Clone LD23954 Report

Search the DGRC for LD23954

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:239
Well:54
Vector:pOT2
Associated Gene/TranscriptGdh-RA
Protein status:LD23954.pep: gold
Preliminary Size:2267
Sequenced Size:2191

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5320 2001-01-01 Release 2 assignment
CG5320 2001-10-10 Blastp of sequenced clone
CG5320 2003-01-01 Sim4 clustering to Release 3
Gdh 2008-04-29 Release 5.5 accounting
Gdh 2008-08-15 Release 5.9 accounting
Gdh 2008-12-18 5.12 accounting

Clone Sequence Records

LD23954.complete Sequence

2191 bp (2191 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061323

> LD23954.complete
TAGCGAGCGGTTGTGTAGAACAGAATAAAAAAAGAGTTGGAACCCGAAGA
ATCCAAGCGATTAGCAGCATGTATCACCTGAAGAGTCTGGCCCGCCAGGG
CGCCCGCCGCCAGCAGGAGCTGGCCACGCTGGCCAAGGCACTGCCCACCG
CTGTGATGCAGTCGAGCCGCGGCTATGCCACCGAGCACCAGATTCCCGAC
CGCCTCAAGGATGTGCCCACCGCCAAGGATCCGCGCTTCTTCGACATGGT
CGAGTATTTCTTCCATCGCGGCTGCCAAATCGCCGAGGAATCGCTGGTGG
ACGACATGAAGGGCAAGCTGACCCGCGACGAGAAGAAGCAGAAGGTGAAG
GGCATCCTCATGCTGATGCAGCCCTGCGACCACATCATCGAGATCGCCTT
CCCCCTGCGCCGCGATGCCGGCAACTACGAGATGATCACCGGCTACCGCG
CCCAGCACAGCACCCACAAGACGCCCACCAAGGGAGGCATCCGTTTCTCG
TTGGATGTGTCACGCGATGAGGTCAAAGCCCTGTCCGCCCTGATGACCTT
CAAGTGCGCCTGCGTGGATGTGCCATTCGGCGGAGCCAAGGCCGGTCTGA
AGATCAACCCTAAGGAGTACTCCGAGCACGAGCTGGAGAAGATCACCCGT
CGCTTCACCCTTGAGTTGGCCAAGAAGGGCTTCATTGGACCCGGTGTCGA
TGTGCCCGCCCCCGACATGGGAACCGGTGAGCGCGAGATGTCCTGGATTG
CCGATACTTATGCCAAGACCATCGGTCACCTGGACATCAATGCTCATGCC
TGTGTCACCGGCAAGCCCATCAACCAGGGCGGTATCCACGGACGCGTCTC
GGCCACCGGTCGCGGTGTCTTCCACGGCCTGGAGAACTTCATCAACGAGG
CCAACTACATGAGCCAGATCGGCACCACTCCCGGCTGGGGCGGCAAGACC
TTCATCGTCCAGGGCTTCGGTAACGTGGGCCTGCACACCACTCGCTATCT
GACCCGCGCCGGAGCCACCTGCATCGGTGTCATTGAGCACGACGGCACTC
TGTACAACCCGGAGGGCATTGACCCTAAGCTGCTGGAGGACTACAAGAAC
GAGCACGGCACCATTGTGGGCTACCAGAACGCCAAGCCCTACGAGGGCGA
GAACCTCATGTTCGAGAAGTGCGACATCTTCATTCCCGCTGCCGTCGAGA
AGGTCATCACCAGCGAGAATGCCAACCGCATTCAAGCTAAGATCATTGCC
GAGGCTGCCAACGGCCCCACCACCCCCGCTGCCGACAAGATCCTCATCGA
TCGCAACATCCTGGTCATTCCCGATCTGTACATCAACGCCGGTGGTGTCA
CCGTCTCCTTCTTCGAGTGGCTGAAGAACCTGAACCACGTCTCGTACGGT
CGCCTGACCTTCAAGTATGAGCGCGAGTCCAACTACCATCTGCTTGCCTC
AGTCCAACAGTCAATTGAAAGAATCATTAATGACGAATCCGTTCAAGAGT
CCCTGGAGCGTCGCTTCGGCCGTGTGGGCGGTCGCATCCCCGTGACCCCC
TCCGAGTCGTTCCAGAAGCGCATCTCCGGCGCCTCCGAGAAGGATATCGT
GCACTCCGGCCTGGACTACACCATGGAGCGCTCCGCCCGCGCCATCATGA
AGACAGCCATGAAGTACAACCTGGGCCTGGACCTCAGAACCGCTGCCTAC
GTCAACTCCATTGAGAAGATCTTCACCACATACCGCGATGCCGGCCTGGC
CTTCTAAGCCCGCTGAGTGTGCTGATTAGCCCCCAGACTCTTAACTAGTT
AATTAAGCAATCGAACTCAAGAGCATAACTATTGCTATTGCTCCATGCAC
CGCCGTCTTAGATGAAAAGTCACAAAACCGAAATGCAAGAATCGTAATTT
ATATCTATGGCAATTGGAGCTGGCCAAAATAACTCTTTTAAAAAACAAAG
CAAAACAAAAGCGAACTTTCGCCCGTGTTTCGTATTAAGTTGAACAAGTT
GCGAGCTTATTATTGTTGATTTTCTGTAATTTTTAAGTTAATGAGCGTCA
AAGTGAAGCAATTGCATTTTCAATTATGTATCGCAACGTCTCGTACCGTC
AAGTCACGTTTATCGTACGATCGCTCCGTTGCCGTAACATTAAAATAATC
AAATATACACAAAACTAAACTCTAAAAAAAAAAAAAAAAAA

LD23954.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Gdh-RA 2197 Gdh-RA 23..2197 1..2175 10875 100 Plus
Gdh-RB 1830 Gdh-RB 142..1830 485..2173 8445 100 Plus
Gdh-RF 2159 Gdh-RF 24..1485 1..1462 7235 99.6 Plus
Gdh-RF 2159 Gdh-RF 1469..2159 1485..2175 3455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19759388..19760076 2173..1485 3430 99.9 Minus
chr3R 27901430 chr3R 19766020..19766508 489..1 2430 99.8 Minus
chr3R 27901430 chr3R 19761550..19761987 922..485 2175 99.8 Minus
chr3R 27901430 chr3R 19761162..19761482 1241..921 1605 100 Minus
chr3R 27901430 chr3R 19760855..19761059 1444..1240 1025 100 Minus
chr3R 27901430 chr3R 19760411..19760450 1485..1446 200 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23935955..23936646 2176..1485 3460 100 Minus
3R 32079331 3R 23942591..23943079 489..1 2445 100 Minus
3R 32079331 3R 23938120..23938557 922..485 2190 100 Minus
3R 32079331 3R 23937732..23938052 1241..921 1605 100 Minus
3R 32079331 3R 23937423..23937629 1446..1240 1035 100 Minus
3R 32079331 3R 23936981..23937020 1485..1446 200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23676786..23677477 2176..1485 3460 100 Minus
3R 31820162 3R 23683422..23683910 489..1 2445 100 Minus
3R 31820162 3R 23678951..23679388 922..485 2190 100 Minus
3R 31820162 3R 23678563..23678883 1241..921 1605 100 Minus
3R 31820162 3R 23678254..23678460 1446..1240 1035 100 Minus
3R 31820162 3R 23677812..23677851 1485..1446 200 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:56:08 has no hits.

LD23954.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:57:19 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19759388..19760075 1486..2173 99 <- Minus
chr3R 19760411..19760449 1447..1485 100 <- Minus
chr3R 19760853..19761057 1242..1446 99 <- Minus
chr3R 19761162..19761481 922..1241 100 <- Minus
chr3R 19761551..19761985 487..921 99 <- Minus
chr3R 19766023..19766508 1..486 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:25 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 1..1689 69..1757 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:35 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 1..1689 69..1757 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:46:07 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 1..1689 69..1757 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:29 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 1..1689 69..1757 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:59 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 1..1689 69..1757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:56 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 20..2192 1..2173 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:35 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 20..2192 1..2173 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:07 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 23..2195 1..2173 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:29 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 20..2192 1..2173 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:59 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 23..2195 1..2173 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:19 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23935958..23936645 1486..2173 100 <- Minus
3R 23936981..23937019 1447..1485 100 <- Minus
3R 23937423..23937627 1242..1446 100 <- Minus
3R 23937732..23938051 922..1241 100 <- Minus
3R 23938121..23938555 487..921 100 <- Minus
3R 23942594..23943079 1..486 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:19 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23935958..23936645 1486..2173 100 <- Minus
3R 23936981..23937019 1447..1485 100 <- Minus
3R 23937423..23937627 1242..1446 100 <- Minus
3R 23937732..23938051 922..1241 100 <- Minus
3R 23938121..23938555 487..921 100 <- Minus
3R 23942594..23943079 1..486 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:19 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23935958..23936645 1486..2173 100 <- Minus
3R 23936981..23937019 1447..1485 100 <- Minus
3R 23937423..23937627 1242..1446 100 <- Minus
3R 23937732..23938051 922..1241 100 <- Minus
3R 23938121..23938555 487..921 100 <- Minus
3R 23942594..23943079 1..486 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:07 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19761680..19762367 1486..2173 100 <- Minus
arm_3R 19762703..19762741 1447..1485 100 <- Minus
arm_3R 19763145..19763349 1242..1446 100 <- Minus
arm_3R 19763454..19763773 922..1241 100 <- Minus
arm_3R 19763843..19764277 487..921 100 <- Minus
arm_3R 19768316..19768801 1..486 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:22 Download gff for LD23954.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23676789..23677476 1486..2173 100 <- Minus
3R 23677812..23677850 1447..1485 100 <- Minus
3R 23678254..23678458 1242..1446 100 <- Minus
3R 23678563..23678882 922..1241 100 <- Minus
3R 23678952..23679386 487..921 100 <- Minus
3R 23683425..23683910 1..486 100   Minus

LD23954.hyp Sequence

Translation from 2 to 1756

> LD23954.hyp
ASGCVEQNKKRVGTRRIQAISSMYHLKSLARQGARRQQELATLAKALPTA
VMQSSRGYATEHQIPDRLKDVPTAKDPRFFDMVEYFFHRGCQIAEESLVD
DMKGKLTRDEKKQKVKGILMLMQPCDHIIEIAFPLRRDAGNYEMITGYRA
QHSTHKTPTKGGIRFSLDVSRDEVKALSALMTFKCACVDVPFGGAKAGLK
INPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIA
DTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFINEA
NYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHDGTL
YNPEGIDPKLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIPAAVEK
VITSENANRIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVT
VSFFEWLKNLNHVSYGRLTFKYERESNYHLLASVQQSIERIINDESVQES
LERRFGRVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMK
TAMKYNLGLDLRTAAYVNSIEKIFTTYRDAGLAF*

LD23954.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Gdh-PA 562 CG5320-PA 1..562 23..584 2932 100 Plus
Gdh-PF 549 CG5320-PF 1..549 23..584 2848 97.7 Plus
Gdh-PB 404 CG5320-PB 1..404 181..584 2116 100 Plus
Gdh-PD 391 CG5320-PD 1..391 181..584 2032 96.8 Plus
CG4434-PA 535 CG4434-PA 26..533 62..583 1222 46.6 Plus

LD23954.pep Sequence

Translation from 68 to 1756

> LD23954.pep
MYHLKSLARQGARRQQELATLAKALPTAVMQSSRGYATEHQIPDRLKDVP
TAKDPRFFDMVEYFFHRGCQIAEESLVDDMKGKLTRDEKKQKVKGILMLM
QPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLDVSRD
EVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLEL
AKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTGKP
INQGGIHGRVSATGRGVFHGLENFINEANYMSQIGTTPGWGGKTFIVQGF
GNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEGIDPKLLEDYKNEHGTIV
GYQNAKPYEGENLMFEKCDIFIPAAVEKVITSENANRIQAKIIAEAANGP
TTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKY
ERESNYHLLASVQQSIERIINDESVQESLERRFGRVGGRIPVTPSESFQK
RISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGLDLRTAAYVNSIEK
IFTTYRDAGLAF*

LD23954.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17976-PA 561 GF17976-PA 1..561 1..562 2973 98.4 Plus
Dana\GF18014-PA 535 GF18014-PA 24..533 38..561 1251 46.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12388-PA 562 GG12388-PA 1..562 1..562 3021 99.6 Plus
Dere\GG12444-PA 535 GG12444-PA 19..533 31..561 1280 47.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19680-PA 557 GH19680-PA 1..557 1..562 2866 94.8 Plus
Dgri\GH20746-PA 535 GH20746-PA 25..533 39..561 1277 47.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Gdh-PA 562 CG5320-PA 1..562 1..562 2932 100 Plus
Gdh-PF 549 CG5320-PF 1..549 1..562 2848 97.7 Plus
Gdh-PB 404 CG5320-PB 1..404 159..562 2116 100 Plus
Gdh-PD 391 CG5320-PD 1..391 159..562 2032 96.8 Plus
bb8-PA 535 CG4434-PA 26..533 40..561 1222 46.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22276-PA 557 GI22276-PA 1..557 1..562 2862 94.7 Plus
Dmoj\GI23213-PA 522 GI23213-PA 14..520 39..561 1301 48.4 Plus
Dmoj\GI23212-PA 507 GI23212-PA 1..505 42..561 1284 49.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24163-PA 561 GL24163-PA 1..561 1..562 2973 98.2 Plus
Dper\GL23033-PA 533 GL23033-PA 2..531 20..561 1267 47.1 Plus
Dper\GL15416-PA 77 GL15416-PA 1..63 500..562 171 61.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18802-PA 561 GA18802-PA 1..561 1..562 2973 98.2 Plus
Dpse\GA18802-PB 548 GA18802-PB 1..548 1..562 2882 95.9 Plus
Dpse\GA18802-PC 404 GA18802-PC 1..404 159..562 2158 99.3 Plus
Dpse\GA23808-PA 529 GA23808-PA 25..528 40..560 1294 48.3 Plus
Dpse\GA18181-PA 533 GA18181-PA 2..531 20..561 1261 47.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23525-PA 558 GM23525-PA 1..558 1..562 2988 99.1 Plus
Dsec\GM23576-PA 535 GM23576-PA 16..533 25..561 1261 46 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18335-PA 562 GD18335-PA 1..562 1..562 3028 99.8 Plus
Dsim\GD18391-PA 535 GD18391-PA 16..533 25..561 1261 46 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24069-PA 557 GJ24069-PA 1..557 1..562 2874 95.2 Plus
Dvir\GJ22872-PA 535 GJ22872-PA 6..533 27..561 1291 47.8 Plus
Dvir\GJ22871-PA 507 GJ22871-PA 1..505 42..561 1272 47.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11603-PA 562 GK11603-PA 1..562 1..562 2980 98.2 Plus
Dwil\GK11580-PA 534 GK11580-PA 24..532 39..561 1257 47.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10843-PA 562 GE10843-PA 1..562 1..562 3021 99.6 Plus
Dyak\GE23967-PA 535 GE23967-PA 9..533 21..561 1295 46.8 Plus