Clone LD24026 Report

Search the DGRC for LD24026

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:240
Well:26
Vector:pOT2
Associated Gene/TranscriptTrip1-RA
Protein status:LD24026.pep: gold
Preliminary Size:1264
Sequenced Size:1174

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8882 2001-01-01 Release 2 assignment
CG8882 2002-05-17 Blastp of sequenced clone
CG8882 2003-01-01 Sim4 clustering to Release 3
Trip1 2008-04-29 Release 5.5 accounting
Trip1 2008-08-15 Release 5.9 accounting
Trip1 2008-12-18 5.12 accounting

Clone Sequence Records

LD24026.complete Sequence

1174 bp (1174 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118527

> LD24026.complete
CTGCGTGGATGTTGTTGCAAAAATATTCGTTTTCTCGCAACAAATAACAA
TATAATACAAAATGCGTCCGTTGATGCTTCAGGGCCACGAGCGTTCCATA
ACGCAAATCAAGTACAACCGCGAGGGCGACCTGCTCTTCTCCTGCTCCAA
GGATCAGAAGCCCAATGTGTGGTACTCGCTGAACGGAGAACGTTTGGGCA
CCTACGATGGTCACCAGGGTGCGGTCTGGTGCCTGGATGTGGACTGGGAG
AGCCGTAAGCTCATCACCGGCGCCGGTGATATGACCGCTAAGATCTGGGA
CGTCGAGTACGGCACCGTTATCGCCTCCATTCCGACCAAGTCATCGGTGC
GCACCAGCAACTTCAGCTTCTCGGGCAACCAGGCAGCCTACTCAACGGAC
AAAGCGATGGGACAGAGCTGTGAACTGTTCCTCATCGATGTCCGCAACGC
CGATTCCTCGTTGTCGGAGCAGGAGCCCACACTCCGCATCCCGATGACCG
AGTCCAAAATTACGTCGATGTTGTGGGGTCCTCTGGATGAGACCATCATC
ACAGGTCACGATAATGGCAACATTGCCATCTGGGACATCCGTAAGGGTCA
AAAGGTGGTTGACTCTGGCACGGATCACAGCGCTGGCATCAACGACATGC
AGTTGAGCAAGGATGGCACCATGTTTGTGACCGCCTCCAAGGACACCACC
GCCAAATTGTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTACAAAAC
GGAGCGTCCAGTAAACTCGGCGGCCATCAGCCCAATCATGGATCATGTCG
TGCTGGGCGGCGGTCAAGATGCCATGGAGGTGACCACTACGTCTACGAAG
GCTGGCAAGTTTGACTCGCGCTTCTTCCACCTGATATACGAGGAGGAGTT
CGCCCGACTCAAGGGCCATTTCGGACCCATCAACAGTTTGGCCTTCCATC
CGGACGGCAAGAGTTACGCCTCGGGCGGAGAAGATGGTTTCGTGCGTGTC
CAGACATTCGATAGTACATACTTTGAGAACATCTTCGAGTAGTTTGTATC
CAGTAGTGATTTAGTAGGATCAGAGCCGGTGGACTTAACATAACCATTTC
ACCGGCGACATGTTCGTTTGCTTAGGGAACTTTCAAATATACGCGAGGAC
GAAACGAAAAAAAAAAAAAAAAAA

LD24026.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-RA 1328 Trip1-RA 74..1232 1..1159 5795 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4965467..4966071 1156..552 3025 100 Minus
chr2L 23010047 chr2L 4966122..4966614 556..64 2465 100 Minus
chr2L 23010047 chr2L 4966791..4966854 64..1 320 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4966364..4966971 1159..552 3040 100 Minus
2L 23513712 2L 4967022..4967514 556..64 2465 100 Minus
2L 23513712 2L 4967691..4967754 64..1 320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4966364..4966971 1159..552 3040 100 Minus
2L 23513712 2L 4967022..4967514 556..64 2465 100 Minus
2L 23513712 2L 4967691..4967754 64..1 320 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:44:34 has no hits.

LD24026.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:45:19 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4965467..4966068 555..1156 100 <- Minus
chr2L 4966124..4966613 65..554 100 <- Minus
chr2L 4966791..4966854 1..64 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:33 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 1..981 62..1042 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:04 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 1..981 62..1042 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:04:58 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 1..981 62..1042 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:35 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 1..981 62..1042 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:58 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 1..981 62..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:25:52 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 25..1180 1..1156 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:04 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 25..1180 1..1156 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:04:58 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 22..1177 1..1156 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:36 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 25..1180 1..1156 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:58 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 22..1177 1..1156 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:19 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4966367..4966968 555..1156 100 <- Minus
2L 4967024..4967513 65..554 100 <- Minus
2L 4967691..4967754 1..64 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:19 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4966367..4966968 555..1156 100 <- Minus
2L 4967024..4967513 65..554 100 <- Minus
2L 4967691..4967754 1..64 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:19 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4966367..4966968 555..1156 100 <- Minus
2L 4967024..4967513 65..554 100 <- Minus
2L 4967691..4967754 1..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:04:58 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4966367..4966968 555..1156 100 <- Minus
arm_2L 4967024..4967513 65..554 100 <- Minus
arm_2L 4967691..4967754 1..64 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:55 Download gff for LD24026.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4966367..4966968 555..1156 100 <- Minus
2L 4967024..4967513 65..554 100 <- Minus
2L 4967691..4967754 1..64 100   Minus

LD24026.pep Sequence

Translation from 61 to 1041

> LD24026.pep
MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDG
HQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSN
FSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKI
TSMLWGPLDETIITGHDNGNIAIWDIRKGQKVVDSGTDHSAGINDMQLSK
DGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAAISPIMDHVVLGG
GQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGK
SYASGGEDGFVRVQTFDSTYFENIFE*

LD24026.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23646-PA 332 GF23646-PA 8..332 2..326 1721 97.2 Plus
Dana\GF11838-PA 328 GF11838-PA 10..295 3..313 289 28 Plus
Dana\GF10412-PA 403 GF10412-PA 16..310 8..322 199 26.2 Plus
Dana\GF22217-PA 361 GF22217-PA 68..338 6..297 197 25.3 Plus
Dana\GF20700-PA 347 GF20700-PA 47..337 3..308 188 24.4 Plus
Dana\GF22217-PA 361 GF22217-PA 110..348 6..239 170 26.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24335-PA 326 GG24335-PA 1..326 1..326 1754 99.7 Plus
Dere\GG20020-PA 328 GG20020-PA 10..295 3..313 290 28.7 Plus
Dere\GG24701-PA 347 GG24701-PA 47..337 3..308 206 25.9 Plus
Dere\GG12938-PA 361 GG12938-PA 68..338 6..297 197 25.3 Plus
Dere\GG13777-PA 390 GG13777-PA 16..310 8..322 184 24.1 Plus
Dere\GG12938-PA 361 GG12938-PA 110..348 6..239 170 26.2 Plus
Dere\GG13777-PA 390 GG13777-PA 52..256 2..218 155 22 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10244-PA 326 GH10244-PA 1..326 1..326 1690 95.1 Plus
Dgri\GH20440-PA 328 GH20440-PA 10..295 3..313 300 29 Plus
Dgri\GH24921-PA 357 GH24921-PA 64..343 6..306 197 23.9 Plus
Dgri\GH22852-PA 323 GH22852-PA 7..311 3..320 194 22.3 Plus
Dgri\GH11537-PA 347 GH11537-PA 47..326 3..297 189 24.6 Plus
Dgri\GH24921-PA 357 GH24921-PA 106..344 6..239 171 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
eIF3i-PA 326 CG8882-PA 1..326 1..326 1716 100 Plus
wmd-PB 328 CG3957-PB 10..304 3..320 290 29.3 Plus
wmd-PA 328 CG3957-PA 10..304 3..320 290 29.3 Plus
CG3436-PC 347 CG3436-PC 49..337 4..308 211 25.2 Plus
CG3436-PA 347 CG3436-PA 49..337 4..308 211 25.2 Plus
wds-PB 361 CG17437-PB 68..345 6..304 207 25.2 Plus
wds-PA 361 CG17437-PA 68..345 6..304 207 25.2 Plus
Poc1-PA 391 CG10191-PA 16..310 8..322 202 25 Plus
Poc1-PB 403 CG10191-PB 16..310 8..322 202 25 Plus
wds-PB 361 CG17437-PB 110..348 6..239 176 26.6 Plus
wds-PA 361 CG17437-PA 110..348 6..239 176 26.6 Plus
wda-PA 743 CG4448-PA 493..718 6..243 176 22.3 Plus
Poc1-PA 391 CG10191-PA 52..256 2..218 160 22 Plus
Poc1-PB 403 CG10191-PB 52..256 2..218 160 22 Plus
ebi-PA 700 CG4063-PA 411..658 11..262 158 23.3 Plus
CG3909-PA 331 CG3909-PA 81..292 6..228 151 19.3 Plus
Gbeta76C-PA 346 CG8770-PA 57..218 50..218 151 32.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15375-PA 322 GI15375-PA 1..322 5..326 1684 96.3 Plus
Dmoj\GI19623-PA 328 GI19623-PA 10..295 3..313 308 29.6 Plus
Dmoj\GI21774-PA 358 GI21774-PA 65..344 6..306 197 25.2 Plus
Dmoj\GI17028-PA 347 GI17028-PA 47..337 3..308 190 24.4 Plus
Dmoj\GI21774-PA 358 GI21774-PA 107..345 6..239 170 26.2 Plus
Dmoj\GI11850-PA 402 GI11850-PA 11..251 48..313 168 21 Plus
Dmoj\GI11850-PA 402 GI11850-PA 49..253 2..218 153 22 Plus
Dmoj\GI11850-PA 402 GI11850-PA 13..307 8..322 152 21.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26537-PA 326 GL26537-PA 1..326 1..326 1708 95.4 Plus
Dper\GL17603-PA 328 GL17603-PA 10..295 3..313 283 28.3 Plus
Dper\GL18847-PA 347 GL18847-PA 47..326 3..297 205 26.4 Plus
Dper\GL13093-PA 356 GL13093-PA 63..342 6..306 198 25.1 Plus
Dper\GL21559-PA 413 GL21559-PA 16..310 8..322 182 24.7 Plus
Dper\GL13093-PA 356 GL13093-PA 105..343 6..239 168 25.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21387-PA 326 GA21387-PA 1..326 1..326 1708 95.4 Plus
Dpse\GA17804-PA 328 GA17804-PA 10..295 3..313 283 28.3 Plus
Dpse\GA17451-PA 347 GA17451-PA 47..326 3..297 205 26.4 Plus
Dpse\GA14510-PA 356 GA14510-PA 63..342 6..306 198 25.1 Plus
Dpse\GA10144-PA 413 GA10144-PA 16..310 8..322 182 24.7 Plus
Dpse\GA14510-PA 356 GA14510-PA 105..343 6..239 168 25.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18055-PA 326 GM18055-PA 1..326 1..326 1759 100 Plus
Dsec\GM15531-PA 328 GM15531-PA 10..295 3..313 288 28.3 Plus
Dsec\GM16719-PA 347 GM16719-PA 47..337 3..308 201 25.6 Plus
Dsec\GM19230-PA 361 GM19230-PA 68..347 6..306 196 24.8 Plus
Dsec\GM24599-PA 389 GM24599-PA 16..310 8..322 194 25 Plus
Dsec\GM19230-PA 361 GM19230-PA 110..348 6..239 170 26.2 Plus
Dsec\GM24599-PA 389 GM24599-PA 52..256 2..218 168 22.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22675-PA 326 GD22675-PA 1..326 1..326 1756 99.7 Plus
Dsim\GD23005-PA 347 GD23005-PA 47..337 3..308 201 25.6 Plus
Dsim\GD16610-PA 361 GD16610-PA 68..347 6..306 196 24.8 Plus
Dsim\GD12669-PA 389 GD12669-PA 16..310 8..322 192 24.7 Plus
Dsim\GD16610-PA 361 GD16610-PA 110..348 6..239 170 26.2 Plus
Dsim\GD12669-PA 389 GD12669-PA 52..256 2..218 167 22.9 Plus
Dsim\GD22949-PA 483 GD22949-PA 154..483 8..316 158 23.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17275-PA 325 GJ17275-PA 1..325 2..326 1716 97.2 Plus
Dvir\GJ14989-PA 328 GJ14989-PA 10..295 3..313 301 29.3 Plus
Dvir\GJ16947-PA 358 GJ16947-PA 65..344 6..306 198 25.2 Plus
Dvir\GJ24581-PA 347 GJ24581-PA 47..337 3..308 192 24.7 Plus
Dvir\GJ22876-PA 752 GJ22876-PA 489..694 4..178 173 25.6 Plus
Dvir\GJ16947-PA 358 GJ16947-PA 107..345 6..239 171 26.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24461-PA 322 GK24461-PA 1..322 5..326 1661 94.7 Plus
Dwil\GK23046-PA 328 GK23046-PA 10..295 3..313 290 28 Plus
Dwil\GK19997-PA 358 GK19997-PA 65..344 6..306 198 25.2 Plus
Dwil\GK23911-PA 347 GK23911-PA 47..326 3..297 185 23.9 Plus
Dwil\GK10412-PA 414 GK10412-PA 16..310 8..322 178 23.3 Plus
Dwil\GK19997-PA 358 GK19997-PA 107..345 6..239 170 26.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Trip1-PA 325 GE18714-PA 1..325 2..326 1740 99.1 Plus
Dyak\GE11556-PA 328 GE11556-PA 10..295 3..313 290 28.7 Plus
Dyak\GE16626-PA 347 GE16626-PA 47..337 3..308 204 25.9 Plus
Dyak\GE20071-PA 391 GE20071-PA 16..310 8..322 199 25.3 Plus
Dyak\GE16263-PA 361 GE16263-PA 68..347 6..306 197 25.2 Plus
Dyak\GE16263-PA 361 GE16263-PA 110..348 6..239 170 26.2 Plus
Dyak\GE20071-PA 391 GE20071-PA 52..256 2..218 162 22 Plus

LD24026.hyp Sequence

Translation from 61 to 1041

> LD24026.hyp
MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDG
HQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSN
FSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKI
TSMLWGPLDETIITGHDNGNIAIWDIRKGQKVVDSGTDHSAGINDMQLSK
DGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAAISPIMDHVVLGG
GQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGK
SYASGGEDGFVRVQTFDSTYFENIFE*

LD24026.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-PA 326 CG8882-PA 1..326 1..326 1716 100 Plus
wmd-PB 328 CG3957-PB 10..304 3..320 290 29.3 Plus
wmd-PA 328 CG3957-PA 10..304 3..320 290 29.3 Plus
CG3436-PC 347 CG3436-PC 49..337 4..308 211 25.2 Plus
CG3436-PA 347 CG3436-PA 49..337 4..308 211 25.2 Plus