Clone LD23953 Report

Search the DGRC for LD23953

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:239
Well:53
Vector:pOT2
Associated Gene/TranscriptSce-RA
Protein status:LD23953.pep: gold
Preliminary Size:2200
Sequenced Size:1534

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5595 2001-01-01 Release 2 assignment
CG5595 2001-09-19 Blastp of sequenced clone
CG5595 2003-01-01 Sim4 clustering to Release 3
Sce 2008-04-29 Release 5.5 accounting
Sce 2008-08-15 Release 5.9 accounting
Sce 2008-12-18 5.12 accounting

Clone Sequence Records

LD23953.complete Sequence

1534 bp (1534 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058535

> LD23953.complete
CACACTTCAAGCTAATTTGGAAAATCTTAGCGAAAATTTCGTAAAAAGTG
GTGTTTGTGTATTGAAAAGCCTCAGAATTGGTGTGAAAATGACGTCGCTG
GACCCGGCGCCAAACAAAACGTGGGAGCTGTCGCTGTACGAGCTGCAGCG
CAAGCCGCAGGAGGTGATCACGGACAGCACGGAAATCGCGGTGTCCCCGC
GGAGCCTCCACAGCGAACTGATGTGTCCCATCTGCCTGGACATGCTGAAG
AAGACGATGACGACGAAGGAGTGCCTGCACCGCTTCTGCTCCGACTGCAT
TGTGACCGCCCTGCGTTCGGGCAATAAGGAGTGCCCCACGTGCCGCAAGA
AGCTCGTCTCCAAGCGCTCCCTGCGCGCCGATCCCAACTTCGACCTGCTC
ATCTCGAAGATCTACCCCAGTCGCGAGGAATACGAGGCCATCCAGGAGAA
GGTGATGGCTAAGTTCAACCAGACGCAGTCGCAGCAGGCGCTGGTCAACT
CCATCAACGAGGGCATCAAGCTGCAGTCCCAGAACCGGCCACAAAGATTC
CGCACCAAGGGCGGCGGCGGTGGTGGTGGTGGAGGTGGTAATGGAAATGG
TGCTGCCAATGTCGCAGCTCCGCCTGCACCTGGTGCACCCACTGCTGTGG
GTCGCAATGCCTCCAACCAAATGCACGTCCACGACACAGCCTCCAATGAT
AGCAACAGCAATACCAACAGCATTGATCGCGAGAACCGGGATCCGGGTCA
TTCGGGCACATCGGCAGCATCGGCCATAACGAGCGCCTCGAATGCTGCGC
CCTCGTCGTCGGCAAACTCGGGCGCCAGCACATCCGCCACTCGGATGCAG
GTGGACGACGCTTCCAATCCCCCCTCGGTGCGGAGCACTCCGTCACCAGT
GCCCTCCAACTCGAGCAGCTCCAAGCCGAAGCGCGCCATGTCGGTGCTGA
CTTCGGAGCGGTCCGAGGAGTCCGAGTCGGATTCACAGATGGACTGCCGC
ACCGAGGGTGACTCCAACATCGACACAGAGGGCGAGGGCAATGGCGAGCT
GGGCATCAACGATGAAATCGAGCTCGTCTTCAAGCCCCATCCCACGGAGA
TGTCGGCGGACAACCAGCTCATACGGGCACTCAAGGAGAACTGTGTGCGC
TACATCAAGACCACGGCAAATGCCACCGTCGATCATCTCAGCAAGTATCT
GGCCATGCGGCTCACGCTCGACCTGGGCGCCGATTTGCCAGAGGCTTGTC
GCGTGCTCAACTTTTGCATCTACGTCGCTCCACAGCCACAGCAGTTGGTT
ATCCTGAATGGCAACCAGACGTTGCACCAGGTCAACGACAAATTCTGGAA
GGTAAACAAACCTATGGAAATGTATTACTCGTGGAAGAAAACCTAAGCTG
TACGAAGCGTTTTAGTATTAGGCCGTTTATTTCTGAAATGGAAATATGTC
TAGCTGTAGAGCTTAACACACGTATATAAAGCATTCATGTACCACAAAAT
ATATTTAATTGTAAGTAAAAAAAAAAAAAAAAAA

LD23953.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
Sce-RA 1804 Sce-RA 27..1546 1..1520 7600 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23503577..23504929 1353..1 6720 99.8 Minus
chr3R 27901430 chr3R 23503357..23503523 1516..1350 820 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27680651..27682003 1353..1 6765 100 Minus
3R 32079331 3R 27680427..27680597 1520..1350 855 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27421482..27422834 1353..1 6765 100 Minus
3R 31820162 3R 27421258..27421428 1520..1350 855 100 Minus
Blast to na_te.dros performed 2019-03-16 21:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2868..2982 624..736 119 60.7 Plus

LD23953.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:51:01 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23503357..23503521 1352..1516 99 <- Minus
chr3R 23503579..23504929 1..1351 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:24 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 1..1308 89..1396 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:33 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 1..1308 89..1396 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:06:32 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 1..1308 89..1396 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:09 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 1..1308 89..1396 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:47 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 1..1308 89..1396 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:12 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 22..1537 1..1516 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:32 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 22..1537 1..1516 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:32 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 27..1542 1..1516 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:09 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 22..1537 1..1516 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:47 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
Sce-RA 27..1542 1..1516 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:01 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27680653..27682003 1..1351 100   Minus
3R 27680431..27680595 1352..1516 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:01 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27680653..27682003 1..1351 100   Minus
3R 27680431..27680595 1352..1516 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:01 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27680653..27682003 1..1351 100   Minus
3R 27680431..27680595 1352..1516 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:32 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23506153..23506317 1352..1516 100 <- Minus
arm_3R 23506375..23507725 1..1351 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:00 Download gff for LD23953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27421262..27421426 1352..1516 100 <- Minus
3R 27421484..27422834 1..1351 100   Minus

LD23953.hyp Sequence

Translation from 0 to 1395

> LD23953.hyp
TLQANLENLSENFVKSGVCVLKSLRIGVKMTSLDPAPNKTWELSLYELQR
KPQEVITDSTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCI
VTALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSREEYEAIQEK
VMAKFNQTQSQQALVNSINEGIKLQSQNRPQRFRTKGGGGGGGGGGNGNG
AANVAAPPAPGAPTAVGRNASNQMHVHDTASNDSNSNTNSIDRENRDPGH
SGTSAASAITSASNAAPSSSANSGASTSATRMQVDDASNPPSVRSTPSPV
PSNSSSSKPKRAMSVLTSERSEESESDSQMDCRTEGDSNIDTEGEGNGEL
GINDEIELVFKPHPTEMSADNQLIRALKENCVRYIKTTANATVDHLSKYL
AMRLTLDLGADLPEACRVLNFCIYVAPQPQQLVILNGNQTLHQVNDKFWK
VNKPMEMYYSWKKT*

LD23953.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sce-PA 435 CG5595-PA 1..435 30..464 2263 100 Plus

LD23953.pep Sequence

Translation from 88 to 1395

> LD23953.pep
MTSLDPAPNKTWELSLYELQRKPQEVITDSTEIAVSPRSLHSELMCPICL
DMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADPN
FDLLISKIYPSREEYEAIQEKVMAKFNQTQSQQALVNSINEGIKLQSQNR
PQRFRTKGGGGGGGGGGNGNGAANVAAPPAPGAPTAVGRNASNQMHVHDT
ASNDSNSNTNSIDRENRDPGHSGTSAASAITSASNAAPSSSANSGASTSA
TRMQVDDASNPPSVRSTPSPVPSNSSSSKPKRAMSVLTSERSEESESDSQ
MDCRTEGDSNIDTEGEGNGELGINDEIELVFKPHPTEMSADNQLIRALKE
NCVRYIKTTANATVDHLSKYLAMRLTLDLGADLPEACRVLNFCIYVAPQP
QQLVILNGNQTLHQVNDKFWKVNKPMEMYYSWKKT*

LD23953.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18697-PA 432 GF18697-PA 1..432 1..435 1784 87.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12099-PA 435 GG12099-PA 1..435 1..435 2325 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17005-PA 437 GH17005-PA 1..437 1..435 1680 82.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Sce-PA 435 CG5595-PA 1..435 1..435 2263 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10743-PA 440 GI10743-PA 1..440 1..435 1670 78.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13768-PA 439 GL13768-PA 1..439 1..435 1845 91.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18995-PA 439 GA18995-PA 1..439 1..435 1845 91.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16329-PA 434 GM16329-PA 1..434 1..435 2318 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18065-PA 436 GD18065-PA 1..436 1..435 2316 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10686-PA 443 GJ10686-PA 1..443 1..435 1715 82.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11322-PA 421 GK11322-PA 1..421 1..435 1804 89.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10548-PA 439 GE10548-PA 1..439 1..435 2317 98.4 Plus