BDGP Sequence Production Resources |
Search the DGRC for LD24048
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 240 |
Well: | 48 |
Vector: | pOT2 |
Associated Gene/Transcript | U2af38-RA |
Protein status: | LD24048.pep: gold |
Preliminary Size: | 4600 |
Sequenced Size: | 1254 |
Gene | Date | Evidence |
---|---|---|
CG3582 | 2001-01-01 | Release 2 assignment |
CG3582 | 2001-09-19 | Blastp of sequenced clone |
CG3582 | 2003-01-01 | Sim4 clustering to Release 3 |
U2af38 | 2008-04-29 | Release 5.5 accounting |
U2af38 | 2008-08-15 | Release 5.9 accounting |
U2af38 | 2008-12-18 | 5.12 accounting |
1254 bp (1254 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058537
> LD24048.complete GCCGTGCAAAATACGACCAGACGCTGCTTTTTTCGGTTTCCGAAAATAAT TGAAAATTATCACTAAATAAACAGGCGGCTAACATAATTGCAGTTTGACC GCGTTGCAGAGACAAGCGGGTAGATAAGTTACACATTTTGGCCACAGCAA CACCACAGTAAAGCCGCCAGCATGGCCGAGTACTTGGCATCCATTTTTGG CACGGAAAAGGACAAGGTGAACTGTTCGTTCTACTTCAAGATCGGCGCCT GCCGCCACGGCGACCGGTGCTCTCGCATCCACAACAAACCCACTTTCTCG CAGACGGTGCTTCTCCAAAATCTATACGTGAACCCCCAAAACTCCGCCAA ATCCGCGGATGGCTCCCATCTGGTGGCCAACGTCTCCGACGAGGAGATGC AAGAACACTACGACAATTTTTTCGAGGACGTGTTCGTAGAGTGCGAGGAC AAGTACGGGGAAATCGAGGAGATGAACGTGTGCGACAACCTAGGCGACCA TCTGGTCGGCAATGTGTACATCAAATTCCGTAACGAGGCTGATGCGGAAA AGGCGGCAAACGATTTGAACAACCGGTGGTTCGGTGGTCGACCGGTGTAC TCGGAACTATCGCCGGTGACCGACTTCCGCGAGGCTTGCTGTCGGCAGTA CGAGATGGGCGAATGTACCCGCTCCGGCTTCTGCAACTTCATGCACTTGA AGCCCATCTCGCGTGAGCTGCGAAGGTACCTCTACTCCCGCCGCCGTCGT GCCCGCTCCCGTTCCCGATCCCCTGGACGCCGTCGCGGCTCCCGCAGCAG GTCCCGATCCCCGGGTCGAAGAGGAGGCGGCAGAGGCGACGGTGTCGGCG GAGGAAACTACTTGAACAACGAGCGGGACAACATGCGTGGCAATGATCGC GGAAACGATCGCGATCGCCGCAAAGGTGGTGGCGGAGGAGGCGGTGGTGG TGGTGGACGGTATTAAATATTCTGGACATTTTTTCTGTACGGTGGCAATT GAGAGAGAAAGCAACGGACAAGCAGTAACGCAAAGCATCGTGTATTTTAG TCTCTGCGTTGGTTTTCCACGTTTTTATATCACTTTTGAGTAAACGAGAT GGAAGGAGGAGGAGGAAAATGACGATGGGGAGTTCCACCACCTATGTACA AACCCCCCGCGAAATATTTTACCGAGCGCCCATTAGAATTGTAATTTACT ATACATACATTCATAATAATAAAATTGAGTAATATAAAAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
U2af38-RA | 1379 | U2af38-RA | 28..1262 | 1..1235 | 6175 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4569..4606 | 687..650 | 118 | 78.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 293389..294411 | 216..1235 | 99 | <- | Minus |
chr2L | 294480..294694 | 1..215 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 1..795 | 172..966 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 1..795 | 172..966 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 1..795 | 172..966 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 1..795 | 172..966 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 1..795 | 172..966 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 25..1259 | 1..1235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 25..1259 | 1..1235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 27..1261 | 1..1235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 25..1259 | 1..1235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2af38-RA | 27..1261 | 1..1235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 293353..294372 | 216..1235 | 100 | <- | Minus |
2L | 294441..294655 | 1..215 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 293353..294372 | 216..1235 | 100 | <- | Minus |
2L | 294441..294655 | 1..215 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 293353..294372 | 216..1235 | 100 | <- | Minus |
2L | 294441..294655 | 1..215 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 293353..294372 | 216..1235 | 100 | <- | Minus |
arm_2L | 294441..294655 | 1..215 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 293353..294372 | 216..1235 | 100 | <- | Minus |
2L | 294441..294655 | 1..215 | 100 | Minus |
Translation from 171 to 965
> LD24048.pep MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQN LYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEE MNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVT DFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRRRARSRSRS PGRRRGSRSRSRSPGRRGGGRGDGVGGGNYLNNERDNMRGNDRGNDRDRR KGGGGGGGGGGGRY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24893-PA | 267 | GF24893-PA | 1..254 | 1..262 | 1246 | 93.9 | Plus |
Dana\GF21431-PA | 314 | GF21431-PA | 156..312 | 4..157 | 167 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24659-PA | 266 | GG24659-PA | 1..262 | 1..262 | 1372 | 100 | Plus |
Dere\GG25018-PA | 447 | GG25018-PA | 157..312 | 5..157 | 178 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10217-PA | 273 | GH10217-PA | 1..182 | 1..182 | 993 | 100 | Plus |
Dgri\GH11518-PA | 312 | GH11518-PA | 155..310 | 5..157 | 173 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
U2af38-PB | 264 | CG3582-PB | 1..264 | 1..264 | 1439 | 100 | Plus |
U2af38-PA | 264 | CG3582-PA | 1..264 | 1..264 | 1439 | 100 | Plus |
CG3294-PA | 456 | CG3294-PA | 156..428 | 4..256 | 207 | 22.3 | Plus |
CG3294-PB | 314 | CG3294-PB | 156..312 | 4..157 | 182 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15018-PA | 274 | GI15018-PA | 1..182 | 1..182 | 991 | 100 | Plus |
Dmoj\GI17015-PA | 170 | GI17015-PA | 26..168 | 18..157 | 172 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25824-PA | 309 | GL25824-PA | 1..261 | 1..259 | 1003 | 87.8 | Plus |
Dper\GL14474-PA | 448 | GL14474-PA | 154..330 | 3..176 | 193 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17536-PA | 289 | GA17536-PA | 1..256 | 1..259 | 997 | 87.6 | Plus |
Dpse\GA17206-PA | 448 | GA17206-PA | 154..330 | 3..176 | 198 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16679-PA | 263 | GM16679-PA | 1..263 | 1..264 | 1367 | 99.6 | Plus |
Dsec\GM18489-PA | 447 | GM18489-PA | 156..312 | 4..157 | 180 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22967-PA | 263 | GD22967-PA | 1..263 | 1..264 | 1367 | 99.6 | Plus |
Dsim\GD23299-PA | 492 | GD23299-PA | 156..331 | 4..176 | 191 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17240-PA | 267 | GJ17240-PA | 1..182 | 1..182 | 994 | 100 | Plus |
Dvir\GJ24411-PA | 449 | GJ24411-PA | 157..331 | 5..176 | 196 | 27.9 | Plus |
Translation from 171 to 965
> LD24048.hyp MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQN LYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEE MNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVT DFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRRRARSRSRS PGRRRGSRSRSRSPGRRGGGRGDGVGGGNYLNNERDNMRGNDRGNDRDRR KGGGGGGGGGGGRY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
U2af38-PB | 264 | CG3582-PB | 1..264 | 1..264 | 1439 | 100 | Plus |
U2af38-PA | 264 | CG3582-PA | 1..264 | 1..264 | 1439 | 100 | Plus |
CG3294-PA | 456 | CG3294-PA | 156..428 | 4..256 | 207 | 22.3 | Plus |
CG3294-PB | 314 | CG3294-PB | 156..312 | 4..157 | 182 | 24.1 | Plus |