Clone LD24056 Report

Search the DGRC for LD24056

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:240
Well:56
Vector:pOT2
Associated Gene/Transcriptctp-RA
Protein status:LD24056.pep: gold
Preliminary Size:1300
Sequenced Size:1477

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6998 2001-01-01 Release 2 assignment
ctp 2008-04-29 Release 5.5 accounting
ctp 2008-08-15 Release 5.9 accounting
ctp 2008-12-18 5.12 accounting

Clone Sequence Records

LD24056.complete Sequence

1477 bp (1477 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094798

> LD24056.complete
TTCAGTTGTGTTTCAGTTGTCGAGAAGTCAGGGTGTTTCTACCTTCCATT
TACCGTTCCAGTGTAAAATTCAGGCGACACGCTTAGCGTTACCAAGGAGA
ACCGCTAAAAAGGGCCACTTTTCAAACGGTTAGATTCCAGTGAAGTTGTA
AGCACACAGGGAACCTAAAAAAAAAAAAAACAGCCAAAATGTCTGATCGC
AAGGCCGTGATTAAAAATGCCGACATGAGCGAGGAGATGCAGCAGGATGC
CGTCGATTGTGCGACACAGGCCCTCGAGAAGTACAACATTGAAAAGGACA
TTGCGGCCTACATCAAGAAGGAGTTCGACAAAAAATACAATCCCACATGG
CATTGCATTGTCGGTCGCAACTTTGGATCGTATGTCACACACGAGACGCG
CCACTTTATTTACTTCTATTTGGGCCAGGTGGCTATTTTACTGTTTAAGA
GCGGTTAAAGTATTGTCGAGTCGGATGAAGTGGTGGTGAGGAGGCTGATG
GAGATGCAGCAGCTGCCCCGCCAGCAGCAACAACAGCAGGGGCAGCAGTC
GCATTTCGGAGCATCAGAGGATGAGGATCTAGAGCAGAAACAGCAACAAC
CACAACAATCACAGCAACTACAGAGCCAGCAGCAACAACAACAACAACAA
CAACAACAACAACTACAAAAAGAACAAGAACGAAAACAGCAAACACTACA
ACCACCAGTAGAACATCTCAAGGATGCGGAAATGATGACCGATAGGGCAA
GCGAGAAGCAACAGCAGCAAAAACGATCAGAAGATTCGCAAATACAACTA
ACCAACGATCAAGACGTGGACGATGGGGACGAAGACGAAGACGAGGACGA
GGACGATGAAGATGGCACCATTGTGGAGGACAGCGATGCCACCAGCTGCA
GCAGTTGTCGACGAGCCGAACTGGAGGATAATCAGCAAGAACAACCGCCG
ACATCATCATCTCCCCACAAGGATCGGGAACACGTCACATAGGGCATTCT
CTTTCACAATATGGAGAGAGAGGCTACACACGAGCACACCGTTCTAGATT
GTCTATCGGATGCAAACAACGCCGATTGGTTGGTGGTACAGATTATATAC
AATATATGCTCAGCAATTTAAATTGAACAAGCGTTGATGTTCAATAGGAA
AGCGCTACTAGAACACACAAAATACACTACTAGAAACAGAGGAACTTGTT
TAGAAGCACGAACCAACGATGTTTAGTTTCGAAATCACCATTTCCCGTCC
TAAACTTCTGCATGTTGATGGTATAGTTTAGAATAAGCAATTGGTTACCA
TTTGGATTTGCATTCGCTCCCAATGATTCAAACATCTGTTGAAATATACT
TTTAATATTTTCTTTTGCAAATGTTTTATGTGCTGGAGCTTTGTTTGGAC
TTTTGATTTACATATGAAACCTGCGCAATTAAACAATTGTTAACAAGAAA
AGAACCAAAAAAAAAAAAAAAAAAAAA

LD24056.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
ctp.b 4192 ctp.b 158..1618 1..1461 7305 100 Plus
ctp-RA 2089 ctp-RA 158..1618 1..1461 7305 100 Plus
ctp-RC 2297 ctp-RC 499..1872 88..1461 6870 100 Plus
ctp-RC 2297 ctp-RC 57..144 1..88 440 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4591072..4592242 295..1456 5670 99.1 Plus
chrX 22417052 chrX 4584408..4584617 88..297 1050 100 Plus
chr2L 23010047 chr2L 1344447..1344721 185..459 730 84.4 Plus
chrX 22417052 chrX 4580986..4581073 1..88 440 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4698295..4699461 295..1461 5835 100 Plus
X 23542271 X 4691636..4691845 88..297 1050 100 Plus
2L 23513712 2L 1344612..1344886 185..459 745 84.7 Plus
X 23542271 X 4688230..4688317 1..88 440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4706393..4707559 295..1461 5835 100 Plus
X 23527363 X 4699734..4699943 88..297 1050 100 Plus
2L 23513712 2L 1344612..1344886 185..459 745 84.7 Plus
X 23527363 X 4696328..4696415 1..88 440 100 Plus
Blast to na_te.dros performed 2019-03-16 10:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2533 492..724 365 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6920 502..696 343 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2493 490..705 339 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6929 521..723 328 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..7009 506..776 326 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2540 506..707 322 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6924 506..664 300 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2382..2680 507..805 289 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6811..7079 500..768 282 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6908 603..798 277 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2781..2987 495..707 270 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6948 507..667 253 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2627..2942 500..811 247 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6805 626..711 211 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6893..7207 507..814 198 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2438..2763 500..817 196 59.4 Plus
roo 9092 roo DM_ROO 9092bp 1071..1165 523..620 195 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2891 507..770 189 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6869..7060 507..698 167 58.4 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 696..763 548..477 142 72.2 Minus
roo 9092 roo DM_ROO 9092bp 1087..1146 494..553 138 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2568..2820 479..717 131 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1588 502..550 128 73.5 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 634..705 562..491 126 63.9 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8615..8682 487..553 121 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1565 507..548 120 76.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6560..6845 507..798 118 54.5 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 978..1020 507..546 118 79.1 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7964..7995 522..553 115 84.4 Plus
X-element 4740 X-element ROXELEMENT 4740bp 1733..1782 496..545 115 70 Plus
TART-C 11124 TART-C TARTC 11124bp 9408..9439 522..553 115 84.4 Plus
roo 9092 roo DM_ROO 9092bp 1105..1152 500..547 114 70.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 149..176 516..543 113 89.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9179..9206 516..543 113 89.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2294..2346 746..798 111 72.2 Plus

LD24056.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:41:06 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4580986..4581073 1..88 100 -> Plus
chrX 4584409..4584616 89..296 100 -> Plus
chrX 4591074..4591365 297..588 83 == Plus
chrX 4591479..4591588 693..802 100 == Plus
chrX 4591653..4592242 867..1456 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:19:23 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 1..270 189..458 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:28:36 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 1..270 189..458 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:01:51 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 1..270 189..458 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:02:59 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 1..270 189..458 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:47 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 1..270 189..458 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:19:21 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 8..1463 1..1456 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:28:36 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 8..1463 1..1456 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:01:51 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 28..1483 1..1456 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:00 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 8..1463 1..1456 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:47 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
ctp-RA 28..1483 1..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:06 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
X 4688230..4688317 1..88 100 -> Plus
X 4691637..4691844 89..296 100 -> Plus
X 4698297..4699456 297..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:06 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
X 4688230..4688317 1..88 100 -> Plus
X 4691637..4691844 89..296 100 -> Plus
X 4698297..4699456 297..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:06 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
X 4688230..4688317 1..88 100 -> Plus
X 4691637..4691844 89..296 100 -> Plus
X 4698297..4699456 297..1456 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:01:51 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4582263..4582350 1..88 100 -> Plus
arm_X 4585670..4585877 89..296 100 -> Plus
arm_X 4592330..4593489 297..1456 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:25 Download gff for LD24056.complete
Subject Subject Range Query Range Percent Splice Strand
X 4706395..4707554 297..1456 100   Plus
X 4699735..4699942 89..296 100 -> Plus
X 4696328..4696415 1..88 100 -> Plus

LD24056.pep Sequence

Translation from 188 to 457

> LD24056.pep
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKY
NPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG*

LD24056.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15181-PA 89 GF15181-PA 1..89 1..89 479 98.9 Plus
Dana\GF22273-PA 211 GF22273-PA 1..81 1..81 457 100 Plus
Dana\GF12295-PA 105 GF12295-PA 20..103 6..87 163 40.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18720-PA 89 GG18720-PA 1..89 1..89 480 100 Plus
Dere\GG24601-PA 89 GG24601-PA 1..89 1..89 476 98.9 Plus
Dere\GG24789-PA 89 GG24789-PA 1..89 1..89 476 98.9 Plus
Dere\GG20249-PA 104 GG20249-PA 20..102 7..87 160 42.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11410-PA 89 GH11410-PA 1..89 1..89 480 100 Plus
Dgri\GH24086-PA 296 GH24086-PA 1..66 1..66 335 98.5 Plus
Dgri\GH11409-PA 89 GH11409-PA 1..88 1..88 298 62.5 Plus
Dgri\GH19716-PA 104 GH19716-PA 19..102 6..87 154 36.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
ctp-PE 89 CG6998-PE 1..89 1..89 473 100 Plus
ctp-PC 89 CG6998-PC 1..89 1..89 473 100 Plus
ctp-PA 89 CG6998-PA 1..89 1..89 473 100 Plus
ctp-PB 89 CG6998-PB 1..89 1..89 473 100 Plus
Cdlc2-PC 89 CG5450-PC 1..89 1..89 469 98.9 Plus
Cdlc2-PB 89 CG5450-PB 1..89 1..89 469 98.9 Plus
Cdlc2-PA 89 CG5450-PA 1..89 1..89 469 98.9 Plus
CG8407-PB 104 CG8407-PB 20..102 7..87 167 42.2 Plus
CG8407-PA 104 CG8407-PA 20..102 7..87 167 42.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14563-PA 89 GI14563-PA 1..89 1..89 480 100 Plus
Dmoj\GI14559-PA 89 GI14559-PA 1..89 1..89 477 98.9 Plus
Dmoj\GI14909-PA 332 GI14909-PA 1..66 1..66 322 98.5 Plus
Dmoj\GI20135-PA 104 GI20135-PA 19..102 6..87 145 36.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15652-PA 89 GL15652-PA 1..89 1..89 457 94.4 Plus
Dper\GL13055-PA 53 GL13055-PA 1..53 37..89 290 100 Plus
Dper\GL11080-PA 105 GL11080-PA 21..103 7..87 164 42.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25980-PA 89 GA25980-PA 1..89 1..89 480 100 Plus
Dpse\GA26073-PA 89 GA26073-PA 1..89 1..89 457 94.4 Plus
Dpse\GA21054-PA 105 GA21054-PA 21..103 7..87 164 42.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12359-PA 89 GM12359-PA 1..89 1..89 480 100 Plus
Dsec\GM16816-PA 89 GM16816-PA 1..89 1..89 476 98.9 Plus
Dsec\GM21336-PA 104 GM21336-PA 20..102 7..87 161 42.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23096-PA 89 GD23096-PA 1..89 1..89 476 98.9 Plus
Dsim\GD15399-PA 104 GD15399-PA 20..102 7..87 161 42.2 Plus
Dsim\GD15397-PA 104 GD15397-PA 20..102 7..87 161 42.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17036-PA 89 GJ17036-PA 1..89 1..89 480 100 Plus
Dvir\GJ17025-PA 89 GJ17025-PA 1..89 1..89 476 97.8 Plus
Dvir\GJ18941-PA 310 GJ18941-PA 1..66 1..66 322 98.5 Plus
Dvir\GJ19905-PA 104 GJ19905-PA 19..102 6..87 168 39.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25335-PA 268 GK25335-PA 1..88 1..88 502 100 Plus
Dwil\GK15188-PA 89 GK15188-PA 1..89 1..89 480 100 Plus
Dwil\GK23006-PA 105 GK23006-PA 21..103 7..87 164 42.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ctp-PA 89 GE16358-PA 1..89 1..89 480 100 Plus
Dyak\GE17560-PA 89 GE17560-PA 1..89 1..89 476 98.9 Plus
Dyak\GE12408-PA 104 GE12408-PA 20..102 7..87 160 42.2 Plus

LD24056.hyp Sequence

Translation from 497 to 991

> LD24056.hyp
MEMQQLPRQQQQQQGQQSHFGASEDEDLEQKQQQPQQSQQLQSQQQQQQQ
QQQQQLQKEQERKQQTLQPPVEHLKDAEMMTDRASEKQQQQKRSEDSQIQ
LTNDQDVDDGDEDEDEDEDDEDGTIVEDSDATSCSSCRRAELEDNQQEQP
PTSSSPHKDREHVT*

LD24056.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ncoa6-PC 2265 CG14023-PC 796..902 3..105 174 36.4 Plus
Ncoa6-PD 2266 CG14023-PD 797..903 3..105 174 36.4 Plus
Ncoa6-PF 2467 CG14023-PF 797..903 3..105 174 36.4 Plus
ptip-PA 2294 CG32133-PA 828..904 2..70 170 50.6 Plus
CG44085-PH 756 CG44085-PH 370..471 2..96 165 42.7 Plus
ptip-PA 2294 CG32133-PA 199..305 2..100 155 41.1 Plus
ptip-PA 2294 CG32133-PA 662..829 2..163 154 26.2 Plus
Ncoa6-PC 2265 CG14023-PC 1144..1234 2..97 152 37.6 Plus
Ncoa6-PD 2266 CG14023-PD 1145..1235 2..97 152 37.6 Plus
Ncoa6-PF 2467 CG14023-PF 1145..1235 2..97 152 37.6 Plus
ptip-PA 2294 CG32133-PA 803..903 1..105 148 34.3 Plus
ptip-PA 2294 CG32133-PA 1121..1217 2..100 148 40.4 Plus
ptip-PA 2294 CG32133-PA 1153..1306 1..163 148 29.8 Plus
Ncoa6-PC 2265 CG14023-PC 826..936 1..122 147 35.7 Plus
Ncoa6-PD 2266 CG14023-PD 827..937 1..122 147 35.7 Plus
Ncoa6-PF 2467 CG14023-PF 827..937 1..122 147 35.7 Plus