BDGP Sequence Production Resources |
Search the DGRC for LD23954
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 239 |
Well: | 54 |
Vector: | pOT2 |
Associated Gene/Transcript | Gdh-RA |
Protein status: | LD23954.pep: gold |
Preliminary Size: | 2267 |
Sequenced Size: | 2191 |
Gene | Date | Evidence |
---|---|---|
CG5320 | 2001-01-01 | Release 2 assignment |
CG5320 | 2001-10-10 | Blastp of sequenced clone |
CG5320 | 2003-01-01 | Sim4 clustering to Release 3 |
Gdh | 2008-04-29 | Release 5.5 accounting |
Gdh | 2008-08-15 | Release 5.9 accounting |
Gdh | 2008-12-18 | 5.12 accounting |
2191 bp (2191 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061323
> LD23954.complete TAGCGAGCGGTTGTGTAGAACAGAATAAAAAAAGAGTTGGAACCCGAAGA ATCCAAGCGATTAGCAGCATGTATCACCTGAAGAGTCTGGCCCGCCAGGG CGCCCGCCGCCAGCAGGAGCTGGCCACGCTGGCCAAGGCACTGCCCACCG CTGTGATGCAGTCGAGCCGCGGCTATGCCACCGAGCACCAGATTCCCGAC CGCCTCAAGGATGTGCCCACCGCCAAGGATCCGCGCTTCTTCGACATGGT CGAGTATTTCTTCCATCGCGGCTGCCAAATCGCCGAGGAATCGCTGGTGG ACGACATGAAGGGCAAGCTGACCCGCGACGAGAAGAAGCAGAAGGTGAAG GGCATCCTCATGCTGATGCAGCCCTGCGACCACATCATCGAGATCGCCTT CCCCCTGCGCCGCGATGCCGGCAACTACGAGATGATCACCGGCTACCGCG CCCAGCACAGCACCCACAAGACGCCCACCAAGGGAGGCATCCGTTTCTCG TTGGATGTGTCACGCGATGAGGTCAAAGCCCTGTCCGCCCTGATGACCTT CAAGTGCGCCTGCGTGGATGTGCCATTCGGCGGAGCCAAGGCCGGTCTGA AGATCAACCCTAAGGAGTACTCCGAGCACGAGCTGGAGAAGATCACCCGT CGCTTCACCCTTGAGTTGGCCAAGAAGGGCTTCATTGGACCCGGTGTCGA TGTGCCCGCCCCCGACATGGGAACCGGTGAGCGCGAGATGTCCTGGATTG CCGATACTTATGCCAAGACCATCGGTCACCTGGACATCAATGCTCATGCC TGTGTCACCGGCAAGCCCATCAACCAGGGCGGTATCCACGGACGCGTCTC GGCCACCGGTCGCGGTGTCTTCCACGGCCTGGAGAACTTCATCAACGAGG CCAACTACATGAGCCAGATCGGCACCACTCCCGGCTGGGGCGGCAAGACC TTCATCGTCCAGGGCTTCGGTAACGTGGGCCTGCACACCACTCGCTATCT GACCCGCGCCGGAGCCACCTGCATCGGTGTCATTGAGCACGACGGCACTC TGTACAACCCGGAGGGCATTGACCCTAAGCTGCTGGAGGACTACAAGAAC GAGCACGGCACCATTGTGGGCTACCAGAACGCCAAGCCCTACGAGGGCGA GAACCTCATGTTCGAGAAGTGCGACATCTTCATTCCCGCTGCCGTCGAGA AGGTCATCACCAGCGAGAATGCCAACCGCATTCAAGCTAAGATCATTGCC GAGGCTGCCAACGGCCCCACCACCCCCGCTGCCGACAAGATCCTCATCGA TCGCAACATCCTGGTCATTCCCGATCTGTACATCAACGCCGGTGGTGTCA CCGTCTCCTTCTTCGAGTGGCTGAAGAACCTGAACCACGTCTCGTACGGT CGCCTGACCTTCAAGTATGAGCGCGAGTCCAACTACCATCTGCTTGCCTC AGTCCAACAGTCAATTGAAAGAATCATTAATGACGAATCCGTTCAAGAGT CCCTGGAGCGTCGCTTCGGCCGTGTGGGCGGTCGCATCCCCGTGACCCCC TCCGAGTCGTTCCAGAAGCGCATCTCCGGCGCCTCCGAGAAGGATATCGT GCACTCCGGCCTGGACTACACCATGGAGCGCTCCGCCCGCGCCATCATGA AGACAGCCATGAAGTACAACCTGGGCCTGGACCTCAGAACCGCTGCCTAC GTCAACTCCATTGAGAAGATCTTCACCACATACCGCGATGCCGGCCTGGC CTTCTAAGCCCGCTGAGTGTGCTGATTAGCCCCCAGACTCTTAACTAGTT AATTAAGCAATCGAACTCAAGAGCATAACTATTGCTATTGCTCCATGCAC CGCCGTCTTAGATGAAAAGTCACAAAACCGAAATGCAAGAATCGTAATTT ATATCTATGGCAATTGGAGCTGGCCAAAATAACTCTTTTAAAAAACAAAG CAAAACAAAAGCGAACTTTCGCCCGTGTTTCGTATTAAGTTGAACAAGTT GCGAGCTTATTATTGTTGATTTTCTGTAATTTTTAAGTTAATGAGCGTCA AAGTGAAGCAATTGCATTTTCAATTATGTATCGCAACGTCTCGTACCGTC AAGTCACGTTTATCGTACGATCGCTCCGTTGCCGTAACATTAAAATAATC AAATATACACAAAACTAAACTCTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gdh-RA | 2197 | Gdh-RA | 23..2197 | 1..2175 | 10875 | 100 | Plus |
Gdh-RB | 1830 | Gdh-RB | 142..1830 | 485..2173 | 8445 | 100 | Plus |
Gdh-RF | 2159 | Gdh-RF | 24..1485 | 1..1462 | 7235 | 99.6 | Plus |
Gdh-RF | 2159 | Gdh-RF | 1469..2159 | 1485..2175 | 3455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19759388..19760076 | 2173..1485 | 3430 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 19766020..19766508 | 489..1 | 2430 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 19761550..19761987 | 922..485 | 2175 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 19761162..19761482 | 1241..921 | 1605 | 100 | Minus |
chr3R | 27901430 | chr3R | 19760855..19761059 | 1444..1240 | 1025 | 100 | Minus |
chr3R | 27901430 | chr3R | 19760411..19760450 | 1485..1446 | 200 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 23935955..23936646 | 2176..1485 | 3460 | 100 | Minus |
3R | 32079331 | 3R | 23942591..23943079 | 489..1 | 2445 | 100 | Minus |
3R | 32079331 | 3R | 23938120..23938557 | 922..485 | 2190 | 100 | Minus |
3R | 32079331 | 3R | 23937732..23938052 | 1241..921 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 23937423..23937629 | 1446..1240 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 23936981..23937020 | 1485..1446 | 200 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23676786..23677477 | 2176..1485 | 3460 | 100 | Minus |
3R | 31820162 | 3R | 23683422..23683910 | 489..1 | 2445 | 100 | Minus |
3R | 31820162 | 3R | 23678951..23679388 | 922..485 | 2190 | 100 | Minus |
3R | 31820162 | 3R | 23678563..23678883 | 1241..921 | 1605 | 100 | Minus |
3R | 31820162 | 3R | 23678254..23678460 | 1446..1240 | 1035 | 100 | Minus |
3R | 31820162 | 3R | 23677812..23677851 | 1485..1446 | 200 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19759388..19760075 | 1486..2173 | 99 | <- | Minus |
chr3R | 19760411..19760449 | 1447..1485 | 100 | <- | Minus |
chr3R | 19760853..19761057 | 1242..1446 | 99 | <- | Minus |
chr3R | 19761162..19761481 | 922..1241 | 100 | <- | Minus |
chr3R | 19761551..19761985 | 487..921 | 99 | <- | Minus |
chr3R | 19766023..19766508 | 1..486 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 1..1689 | 69..1757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 1..1689 | 69..1757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 1..1689 | 69..1757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 1..1689 | 69..1757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 1..1689 | 69..1757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 20..2192 | 1..2173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 20..2192 | 1..2173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 23..2195 | 1..2173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 20..2192 | 1..2173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gdh-RA | 23..2195 | 1..2173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23935958..23936645 | 1486..2173 | 100 | <- | Minus |
3R | 23936981..23937019 | 1447..1485 | 100 | <- | Minus |
3R | 23937423..23937627 | 1242..1446 | 100 | <- | Minus |
3R | 23937732..23938051 | 922..1241 | 100 | <- | Minus |
3R | 23938121..23938555 | 487..921 | 100 | <- | Minus |
3R | 23942594..23943079 | 1..486 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23935958..23936645 | 1486..2173 | 100 | <- | Minus |
3R | 23936981..23937019 | 1447..1485 | 100 | <- | Minus |
3R | 23937423..23937627 | 1242..1446 | 100 | <- | Minus |
3R | 23937732..23938051 | 922..1241 | 100 | <- | Minus |
3R | 23938121..23938555 | 487..921 | 100 | <- | Minus |
3R | 23942594..23943079 | 1..486 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23935958..23936645 | 1486..2173 | 100 | <- | Minus |
3R | 23936981..23937019 | 1447..1485 | 100 | <- | Minus |
3R | 23937423..23937627 | 1242..1446 | 100 | <- | Minus |
3R | 23937732..23938051 | 922..1241 | 100 | <- | Minus |
3R | 23938121..23938555 | 487..921 | 100 | <- | Minus |
3R | 23942594..23943079 | 1..486 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19761680..19762367 | 1486..2173 | 100 | <- | Minus |
arm_3R | 19762703..19762741 | 1447..1485 | 100 | <- | Minus |
arm_3R | 19763145..19763349 | 1242..1446 | 100 | <- | Minus |
arm_3R | 19763454..19763773 | 922..1241 | 100 | <- | Minus |
arm_3R | 19763843..19764277 | 487..921 | 100 | <- | Minus |
arm_3R | 19768316..19768801 | 1..486 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23676789..23677476 | 1486..2173 | 100 | <- | Minus |
3R | 23677812..23677850 | 1447..1485 | 100 | <- | Minus |
3R | 23678254..23678458 | 1242..1446 | 100 | <- | Minus |
3R | 23678563..23678882 | 922..1241 | 100 | <- | Minus |
3R | 23678952..23679386 | 487..921 | 100 | <- | Minus |
3R | 23683425..23683910 | 1..486 | 100 | Minus |
Translation from 2 to 1756
> LD23954.hyp ASGCVEQNKKRVGTRRIQAISSMYHLKSLARQGARRQQELATLAKALPTA VMQSSRGYATEHQIPDRLKDVPTAKDPRFFDMVEYFFHRGCQIAEESLVD DMKGKLTRDEKKQKVKGILMLMQPCDHIIEIAFPLRRDAGNYEMITGYRA QHSTHKTPTKGGIRFSLDVSRDEVKALSALMTFKCACVDVPFGGAKAGLK INPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIA DTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFINEA NYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHDGTL YNPEGIDPKLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIPAAVEK VITSENANRIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVT VSFFEWLKNLNHVSYGRLTFKYERESNYHLLASVQQSIERIINDESVQES LERRFGRVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMK TAMKYNLGLDLRTAAYVNSIEKIFTTYRDAGLAF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gdh-PA | 562 | CG5320-PA | 1..562 | 23..584 | 2932 | 100 | Plus |
Gdh-PF | 549 | CG5320-PF | 1..549 | 23..584 | 2848 | 97.7 | Plus |
Gdh-PB | 404 | CG5320-PB | 1..404 | 181..584 | 2116 | 100 | Plus |
Gdh-PD | 391 | CG5320-PD | 1..391 | 181..584 | 2032 | 96.8 | Plus |
CG4434-PA | 535 | CG4434-PA | 26..533 | 62..583 | 1222 | 46.6 | Plus |
Translation from 68 to 1756
> LD23954.pep MYHLKSLARQGARRQQELATLAKALPTAVMQSSRGYATEHQIPDRLKDVP TAKDPRFFDMVEYFFHRGCQIAEESLVDDMKGKLTRDEKKQKVKGILMLM QPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLDVSRD EVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLEL AKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTGKP INQGGIHGRVSATGRGVFHGLENFINEANYMSQIGTTPGWGGKTFIVQGF GNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEGIDPKLLEDYKNEHGTIV GYQNAKPYEGENLMFEKCDIFIPAAVEKVITSENANRIQAKIIAEAANGP TTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKY ERESNYHLLASVQQSIERIINDESVQESLERRFGRVGGRIPVTPSESFQK RISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGLDLRTAAYVNSIEK IFTTYRDAGLAF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17976-PA | 561 | GF17976-PA | 1..561 | 1..562 | 2973 | 98.4 | Plus |
Dana\GF18014-PA | 535 | GF18014-PA | 24..533 | 38..561 | 1251 | 46.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12388-PA | 562 | GG12388-PA | 1..562 | 1..562 | 3021 | 99.6 | Plus |
Dere\GG12444-PA | 535 | GG12444-PA | 19..533 | 31..561 | 1280 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19680-PA | 557 | GH19680-PA | 1..557 | 1..562 | 2866 | 94.8 | Plus |
Dgri\GH20746-PA | 535 | GH20746-PA | 25..533 | 39..561 | 1277 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gdh-PA | 562 | CG5320-PA | 1..562 | 1..562 | 2932 | 100 | Plus |
Gdh-PF | 549 | CG5320-PF | 1..549 | 1..562 | 2848 | 97.7 | Plus |
Gdh-PB | 404 | CG5320-PB | 1..404 | 159..562 | 2116 | 100 | Plus |
Gdh-PD | 391 | CG5320-PD | 1..391 | 159..562 | 2032 | 96.8 | Plus |
bb8-PA | 535 | CG4434-PA | 26..533 | 40..561 | 1222 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22276-PA | 557 | GI22276-PA | 1..557 | 1..562 | 2862 | 94.7 | Plus |
Dmoj\GI23213-PA | 522 | GI23213-PA | 14..520 | 39..561 | 1301 | 48.4 | Plus |
Dmoj\GI23212-PA | 507 | GI23212-PA | 1..505 | 42..561 | 1284 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24163-PA | 561 | GL24163-PA | 1..561 | 1..562 | 2973 | 98.2 | Plus |
Dper\GL23033-PA | 533 | GL23033-PA | 2..531 | 20..561 | 1267 | 47.1 | Plus |
Dper\GL15416-PA | 77 | GL15416-PA | 1..63 | 500..562 | 171 | 61.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18802-PA | 561 | GA18802-PA | 1..561 | 1..562 | 2973 | 98.2 | Plus |
Dpse\GA18802-PB | 548 | GA18802-PB | 1..548 | 1..562 | 2882 | 95.9 | Plus |
Dpse\GA18802-PC | 404 | GA18802-PC | 1..404 | 159..562 | 2158 | 99.3 | Plus |
Dpse\GA23808-PA | 529 | GA23808-PA | 25..528 | 40..560 | 1294 | 48.3 | Plus |
Dpse\GA18181-PA | 533 | GA18181-PA | 2..531 | 20..561 | 1261 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23525-PA | 558 | GM23525-PA | 1..558 | 1..562 | 2988 | 99.1 | Plus |
Dsec\GM23576-PA | 535 | GM23576-PA | 16..533 | 25..561 | 1261 | 46 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18335-PA | 562 | GD18335-PA | 1..562 | 1..562 | 3028 | 99.8 | Plus |
Dsim\GD18391-PA | 535 | GD18391-PA | 16..533 | 25..561 | 1261 | 46 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24069-PA | 557 | GJ24069-PA | 1..557 | 1..562 | 2874 | 95.2 | Plus |
Dvir\GJ22872-PA | 535 | GJ22872-PA | 6..533 | 27..561 | 1291 | 47.8 | Plus |
Dvir\GJ22871-PA | 507 | GJ22871-PA | 1..505 | 42..561 | 1272 | 47.8 | Plus |