Clone LD23884 Report

Search the DGRC for LD23884

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:238
Well:84
Vector:pOT2
Associated Gene/TranscriptCG32649-RA
Protein status:LD23884.pep: gold
Preliminary Size:2200
Sequenced Size:2261

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4410 2001-01-01 Release 2 assignment
CG32649 2001-07-04 Blastp of sequenced clone
CG32649 2003-01-01 Sim4 clustering to Release 3
CG32649 2008-04-29 Release 5.5 accounting
CG32649 2008-08-15 Release 5.9 accounting
CG32649 2008-12-18 5.12 accounting

Clone Sequence Records

LD23884.complete Sequence

2261 bp (2261 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051692

> LD23884.complete
CTTTGAACTTTTTTTGCTGTGATATTTTTACGAGATTTACGTAATCCTAC
GCGCCGATCATCACCAGCGAATCACCCACGCGAGAGCAGTGCACAATAAA
CCAGTATTTCCTCGCTCCGCGATGTCGCGATCCGCACAAGAAGCTGCGGC
GCTGCTGCGGGGACTGCGGATCTTGTTGGAGGCGTGTGGGCGCGAGCATC
TCGCCCACGGTCGTCATCTGTGGAGCAATTCAAGCATTCGTGAGCTAATC
GCCGAGAATGTGGCGCACACACAGCAGCTGGTGAGAAGTTCCAGTCAAAA
TCCCACCGAGGAGCTGAAAAAACTGCAGCAAACTGTAAAAGAAACGGGCG
AAAGGGGCTACGTGGTGGCCAAAGGTATTTGCTCGCTGCTGGAGACGAAA
ATCAAGATGTCCCGCGAGGAATCGGCCATCTCTGAGCCTGCACAAGTCTC
CTCAATTCGTAAATCCACACCCACGGCACAAAATCCAGCAAGTTGGGACG
CCGCCAACTTGGATATATCATCCATAACGCTGCAGGAGTTCGAGGAGATA
CTCTCGCGCCGGAACAAAGATCGTAGTGTTAGCTTGCGCACCCCGGCAAC
CAAAAGCAACCAGACCATGCCCAAAAAAGAAACGTCAACCAATCCGGGCA
TCATTACCCAGGACACGGAGTATGTAAACAATGTGCTGCGGTTTGTGGCG
GGCGCCAAGGTGGAGGAGCAGCCACCAGATGCGCAGCCGAAGAAGAAGTC
CGACCAGCCGGCCATTGAAGTGCCCGAACTGAGCAAGGTGGCCAAACAGC
GCAAGGTTCCCTCCTCCCGGATAGGCAGAATGGCCTCCTTTGGCGGCCTG
TTCGCCGGCCTGGGCCTGGGAACCCTCAACGAGCTGACCAAGGGTGCACT
CGGCCTGGGCGGTTCGACCAGCATGCGAGAGGCGTTGCTCAGTCCCGCCA
ATGCTGAACGCATCGTGGACACGCTATGCAAGGTGAGAGGAGCTGCCCTG
AAGATCGGACAAATCCTGAGCATACAAGATTCCAGCGTTGTGTCGCCGCA
ACTGGCCAAGGCGTTTGAGCGGGTGCGTCAGGCGGCGGACTATATGCCCG
ATTGGCAGGTCGAACGCGTGATGAACACCCAATTGGGTGCCGATTGGCGA
CAGCGTCTCAAGAGTTTCGAGGACAAACCCTTTGCGGCTGCCTCCATTGG
CCAGGTGCATCGGGCAACGCTGAGCGATGGCATGGATGTGGCCATTAAGA
TCCAATATCCCGGTGTCGCCCAGAGCATCGAGAGCGACATTGACAATTTG
GTGGGCATGCTGAAGGTGTGGGATGTCTTTCCACAGGGTTTCTTCATCGA
CAATGTGGTGCGCGTGGCCAAACGTGAGTTGCAATGGGAGGTGGACTATG
ATCGCGAGGCGGAATACACGGAGAAGTTTCGCGAAATGATCGCGCCCTAT
CCCGAGTACTATGTACCGCGTGTGGTGCGCGATCTGACCACGTCCAGCGT
TCTGACCACCGAACTGGTGCCCGGTGTGCCGCTCGATAAGTGTTTCGATC
TGAGCTACGAGCATCGCCGCCACATAGCCGCATCCGTGCTGAAGCTCTGC
CTGCGCGAGCTCTTCGAGATTGAGTGCATGCAGACGGATCCGAATTGGTC
CAACTTTCTGTACGATGCGCCCAGTCGCCGGCTAATGCTGATCGACTTCG
GTTCGACGCGCTTCTATAGGCATGAATTCATCCGCAACTATCGCCGGGTG
ATCATGAGCGCCGCCGAGAACAATCGTCAGGGCGTTTTGGAGATGTCGCG
CGAAATGGGCTTCCTAACCGGCTACGAGACGAAGCAAATGGAGCAGGCGC
ACGTGGATGCGGTGATGATATTGGGCGAGATCTTTCGCTACGACGGTGAT
TTCGATTTCGGTCGACAGAATACCACCGAAAGATTGGCCGCCCTGGTGCC
CACAATGGTGGCGCATCGATTGTGCCCGCCGCCCGAGGAGATATACTCCA
TTCATCGCAAGCTATCGGGCATTTTCCTGCTGTGCGCGCGTCTGAATGTG
CGCATGAATTGCGTGCCCTTCTACAAGGACATCGTTCTGGGGAAGTTCAA
GGACTAGTGAGCACAGCTCACCCCTCTTCCCTTGACCATTTTCTTTTTTT
TTTTTTTGTCCAATCCAATCCCAGTTGTAAACCATAAGTGCGCTTAATTT
GTAAATGCGATTCGCTGCAAGATTACATATGTTAATTTCCCAAAAAAAAA
AAAAAAAAAAA

LD23884.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32649-RA 2441 CG32649-RA 59..2302 1..2243 11180 99.9 Plus
CG32649.a 1890 CG32649.a 1..983 1..983 4915 100 Plus
CG32649.a 1890 CG32649.a 981..1890 1335..2243 4510 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12790437..12791990 1554..1 7710 99.7 Minus
chrX 22417052 chrX 12789682..12790371 2241..1553 3265 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12899523..12901076 1554..1 7770 100 Minus
X 23542271 X 12898766..12899457 2243..1553 3410 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12907621..12909174 1554..1 7770 100 Minus
X 23527363 X 12906864..12907555 2243..1553 3420 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 21:50:18 has no hits.

LD23884.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:51:00 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12789682..12790369 1555..2241 98 <- Minus
chrX 12790437..12791990 1..1554 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:16 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 1..1986 122..2107 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:08 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 1..1986 122..2107 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:06:29 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 1..1986 122..2107 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:47 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 1..1986 122..2107 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:43 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 1..1986 122..2107 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:20 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 1..2242 1..2241 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:08 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 1..2242 1..2241 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:29 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 39..2280 1..2241 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:48 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 1..2242 1..2241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:43 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
CG32649-RA 39..2280 1..2241 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:00 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
X 12898768..12899455 1555..2241 99 <- Minus
X 12899523..12901076 1..1554 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:00 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
X 12898768..12899455 1555..2241 99 <- Minus
X 12899523..12901076 1..1554 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:00 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
X 12898768..12899455 1555..2241 99 <- Minus
X 12899523..12901076 1..1554 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:29 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12792801..12793488 1555..2241 99 <- Minus
arm_X 12793556..12795109 1..1554 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:29 Download gff for LD23884.complete
Subject Subject Range Query Range Percent Splice Strand
X 12906866..12907553 1555..2241 99 <- Minus
X 12907621..12909174 1..1554 100   Minus

LD23884.pep Sequence

Translation from 121 to 2106

> LD23884.pep
MSRSAQEAAALLRGLRILLEACGREHLAHGRHLWSNSSIRELIAENVAHT
QQLVRSSSQNPTEELKKLQQTVKETGERGYVVAKGICSLLETKIKMSREE
SAISEPAQVSSIRKSTPTAQNPASWDAANLDISSITLQEFEEILSRRNKD
RSVSLRTPATKSNQTMPKKETSTNPGIITQDTEYVNNVLRFVAGAKVEEQ
PPDAQPKKKSDQPAIEVPELSKVAKQRKVPSSRIGRMASFGGLFAGLGLG
TLNELTKGALGLGGSTSMREALLSPANAERIVDTLCKVRGAALKIGQILS
IQDSSVVSPQLAKAFERVRQAADYMPDWQVERVMNTQLGADWRQRLKSFE
DKPFAAASIGQVHRATLSDGMDVAIKIQYPGVAQSIESDIDNLVGMLKVW
DVFPQGFFIDNVVRVAKRELQWEVDYDREAEYTEKFREMIAPYPEYYVPR
VVRDLTTSSVLTTELVPGVPLDKCFDLSYEHRRHIAASVLKLCLRELFEI
ECMQTDPNWSNFLYDAPSRRLMLIDFGSTRFYRHEFIRNYRRVIMSAAEN
NRQGVLEMSREMGFLTGYETKQMEQAHVDAVMILGEIFRYDGDFDFGRQN
TTERLAALVPTMVAHRLCPPPEEIYSIHRKLSGIFLLCARLNVRMNCVPF
YKDIVLGKFKD*

LD23884.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20885-PA 681 GF20885-PA 1..681 1..661 2934 80.1 Plus
Dana\GF12996-PA 518 GF12996-PA 80..369 278..563 206 24.4 Plus
Dana\GF25249-PA 558 GF25249-PA 105..295 277..468 155 24 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19534-PA 661 GG19534-PA 1..661 1..661 3350 93.9 Plus
Dere\GG22994-PA 518 GG22994-PA 80..370 278..564 200 24.3 Plus
Dere\GG15486-PA 557 GG15486-PA 99..341 272..513 164 23.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17620-PA 692 GH17620-PA 1..692 1..661 2678 75 Plus
Dgri\GH20324-PA 441 GH20324-PA 79..369 278..564 239 26.7 Plus
Dgri\GH14836-PA 515 GH14836-PA 60..319 273..527 167 23.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Coq8-PA 661 CG32649-PA 1..661 1..661 3378 100 Plus
Adck-PB 518 CG3608-PB 80..369 278..563 208 24.7 Plus
Adck-PA 518 CG3608-PA 80..369 278..563 208 24.7 Plus
CG7616-PB 557 CG7616-PB 99..339 272..511 168 21.8 Plus
CG7616-PA 557 CG7616-PA 99..339 272..511 168 21.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16276-PA 692 GI16276-PA 1..692 1..661 2657 74.6 Plus
Dmoj\GI19996-PA 515 GI19996-PA 79..368 278..563 220 24.8 Plus
Dmoj\GI13688-PA 559 GI13688-PA 65..363 239..527 168 21 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22961-PA 661 GL22961-PA 1..661 1..661 2861 80.1 Plus
Dper\GL10232-PA 517 GL10232-PA 80..370 278..564 210 24.7 Plus
Dper\GL22769-PA 559 GL22769-PA 19..298 220..471 161 23.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17042-PA 661 GA17042-PA 1..661 1..661 2859 80 Plus
Dpse\GA17555-PA 517 GA17555-PA 80..369 278..563 204 24.4 Plus
Dpse\GA20483-PA 559 GA20483-PA 19..298 220..471 165 24.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11527-PA 661 GM11527-PA 1..661 1..661 3360 96.5 Plus
Dsec\GM11887-PA 518 GM11887-PA 80..370 278..564 195 24.3 Plus
Dsec\GM25258-PA 557 GM25258-PA 99..341 272..513 166 22.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15912-PA 159 GD15912-PA 1..159 503..661 867 97.5 Plus
Dsim\GD11885-PA 518 GD11885-PA 80..370 278..564 201 24.7 Plus
Dsim\GD14292-PA 557 GD14292-PA 99..341 272..513 169 22.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16920-PA 681 GJ16920-PA 1..681 1..661 2738 75.7 Plus
Dvir\GJ21245-PA 515 GJ21245-PA 79..368 278..563 225 26.4 Plus
Dvir\GJ14030-PA 554 GJ14030-PA 39..398 240..558 160 21.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10272-PA 695 GK10272-PA 1..695 1..661 2690 75.6 Plus
Dwil\GK21422-PA 518 GK21422-PA 81..371 278..564 219 26.2 Plus
Dwil\GK20341-PA 468 GK20341-PA 17..214 273..471 161 22.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16192-PA 661 GE16192-PA 1..661 1..661 3371 94.4 Plus
Dyak\GE14431-PA 520 GE14431-PA 80..370 278..564 201 24.7 Plus
Dyak\GE21796-PA 557 GE21796-PA 99..341 272..513 169 22.7 Plus

LD23884.hyp Sequence

Translation from 121 to 2106

> LD23884.hyp
MSRSAQEAAALLRGLRILLEACGREHLAHGRHLWSNSSIRELIAENVAHT
QQLVRSSSQNPTEELKKLQQTVKETGERGYVVAKGICSLLETKIKMSREE
SAISEPAQVSSIRKSTPTAQNPASWDAANLDISSITLQEFEEILSRRNKD
RSVSLRTPATKSNQTMPKKETSTNPGIITQDTEYVNNVLRFVAGAKVEEQ
PPDAQPKKKSDQPAIEVPELSKVAKQRKVPSSRIGRMASFGGLFAGLGLG
TLNELTKGALGLGGSTSMREALLSPANAERIVDTLCKVRGAALKIGQILS
IQDSSVVSPQLAKAFERVRQAADYMPDWQVERVMNTQLGADWRQRLKSFE
DKPFAAASIGQVHRATLSDGMDVAIKIQYPGVAQSIESDIDNLVGMLKVW
DVFPQGFFIDNVVRVAKRELQWEVDYDREAEYTEKFREMIAPYPEYYVPR
VVRDLTTSSVLTTELVPGVPLDKCFDLSYEHRRHIAASVLKLCLRELFEI
ECMQTDPNWSNFLYDAPSRRLMLIDFGSTRFYRHEFIRNYRRVIMSAAEN
NRQGVLEMSREMGFLTGYETKQMEQAHVDAVMILGEIFRYDGDFDFGRQN
TTERLAALVPTMVAHRLCPPPEEIYSIHRKLSGIFLLCARLNVRMNCVPF
YKDIVLGKFKD*

LD23884.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32649-PA 661 CG32649-PA 1..661 1..661 3378 100 Plus
CG3608-PB 518 CG3608-PB 80..369 278..563 208 24.7 Plus
CG3608-PA 518 CG3608-PA 80..369 278..563 208 24.7 Plus
CG7616-PB 557 CG7616-PB 99..339 272..511 168 21.8 Plus
CG7616-PA 557 CG7616-PA 99..339 272..511 168 21.8 Plus