Clone LD23968 Report

Search the DGRC for LD23968

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:239
Well:68
Vector:pOT2
Associated Gene/TranscriptCG2263-RA
Protein status:LD23968.pep: gold
Preliminary Size:2200
Sequenced Size:1633

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2263 2001-01-01 Release 2 assignment
CG2263 2001-07-04 Blastp of sequenced clone
CG2263 2003-01-01 Sim4 clustering to Release 3
CG2263 2008-04-29 Release 5.5 accounting
CG2263 2008-08-15 Release 5.9 accounting
CG2263 2008-12-18 5.12 accounting

Clone Sequence Records

LD23968.complete Sequence

1633 bp (1633 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051694

> LD23968.complete
ATACAACCATTGAACCGCCAGCTATGCATCCCGATCTCACGGAGCGCATT
CTCCAGCATTTGGAGACCACCGACAAGGCGGACACACTGGACCTGGCCGC
ACTCTTTGCCGAGGATCACCAGAAGATTGTGGGCTCATTGAAGAGCATAC
AGGCGCATGGCGAACTAGTCACCGCGGAAACGGTCACCCACAAGAGTTTG
GGCCTCACAGACGAGGGTCGCGCCGTCGTGGAGAATGGCAGTCATGAGGC
ACTGGTCTACGACCTAGTTCCGCCGGAGGGAATCGCCCAGGCGGCTCTAA
TGGCAGCCGGTGGCGCAAATGCCAAAGTGGGCTTTAGCAAAGCCATGTCG
CACGGCTGGATTTTGGTGGACAAGAGCGTCACGCCGCCGCTGGTGCGCCG
CAAGGTGGACACCATTACGGATGTGGTGCGCAATCAACTGCAGCAGGTGG
CGCTGGGAAAGGGTGACCAGCTGCCTGCCAAGGAGGTGGCCGACTTCAAG
AAACGCAAGCTCCTCCAGGAAACGACCACCAAGAGCTTCGTGCTGGCACG
CGGCCCTGAATTTGCCACCACTCTCACCAAGTTGGAGACGGATCTCACGG
TGGAAATGCTCGCAAATGGATTGTGGGACCAGCTCAAGTTCAAGGCCTAT
AACTTTGATGCGTTGGGTGCACCACCAACGCGTGGACATCTCCATCCCTT
GCTCAAAGTGCGCACTGAGTTCCGGCAGATATTCCTCGAGATGGGCTTCT
CAGAGATGCCTACGAACAACTATGTGGAATCGTCATTCTGGAACTTCGAT
GCGCTCTATCAGCCGCAACAGCATCCAGCTCGCGATGCCCACGACACCTT
CTTCGTGAATCATCCGGCCAAAAGCCACAAGTTTCCGCAGGACTATCTGG
AGCGCGTGAAGAAGGTGCACTCTGTGGGTGGCTATGGATCGAAGGGTTAC
GGCTACGACTGGAAGCTGGAGGAGGCGCAGAAGAATCTACTGCGCACGCA
TACGACGGCCGTGAGTGCGAGGATGCTGTACAAGCTGGCCAACCAGGAGG
GCGGCTTCAAAGCAGCCAAGTACTTCAGCATCGACAAGGTGTTCCGCAAC
GAAACACTGGACGCCACACATCTGGCGGAGTTCCATCAGGTGGAGGGCGT
GATTGCAGATGTTGGTCTGACGCTGGGCGATCTCATTGGCACGCTGTACG
AGTTCTTCAGAAAGCTGGGCATCACGCAGCTTGAATTCAAGCCGGCGTAC
AATCCGTACACCGAGCCCAGCATGGAGATCTTCTGCTATCACCCCGGCCT
GGCCAAGTGGATCGAGGTGGGCAACTCGGGCGTCTTCCGGCCGGAGATGC
TGCTGCCCATGGGACTGCCGGAGAACGTGAATGTAATCGCCTGGGGTCTG
TCGCTGGAGCGACCCACCATGATCAAGTACGGCATCAACAACATTCGCGA
TTTGGTCGGACCCAAAGTGGATCTAAAGATGGTGGAGGAGGGCCCCATCT
GCCGGCTGGATCATGCTTAATACCTTAAAAAATCAATAGGACCTGCGATC
AAATTGCATTTTTTTTCACACATGAATGTTCCAAAACATATTTATAAATA
AAAGTTCCGCCACAGAAAAAAAAAAAAAAAAAA

LD23968.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2263-RA 1698 CG2263-RA 84..1698 1..1615 8075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8035740..8037354 1615..1 8075 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8143901..8145518 1618..1 8090 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8151999..8153616 1618..1 8090 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:29:04 has no hits.

LD23968.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:30:10 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8035740..8037354 1..1615 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:29 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 1..1497 24..1520 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:57 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 1..1497 24..1520 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:03:42 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 1..1497 24..1520 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:34 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 1..1497 24..1520 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:59 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 1..1497 24..1520 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:04 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 84..1698 1..1615 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:57 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 84..1698 1..1615 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:03:42 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 85..1699 1..1615 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:34 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 84..1698 1..1615 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:59 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
CG2263-RA 85..1699 1..1615 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:10 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
X 8143904..8145518 1..1615 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:10 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
X 8143904..8145518 1..1615 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:10 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
X 8143904..8145518 1..1615 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:03:42 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8037937..8039551 1..1615 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:16 Download gff for LD23968.complete
Subject Subject Range Query Range Percent Splice Strand
X 8152002..8153616 1..1615 100   Minus

LD23968.hyp Sequence

Translation from 2 to 1519

> LD23968.hyp
TTIEPPAMHPDLTERILQHLETTDKADTLDLAALFAEDHQKIVGSLKSIQ
AHGELVTAETVTHKSLGLTDEGRAVVENGSHEALVYDLVPPEGIAQAALM
AAGGANAKVGFSKAMSHGWILVDKSVTPPLVRRKVDTITDVVRNQLQQVA
LGKGDQLPAKEVADFKKRKLLQETTTKSFVLARGPEFATTLTKLETDLTV
EMLANGLWDQLKFKAYNFDALGAPPTRGHLHPLLKVRTEFRQIFLEMGFS
EMPTNNYVESSFWNFDALYQPQQHPARDAHDTFFVNHPAKSHKFPQDYLE
RVKKVHSVGGYGSKGYGYDWKLEEAQKNLLRTHTTAVSARMLYKLANQEG
GFKAAKYFSIDKVFRNETLDATHLAEFHQVEGVIADVGLTLGDLIGTLYE
FFRKLGITQLEFKPAYNPYTEPSMEIFCYHPGLAKWIEVGNSGVFRPEML
LPMGLPENVNVIAWGLSLERPTMIKYGINNIRDLVGPKVDLKMVEEGPIC
RLDHA*

LD23968.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2263-PA 498 CG2263-PA 1..498 8..505 2606 100 Plus

LD23968.pep Sequence

Translation from 23 to 1519

> LD23968.pep
MHPDLTERILQHLETTDKADTLDLAALFAEDHQKIVGSLKSIQAHGELVT
AETVTHKSLGLTDEGRAVVENGSHEALVYDLVPPEGIAQAALMAAGGANA
KVGFSKAMSHGWILVDKSVTPPLVRRKVDTITDVVRNQLQQVALGKGDQL
PAKEVADFKKRKLLQETTTKSFVLARGPEFATTLTKLETDLTVEMLANGL
WDQLKFKAYNFDALGAPPTRGHLHPLLKVRTEFRQIFLEMGFSEMPTNNY
VESSFWNFDALYQPQQHPARDAHDTFFVNHPAKSHKFPQDYLERVKKVHS
VGGYGSKGYGYDWKLEEAQKNLLRTHTTAVSARMLYKLANQEGGFKAAKY
FSIDKVFRNETLDATHLAEFHQVEGVIADVGLTLGDLIGTLYEFFRKLGI
TQLEFKPAYNPYTEPSMEIFCYHPGLAKWIEVGNSGVFRPEMLLPMGLPE
NVNVIAWGLSLERPTMIKYGINNIRDLVGPKVDLKMVEEGPICRLDHA*

LD23968.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21306-PA 498 GF21306-PA 1..497 1..497 2410 92.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17983-PA 498 GG17983-PA 1..498 1..498 2629 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24862-PA 497 GH24862-PA 1..496 1..497 2250 85.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-PheRS-PA 498 CG2263-PA 1..498 1..498 2606 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14412-PA 497 GI14412-PA 1..497 1..498 2268 86.1 Plus
Dmoj\GI16265-PA 498 GI16265-PA 8..497 4..497 1926 74.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20191-PA 523 GL20191-PA 1..232 1..232 869 75.1 Plus
Dper\GL20191-PA 523 GL20191-PA 418..515 395..492 389 75.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15333-PA 498 GA15333-PA 1..496 1..496 2230 86.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11206-PA 498 GM11206-PA 1..498 1..498 2654 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16126-PA 445 GD16126-PA 1..431 1..431 2282 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18760-PA 497 GJ18760-PA 1..496 1..497 2293 87.3 Plus
Dvir\GJ16906-PA 502 GJ16906-PA 1..501 1..497 1984 76.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19958-PA 501 GK19958-PA 1..501 1..498 2258 86.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17477-PA 498 GE17477-PA 1..497 1..497 2618 97.8 Plus