BDGP Sequence Production Resources |
Search the DGRC for LD23953
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 239 |
Well: | 53 |
Vector: | pOT2 |
Associated Gene/Transcript | Sce-RA |
Protein status: | LD23953.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1534 |
Gene | Date | Evidence |
---|---|---|
CG5595 | 2001-01-01 | Release 2 assignment |
CG5595 | 2001-09-19 | Blastp of sequenced clone |
CG5595 | 2003-01-01 | Sim4 clustering to Release 3 |
Sce | 2008-04-29 | Release 5.5 accounting |
Sce | 2008-08-15 | Release 5.9 accounting |
Sce | 2008-12-18 | 5.12 accounting |
1534 bp (1534 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058535
> LD23953.complete CACACTTCAAGCTAATTTGGAAAATCTTAGCGAAAATTTCGTAAAAAGTG GTGTTTGTGTATTGAAAAGCCTCAGAATTGGTGTGAAAATGACGTCGCTG GACCCGGCGCCAAACAAAACGTGGGAGCTGTCGCTGTACGAGCTGCAGCG CAAGCCGCAGGAGGTGATCACGGACAGCACGGAAATCGCGGTGTCCCCGC GGAGCCTCCACAGCGAACTGATGTGTCCCATCTGCCTGGACATGCTGAAG AAGACGATGACGACGAAGGAGTGCCTGCACCGCTTCTGCTCCGACTGCAT TGTGACCGCCCTGCGTTCGGGCAATAAGGAGTGCCCCACGTGCCGCAAGA AGCTCGTCTCCAAGCGCTCCCTGCGCGCCGATCCCAACTTCGACCTGCTC ATCTCGAAGATCTACCCCAGTCGCGAGGAATACGAGGCCATCCAGGAGAA GGTGATGGCTAAGTTCAACCAGACGCAGTCGCAGCAGGCGCTGGTCAACT CCATCAACGAGGGCATCAAGCTGCAGTCCCAGAACCGGCCACAAAGATTC CGCACCAAGGGCGGCGGCGGTGGTGGTGGTGGAGGTGGTAATGGAAATGG TGCTGCCAATGTCGCAGCTCCGCCTGCACCTGGTGCACCCACTGCTGTGG GTCGCAATGCCTCCAACCAAATGCACGTCCACGACACAGCCTCCAATGAT AGCAACAGCAATACCAACAGCATTGATCGCGAGAACCGGGATCCGGGTCA TTCGGGCACATCGGCAGCATCGGCCATAACGAGCGCCTCGAATGCTGCGC CCTCGTCGTCGGCAAACTCGGGCGCCAGCACATCCGCCACTCGGATGCAG GTGGACGACGCTTCCAATCCCCCCTCGGTGCGGAGCACTCCGTCACCAGT GCCCTCCAACTCGAGCAGCTCCAAGCCGAAGCGCGCCATGTCGGTGCTGA CTTCGGAGCGGTCCGAGGAGTCCGAGTCGGATTCACAGATGGACTGCCGC ACCGAGGGTGACTCCAACATCGACACAGAGGGCGAGGGCAATGGCGAGCT GGGCATCAACGATGAAATCGAGCTCGTCTTCAAGCCCCATCCCACGGAGA TGTCGGCGGACAACCAGCTCATACGGGCACTCAAGGAGAACTGTGTGCGC TACATCAAGACCACGGCAAATGCCACCGTCGATCATCTCAGCAAGTATCT GGCCATGCGGCTCACGCTCGACCTGGGCGCCGATTTGCCAGAGGCTTGTC GCGTGCTCAACTTTTGCATCTACGTCGCTCCACAGCCACAGCAGTTGGTT ATCCTGAATGGCAACCAGACGTTGCACCAGGTCAACGACAAATTCTGGAA GGTAAACAAACCTATGGAAATGTATTACTCGTGGAAGAAAACCTAAGCTG TACGAAGCGTTTTAGTATTAGGCCGTTTATTTCTGAAATGGAAATATGTC TAGCTGTAGAGCTTAACACACGTATATAAAGCATTCATGTACCACAAAAT ATATTTAATTGTAAGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sce-RA | 1804 | Sce-RA | 27..1546 | 1..1520 | 7600 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2868..2982 | 624..736 | 119 | 60.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 23503357..23503521 | 1352..1516 | 99 | <- | Minus |
chr3R | 23503579..23504929 | 1..1351 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 1..1308 | 89..1396 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 1..1308 | 89..1396 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 1..1308 | 89..1396 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 1..1308 | 89..1396 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 1..1308 | 89..1396 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 22..1537 | 1..1516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 22..1537 | 1..1516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 27..1542 | 1..1516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 22..1537 | 1..1516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sce-RA | 27..1542 | 1..1516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27680653..27682003 | 1..1351 | 100 | Minus | |
3R | 27680431..27680595 | 1352..1516 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27680653..27682003 | 1..1351 | 100 | Minus | |
3R | 27680431..27680595 | 1352..1516 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27680653..27682003 | 1..1351 | 100 | Minus | |
3R | 27680431..27680595 | 1352..1516 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 23506153..23506317 | 1352..1516 | 100 | <- | Minus |
arm_3R | 23506375..23507725 | 1..1351 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27421262..27421426 | 1352..1516 | 100 | <- | Minus |
3R | 27421484..27422834 | 1..1351 | 100 | Minus |
Translation from 0 to 1395
> LD23953.hyp TLQANLENLSENFVKSGVCVLKSLRIGVKMTSLDPAPNKTWELSLYELQR KPQEVITDSTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCI VTALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSREEYEAIQEK VMAKFNQTQSQQALVNSINEGIKLQSQNRPQRFRTKGGGGGGGGGGNGNG AANVAAPPAPGAPTAVGRNASNQMHVHDTASNDSNSNTNSIDRENRDPGH SGTSAASAITSASNAAPSSSANSGASTSATRMQVDDASNPPSVRSTPSPV PSNSSSSKPKRAMSVLTSERSEESESDSQMDCRTEGDSNIDTEGEGNGEL GINDEIELVFKPHPTEMSADNQLIRALKENCVRYIKTTANATVDHLSKYL AMRLTLDLGADLPEACRVLNFCIYVAPQPQQLVILNGNQTLHQVNDKFWK VNKPMEMYYSWKKT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sce-PA | 435 | CG5595-PA | 1..435 | 30..464 | 2263 | 100 | Plus |
Translation from 88 to 1395
> LD23953.pep MTSLDPAPNKTWELSLYELQRKPQEVITDSTEIAVSPRSLHSELMCPICL DMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADPN FDLLISKIYPSREEYEAIQEKVMAKFNQTQSQQALVNSINEGIKLQSQNR PQRFRTKGGGGGGGGGGNGNGAANVAAPPAPGAPTAVGRNASNQMHVHDT ASNDSNSNTNSIDRENRDPGHSGTSAASAITSASNAAPSSSANSGASTSA TRMQVDDASNPPSVRSTPSPVPSNSSSSKPKRAMSVLTSERSEESESDSQ MDCRTEGDSNIDTEGEGNGELGINDEIELVFKPHPTEMSADNQLIRALKE NCVRYIKTTANATVDHLSKYLAMRLTLDLGADLPEACRVLNFCIYVAPQP QQLVILNGNQTLHQVNDKFWKVNKPMEMYYSWKKT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18697-PA | 432 | GF18697-PA | 1..432 | 1..435 | 1784 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12099-PA | 435 | GG12099-PA | 1..435 | 1..435 | 2325 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17005-PA | 437 | GH17005-PA | 1..437 | 1..435 | 1680 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sce-PA | 435 | CG5595-PA | 1..435 | 1..435 | 2263 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10743-PA | 440 | GI10743-PA | 1..440 | 1..435 | 1670 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13768-PA | 439 | GL13768-PA | 1..439 | 1..435 | 1845 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18995-PA | 439 | GA18995-PA | 1..439 | 1..435 | 1845 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16329-PA | 434 | GM16329-PA | 1..434 | 1..435 | 2318 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18065-PA | 436 | GD18065-PA | 1..436 | 1..435 | 2316 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10686-PA | 443 | GJ10686-PA | 1..443 | 1..435 | 1715 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11322-PA | 421 | GK11322-PA | 1..421 | 1..435 | 1804 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10548-PA | 439 | GE10548-PA | 1..439 | 1..435 | 2317 | 98.4 | Plus |