Clone LD23909 Report

Search the DGRC for LD23909

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:239
Well:9
Vector:pOT2
Associated Gene/TranscriptMgat1-RA
Protein status:LD23909.pep: gold
Sequenced Size:2801

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13431 2007-09-25 DGC5 pick
Mgat1 2008-04-29 Picked prior to 5.5
Mgat1 2008-08-15 Release 5.9 accounting
Mgat1 2008-12-18 5.12 accounting

Clone Sequence Records

LD23909.complete Sequence

2801 bp assembled on 2008-05-16

GenBank Submission: BT032838

> LD23909.complete
TTTACATTTTGAATTTATACAAATTACGACCAAACACGTAACCACTGGTT
GTCAGCGGACGCTGGACGAGGCAGCGCGGCAATCGAACTCGTCACTCCAA
CCGGCGAACAAGTCAATCGAGCTTCCAGTGCAGCCGCCGAACGTGTAAAA
CATTCACAATTCGATTTGCACACACAGATTCGATCCGAATCCAAATCCCG
AATCCCCGAGAATCGGCGAAATCTGCCAGCTTGGCGACCGCTGGTGTGTG
ACGTGTGACCGGCGACAGCTAGTCATACATATTCAGTAGATGCCGAGGCA
TCCGGCTGGGCCCGTGCCCGATGCTGGACACGCTTGTTGGACACGGCTGC
TCGACACGGGTGCTCGGCTGTAGAAGAAGGGCCGGCCGAGGTCTTCCAAT
CCCACCGAATCCGTATCCAAAACCGATCGCCAATGCCGCTGCATCGCTAG
CGACGCACTGCAGCAGACGTCCACCAGTTCCATCAGCACCCCCACCCACC
AATTTCCCCCCAAAAAGATGCGAACGCGCAAGGTGCTATTGGTAATTGGC
TTTCTGGTTACGTGGACCTATGCCACCTACTACCTGCTGTTGCGCCAAAC
GGGCATCCATACGAGCCGGCATCAGTCGCTTCAGGCCTACAAGCTCAACT
CGCAGGCTCGCGATGCCAATATGCAAAGCCATCATCTGGCCAAGAACGTG
TTTGAGTTCGTCAAGCTGAAGTACTTGGAGAAGCAACCACCGTCGGTGGC
ATCCACGCCGCAAATTAGCATAATTGCCGCCGAAATATCGGCGGAGCTGC
CGGAGCAGCATGTGGCCAAGTCGGCAACGGCGCGCATTCCAACGAAAACA
TATCTGGCCAATGGCGAGCCCGTGTTTCCAGTCGTAGTCTTCGCCTGCAA
TCGGGTGTCGGTGAAGAAGTGCATCGATAACTTGGTTCAGTACAGGCCCA
GCGTGGAGCAGTTCCCCATTATTGTGTCACAGGACTGCGGCGATGAGCCC
ACCAAGGAGGCAATCCTCTCGTATGGCAAACAGGTCACGCTCATCGAGCA
GCCTGATCTCAGCGACATCACAGTGCTGCCGAAGGAGAAAAAATTCAAAG
GCTACTACAAGATAGCCCGACACTACGGCTGGGCCCTGAACACCACCTTC
GCTGTGGGCTTTGAGTTCGTCATAATCGTCGAGGACGATCTGAACGTGGC
GCCCGACTTCTTTGAGTACTTCCTGGGCACGCACAAGCTGCTCAAGCAGG
ACCCCAGCCTGTGGTGCGTGTCCGCGTGGAATGACAATGGCAAGGCTGCT
GTTGTGGACGCCGCGCAGCCGGAGCTGCTCTACCGCACCGATTTCTTTCC
CGGTCTCGGCTGGATGCTCACCAAAGATCTGTGGGCCGAGCTGTCGGTCA
AATGGCCCAAATCCTTCTGGGATGATTGGATACGTCATCCCGCCCAGCGC
AAAGATCGCGTGTGCATTAGGCCCGAAATATCACGCACTCGCACGTTTGG
AAAAATAGGCGTTTCCAACGGTTTGTTCTTCGATAAGTATCTGAAGCACA
TTAAACTGAGCGAGGACTTTGTGCAGTTTACAAAAATCAATATGAGCTAC
CTGCTGAAGGACAATTACGATAACACGTTTCTGCGGCGCGTTTATACGTA
TCCCATTGTTACGTACGATGAGCTGCGGCGAAACCTGATTAGAATCGAAG
GTCCAGTTCGCATTCAATACACTACTAGGGAGCAGTACAAGCGGACAACT
AAGATGCTGGGTCTTATGGATGATTTCAAGAGCGGTGTTCCGCGGACTGC
CTACCATGGCATCGTCTCCTTCTACTACAACAAACGGCGCGTGCATCTGG
CACCCAACGCCAACTGGAAGGGCTACGAGCTCTCTTGGAGCTAACGACGC
TAAGGACAGAGTACCGCCAGCTCCACTTCCATTACCACGCAGCTAGCTCC
GCGTGCTTGCAATACCAAAAATAGCCCTATGAGTTTTAATTTTTATTTGA
CCAATTAGCTAAGTTGTAACTATGGAATCTCCTCGAACAGTAGACGCTGT
TCGCAGCCATCGCGTAGGCAGGAGTACTTGGAGTACTAGCCCTGATTTCT
GATAGAAAACGCAATTCGTCTGCTCCAGATCCCTAGCCTACGGACCTACT
GTTGGCGTAACAAAATCAAATCAAATGAGTCTCCACTATGTATAGTAGTC
AACCGAACCGAACTGTGTGTGGCAAGAGCCAAAAGTGTTCCATTCTAGCA
CACCAGCCACACAAGCAACGCAATGAATTGTAAATAAGTCAGTGTCGTTC
GCTTTTGTTACAGCTCTCTCTATCTGTCTATCTCTCTCAATTTATCGTGT
TAAATTGCAAATAGTTATAGCAATGGTTAAGTTATAGTATGCAGCGTGTA
ATTTGTAGCATTTAAGTTGATCCAACTAGAGTTCTAACGGCAACGGACGT
GTAATATTTGTGATTTTTGATTATTTAATTTACATTTATTAATTGTTGAG
AGCCAGTCAGTAAACAGTACCCGACCCACACAATGTAACATAGAATAGCA
ATAACTAGCGCTAGTACTAGTACTAGAACCACAACGTAAACTAGACCAGT
GCTGAGCCACCAGGGGTACGCCAGTAATCCCGGCCAGATCTGAAAGTGTG
CCACTCTCAGCTAGTTGTAATGGAATCAACCCAGACAGGACACCTACTCT
ACTACCCCCTATGACTACACTTTGTATGAGCATATTTTTGTGTGTATGAG
AGACGTACGGAACATAAATTCTAAAGACAAAAAAAAAAAAAAAAAAAAAA
A

LD23909.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mgat1-RA 2989 Mgat1-RA 138..2917 1..2780 13900 100 Plus
CG13424-RA 2048 CG13424-RA 1249..2048 2780..1981 4000 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16445926..16446925 2778..1779 4970 99.8 Minus
chr2R 21145070 chr2R 16448073..16449055 983..1 4795 99.2 Minus
chr2R 21145070 chr2R 16447584..16448019 1413..978 2090 98.6 Minus
chr2R 21145070 chr2R 16447419..16447523 1518..1414 510 99 Minus
chr2R 21145070 chr2R 16447262..16447353 1610..1519 460 100 Minus
chr2R 21145070 chr2R 16446977..16447066 1780..1691 450 100 Minus
chr2R 21145070 chr2R 16447123..16447207 1692..1608 425 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20559154..20560155 2780..1779 5010 100 Minus
2R 25286936 2R 20561305..20562287 983..1 4915 100 Minus
2R 25286936 2R 20560814..20561248 1413..979 2175 100 Minus
2R 25286936 2R 20560649..20560753 1518..1414 525 100 Minus
2R 25286936 2R 20560492..20560583 1610..1519 460 100 Minus
2R 25286936 2R 20560207..20560296 1780..1691 450 100 Minus
2R 25286936 2R 20560353..20560437 1692..1608 425 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20560353..20561354 2780..1779 5010 100 Minus
2R 25260384 2R 20562504..20563486 983..1 4915 100 Minus
2R 25260384 2R 20562013..20562447 1413..979 2175 100 Minus
2R 25260384 2R 20561848..20561952 1518..1414 525 100 Minus
2R 25260384 2R 20561691..20561782 1610..1519 460 100 Minus
2R 25260384 2R 20561406..20561495 1780..1691 450 100 Minus
2R 25260384 2R 20561552..20561636 1692..1608 425 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:00:24 has no hits.

LD23909.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:01:05 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16445926..16446923 1781..2778 99 <- Minus
chr2R 16446977..16447064 1693..1780 100 <- Minus
chr2R 16447123..16447205 1610..1692 100 <- Minus
chr2R 16447263..16447353 1519..1609 100 <- Minus
chr2R 16447419..16447523 1414..1518 99 <- Minus
chr2R 16447584..16448014 983..1413 98 <- Minus
chr2R 16448074..16449055 1..982 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:20 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 1..1377 518..1894 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:59:59 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 1..1377 518..1894 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:47:26 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 1..1377 518..1894 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:30 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 1..1377 518..1894 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:54:38 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 1..1377 518..1894 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:08 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 41..2818 1..2778 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:59:59 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 41..2818 1..2778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:47:26 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 45..2822 1..2778 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:30 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 41..2818 1..2778 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:54:38 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat1-RA 45..2822 1..2778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:01:05 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20561306..20562287 1..982 100   Minus
2R 20559156..20560153 1781..2778 100 <- Minus
2R 20560207..20560294 1693..1780 100 <- Minus
2R 20560353..20560435 1610..1692 100 <- Minus
2R 20560493..20560583 1519..1609 100 <- Minus
2R 20560649..20560753 1414..1518 100 <- Minus
2R 20560814..20561244 983..1413 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:01:05 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20561306..20562287 1..982 100   Minus
2R 20559156..20560153 1781..2778 100 <- Minus
2R 20560207..20560294 1693..1780 100 <- Minus
2R 20560353..20560435 1610..1692 100 <- Minus
2R 20560493..20560583 1519..1609 100 <- Minus
2R 20560649..20560753 1414..1518 100 <- Minus
2R 20560814..20561244 983..1413 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:01:05 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20561306..20562287 1..982 100   Minus
2R 20559156..20560153 1781..2778 100 <- Minus
2R 20560207..20560294 1693..1780 100 <- Minus
2R 20560353..20560435 1610..1692 100 <- Minus
2R 20560493..20560583 1519..1609 100 <- Minus
2R 20560649..20560753 1414..1518 100 <- Minus
2R 20560814..20561244 983..1413 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:47:26 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16448154..16448258 1414..1518 100 <- Minus
arm_2R 16446661..16447658 1781..2778 100 <- Minus
arm_2R 16447712..16447799 1693..1780 100 <- Minus
arm_2R 16447858..16447940 1610..1692 100 <- Minus
arm_2R 16447998..16448088 1519..1609 100 <- Minus
arm_2R 16448319..16448749 983..1413 100 <- Minus
arm_2R 16448811..16449792 1..982 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:32 Download gff for LD23909.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20560355..20561352 1781..2778 100 <- Minus
2R 20561406..20561493 1693..1780 100 <- Minus
2R 20561552..20561634 1610..1692 100 <- Minus
2R 20561692..20561782 1519..1609 100 <- Minus
2R 20561848..20561952 1414..1518 100 <- Minus
2R 20562013..20562443 983..1413 100 <- Minus
2R 20562505..20563486 1..982 100   Minus

LD23909.pep Sequence

Translation from 517 to 1893

> LD23909.pep
MRTRKVLLVIGFLVTWTYATYYLLLRQTGIHTSRHQSLQAYKLNSQARDA
NMQSHHLAKNVFEFVKLKYLEKQPPSVASTPQISIIAAEISAELPEQHVA
KSATARIPTKTYLANGEPVFPVVVFACNRVSVKKCIDNLVQYRPSVEQFP
IIVSQDCGDEPTKEAILSYGKQVTLIEQPDLSDITVLPKEKKFKGYYKIA
RHYGWALNTTFAVGFEFVIIVEDDLNVAPDFFEYFLGTHKLLKQDPSLWC
VSAWNDNGKAAVVDAAQPELLYRTDFFPGLGWMLTKDLWAELSVKWPKSF
WDDWIRHPAQRKDRVCIRPEISRTRTFGKIGVSNGLFFDKYLKHIKLSED
FVQFTKINMSYLLKDNYDNTFLRRVYTYPIVTYDELRRNLIRIEGPVRIQ
YTTREQYKRTTKMLGLMDDFKSGVPRTAYHGIVSFYYNKRRVHLAPNANW
KGYELSWS*

LD23909.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12760-PA 456 GF12760-PA 1..456 1..458 2208 88.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20851-PA 458 GG20851-PA 1..458 1..458 2416 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22116-PA 467 GH22116-PA 1..467 1..458 1921 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
Mgat1-PA 458 CG13431-PA 1..458 1..458 2432 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19251-PA 460 GI19251-PA 1..460 1..458 1874 75.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10391-PA 455 GL10391-PA 1..455 1..458 2097 83.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12283-PA 455 GA12283-PA 1..455 1..458 2100 83.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19778-PA 458 GM19778-PA 1..458 1..458 2456 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25269-PA 458 GD25269-PA 1..458 1..458 2456 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20329-PA 463 GJ20329-PA 1..463 1..458 1936 76.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21834-PA 466 GK21834-PA 1..466 1..458 2041 80.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13790-PA 458 GE13790-PA 1..458 1..458 2409 97.2 Plus

LD23909.hyp Sequence

Translation from 517 to 1893

> LD23909.hyp
MRTRKVLLVIGFLVTWTYATYYLLLRQTGIHTSRHQSLQAYKLNSQARDA
NMQSHHLAKNVFEFVKLKYLEKQPPSVASTPQISIIAAEISAELPEQHVA
KSATARIPTKTYLANGEPVFPVVVFACNRVSVKKCIDNLVQYRPSVEQFP
IIVSQDCGDEPTKEAILSYGKQVTLIEQPDLSDITVLPKEKKFKGYYKIA
RHYGWALNTTFAVGFEFVIIVEDDLNVAPDFFEYFLGTHKLLKQDPSLWC
VSAWNDNGKAAVVDAAQPELLYRTDFFPGLGWMLTKDLWAELSVKWPKSF
WDDWIRHPAQRKDRVCIRPEISRTRTFGKIGVSNGLFFDKYLKHIKLSED
FVQFTKINMSYLLKDNYDNTFLRRVYTYPIVTYDELRRNLIRIEGPVRIQ
YTTREQYKRTTKMLGLMDDFKSGVPRTAYHGIVSFYYNKRRVHLAPNANW
KGYELSWS*

LD23909.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mgat1-PA 458 CG13431-PA 1..458 1..458 2432 100 Plus