATAGCTGCCGAGTTGGAGGAGATTAACCAGACACAGGCCAAGAAGCTTGC
CAGCTCAGCGGCCACGCCAAAAGGCGTTAAGGAGGTCAAGAAGAATGAGC
TCTGGAGCAATGAGAACGTGCAGTTGCTTATCAAGGCGGTTAATCTGTTT
CCCGCTGGCACTGCACAGCGTTGGGATGTCATAGCCACTTTCATTAACCA
GCATAGCCCGGATAACACTGTTCTGGTCAATGCCAGGGATGTGCTCAACA
AAGCCAAGGCGCTCCAGAACACAGATCACTCGAAGAGCTCCCTGAAGACT
CAAGCCAACGATGCGGCATTTGCCAGTTTCGAGAAGTCCAAGAAAGATGT
TCAGACGTGTAAGGATATAACCCTGGGCGAGGAGACGGCCCAGGCGAGCA
AGGAGAACTTGAAACAAAACGGTGTAGATCATAAGGCGAACAATCAGTCA
ACCAAGCAGAATGGCACGGCTCCAGCTCCAGCAAACCCCACGGCTGCACC
AGCCCCAGTTCCGGCCACAAATGGGTCTACGGGCGGCGGTGCTGCCTCCA
AAACCTGGACCAAGGAGGAGCAAGCCCTGCTCGAACAGGCCATTAAAACC
TATCCAACGACGACACCCGATCGCTGGGATTGCATCGCCGCCTGCATACC
GAATCGCAGTAAAAAGGACTGCTTACGTCGCGTCAAAGAGCTGGTCGAGC
TGGTTAACTCCAAGAAGGAGGCACAGGCGGCGGTCAAATGAGTGCGGCTC
CTGCTCCACTTTACCTGCCTCTCGTCCGCCTCATCCACTTCTAGCTGCTG
TGTCCCATATAAATTTTATTTAAATAAAACATAAAAAGTTTTTGAACGTT
TAGCGAAAAGTTAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAA

LD23875.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10565-RA 2562 CG10565-RA 299..2511 1..2213 11050 99.9 Plus
CG10566-RA 1737 CG10566-RA 1674..1737 2213..2150 320 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21122258..21123915 2213..556 8290 100 Minus
chr3L 24539361 chr3L 21124627..21125036 410..1 2035 99.8 Minus
chr3L 24539361 chr3L 21124372..21124519 557..410 740 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21133249..21134906 2213..556 8290 100 Minus
3L 28110227 3L 21135618..21136027 410..1 2035 99.8 Minus
3L 28110227 3L 21135363..21135510 557..410 740 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21126349..21128006 2213..556 8290 100 Minus
3L 28103327 3L 21128718..21129127 410..1 2035 99.7 Minus
3L 28103327 3L 21128463..21128610 557..410 740 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:37:16 has no hits.

LD23875.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:37:59 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21122259..21123914 557..2212 98 <- Minus
chr3L 21124373..21124518 411..556 100 <- Minus
chr3L 21124627..21125036 1..410 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:12 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 1..1941 151..2091 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:05 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 1..1941 151..2091 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:00:00 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 1..1941 151..2091 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:24 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 1..1941 151..2091 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:21 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 1..1941 151..2091 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:15 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 15..2226 1..2212 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:05 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 15..2226 1..2212 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:00:00 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 26..2237 1..2212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:25 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 15..2226 1..2212 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:21 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
CG10565-RA 26..2237 1..2212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:59 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21133250..21134905 557..2212 100 <- Minus
3L 21135364..21135509 411..556 100 <- Minus
3L 21135618..21136027 1..410 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:59 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21133250..21134905 557..2212 100 <- Minus
3L 21135364..21135509 411..556 100 <- Minus
3L 21135618..21136027 1..410 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:59 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21133250..21134905 557..2212 100 <- Minus
3L 21135364..21135509 411..556 100 <- Minus
3L 21135618..21136027 1..410 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:00:00 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21126350..21128005 557..2212 100 <- Minus
arm_3L 21128464..21128609 411..556 100 <- Minus
arm_3L 21128718..21129127 1..410 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:49 Download gff for LD23875.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21126350..21128005 557..2212 100 <- Minus
3L 21128464..21128609 411..556 100 <- Minus
3L 21128718..21129127 1..410 99   Minus

LD23875.pep Sequence

Translation from 150 to 2090

> LD23875.pep
MTSGTVATAVEVQLPLKVVRRKIERVGFAYFAQRRQFLAPGGVERSESDE
KLEGVGEEVDISYLKSLDPKEWKDQDHYAVLGLGKLRYEASEDDVRRAYR
RMVLLHHPDKRKAKGEEVIQDDDYFTCITKAYEILGTSKPRRSFDSVDPE
FDDSLPSQNDIDNDYFGVFNKFFTLNGRWSEKPHVPSFGQVDAKREEVER
FYNFWYDFKSWREFSYLDEEDKEKGQDRDERRWIEKENRAARIKRKKEEM
SRIRSLVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQAQKAEADRAI
REAALAKEKAEKAEQKRIEQIRIEREQQKKLLKKERKTLRDKVKDCKYYA
KNDKDQLKHMEGTEKICETFNLAELQALNKAMESKGRESFVAALQTAEQK
IAAELEEINQTQAKKLASSAATPKGVKEVKKNELWSNENVQLLIKAVNLF
PAGTAQRWDVIATFINQHSPDNTVLVNARDVLNKAKALQNTDHSKSSLKT
QANDAAFASFEKSKKDVQTCKDITLGEETAQASKENLKQNGVDHKANNQS
TKQNGTAPAPANPTAAPAPVPATNGSTGGGAASKTWTKEEQALLEQAIKT
YPTTTPDRWDCIAACIPNRSKKDCLRRVKELVELVNSKKEAQAAVK*

LD23875.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10188-PA 656 GF10188-PA 19..656 13..646 2894 87.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13262-PA 647 GG13262-PA 1..647 1..646 3218 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17000-PA 653 GH17000-PA 1..653 6..646 2630 78.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10565-PB 646 CG10565-PB 1..646 1..646 3321 100 Plus
CG10565-PA 646 CG10565-PA 1..646 1..646 3321 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11414-PA 651 GI11414-PA 1..651 6..646 2664 79 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20759-PA 658 GL20759-PA 1..658 6..646 2731 82.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10399-PA 658 GA10399-PA 1..658 6..646 2733 82.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22166-PA 642 GM22166-PA 1..642 1..646 3289 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12143-PA 648 GD12143-PA 1..648 1..646 3348 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13609-PA 636 GJ13609-PA 12..636 16..646 2696 82.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12316-PA 666 GK12316-PA 1..666 6..646 2674 77.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22360-PA 648 GE22360-PA 1..648 1..646 3319 96.6 Plus
Dyak\GE22720-PA 448 GE22720-PA 1..446 1..446 2321 97.8 Plus

LD23875.hyp Sequence

Translation from 150 to 2090

> LD23875.hyp
MTSGTVATAVEVQLPLKVVRRKIERVGFAYFAQRRQFLAPGGVERSESDE
KLEGVGEEVDISYLKSLDPKEWKDQDHYAVLGLGKLRYEASEDDVRRAYR
RMVLLHHPDKRKAKGEEVIQDDDYFTCITKAYEILGTSKPRRSFDSVDPE
FDDSLPSQNDIDNDYFGVFNKFFTLNGRWSEKPHVPSFGQVDAKREEVER
FYNFWYDFKSWREFSYLDEEDKEKGQDRDERRWIEKENRAARIKRKKEEM
SRIRSLVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQAQKAEADRAI
REAALAKEKAEKAEQKRIEQIRIEREQQKKLLKKERKTLRDKVKDCKYYA
KNDKDQLKHMEGTEKICETFNLAELQALNKAMESKGRESFVAALQTAEQK
IAAELEEINQTQAKKLASSAATPKGVKEVKKNELWSNENVQLLIKAVNLF
PAGTAQRWDVIATFINQHSPDNTVLVNARDVLNKAKALQNTDHSKSSLKT
QANDAAFASFEKSKKDVQTCKDITLGEETAQASKENLKQNGVDHKANNQS
TKQNGTAPAPANPTAAPAPVPATNGSTGGGAASKTWTKEEQALLEQAIKT
YPTTTPDRWDCIAACIPNRSKKDCLRRVKELVELVNSKKEAQAAVK*

LD23875.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10565-PB 646 CG10565-PB 1..646 1..646 3321 100 Plus
CG10565-PA 646 CG10565-PA 1..646 1..646 3321 100 Plus