Clone LD24105 Report

Search the DGRC for LD24105

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:241
Well:5
Vector:pOT2
Associated Gene/TranscriptCG10932-RA
Protein status:LD24105.pep: gold
Preliminary Size:1300
Sequenced Size:1502

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10932 2001-01-01 Release 2 assignment
CG10932 2001-10-10 Blastp of sequenced clone
CG10932 2003-01-01 Sim4 clustering to Release 3
CG10932 2008-04-29 Release 5.5 accounting
CG10932 2008-08-15 Release 5.9 accounting
CG10932 2008-12-18 5.12 accounting

Clone Sequence Records

LD24105.complete Sequence

1502 bp (1502 high quality bases) assembled on 2001-10-10

GenBank Submission: AY089548

> LD24105.complete
TCTGGCGTGATTTCTGATTGGATTCTTGCCATTTACCTGTGTGATTGCTG
TGCTAGTTAATACAAATTAATTAAATTCCAAGATGTCCGCCCGACTGCTG
CAGGCCACGCGTCGCTGGAGCGCCCATCGCAACTACAGCTCCAAAATCGC
CGAAGTTGTGGTGGTTTCGGCAGCCCGCACACCAATTGGCAGCTTCCAAA
GTCAATTGGCCCCACTGACGGCTACCCAATTGGGAGCCCGTGCCATCGAG
GCGGCCATCGAAAAGGCCGGAATTGCGAAGACCGATGTCCAGGAGGTGAT
TATGGGCAATGTGGTATCTGCTGGTCTGGGACAGGCCCCCGCCCGTCAGG
CTGCCATCTTCGCCGGACTGCCCACCAATGTATGCTGCACCACGGTGAAC
AAGGTGTGCTCGTCGGGCATGAAGGCCGTTATGCTGGGCGCCCAATCCCT
GATGCTCGGCTATGCTGATGTGGTCGTTGCCGGCGGTATGGAGTCCATGT
CGAATGTTCCCTACTATCTGAAGAGGGGAGCCACGCCCTATGGCGGCGTC
AATCTCACCGACGGCATTGTTTTCGATGGCCTCTGGGATGTGTACAACAA
GTTCCACATGGGCAACTGTGCCGAAAATACGGCCAAAAAACTGGAGATCA
CACGTCAGCAGCAGGATGACTTTGCCATTGAATCATACAAGAGATCGGCT
GCCGCGTGGGCCAACAAGGTGTTCCAGGACGAGATTGCCCCGGTGAAGAT
TCAGCAGAAGAGGAAGCCGGAGATCGTCATCTCAGAGGATGAGGAGTACA
AGCGGGTGAATTTTGACAAGTTTGGACAGTTGGCCACCGTTTTCCAAAGG
GAAAATGGCACTGTGACAGCCGGAAATGCATCCACCTTGAATGATGGCGG
TGCCGCCGTGGTTTTGATGAGTGCCGAGGCAGCCCAGAAGGCGGGCATTA
AGCCGCTGGCCAGGATTGTGGCCTTCCAGGATGCGGAGACCGATCCCATT
GACTTCCCCATTGCCCCAGCTCTGGCCATTCCCAAATTACTGAAGCGTGC
CGGCGTTCGCAAGGAAGACGTGGCCATGTGGGAGGTCAATGAGGCCTTCT
CCCTGGTCGTTTTGGCCAATATCAAGAAACTGGATGTGGATCCAGCCAAG
GTTAATGTTCATGGAGGTGCCGTGTCAATTGGCCATCCAATCGGCATGTC
CGGAGCCCGTCTGGTGGCCCATCTTTCGCACAGCCTGAAGAAGGGCGAGC
TGGGATGCGCCTCCATTTGCAATGGCGGCGGTGGAGCCTCCTCCATTCTC
ATCGAGAAGCTGTAAAGGTCACCTGGCGGACCTGCTCTCAACCAGAAATG
CATTTACTACTGATCCATCGAGATTATTGTGGAAAGCTCTATGTTTTTTT
TTAAATTGTTAAGTGTCTTGATTGCGCGTGGCCGCATTTAACGAACTATT
GTGATTTGCATAATAAAATTATGAAACAGTCAATAAAAAAAAAAAAAAAA
AA

LD24105.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10932-RA 1486 CG10932-RA 1..1486 1..1486 7430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7779168..7780651 1484..1 7405 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7887267..7888752 1486..1 7430 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7895365..7896850 1486..1 7430 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:40:06 has no hits.

LD24105.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:41:09 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7779168..7780651 1..1484 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:40 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 1..1233 83..1315 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:52:24 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 1..1233 83..1315 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:02:29 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 1..1233 83..1315 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:21:30 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 1..1233 83..1315 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:55 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 1..1233 83..1315 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:37:21 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 1..1484 1..1484 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:52:24 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 1..1484 1..1484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:02:29 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 34..1517 1..1484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:21:30 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 1..1484 1..1484 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:55 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
CG10932-RA 34..1517 1..1484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:09 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
X 7887269..7888752 1..1484 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:09 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
X 7887269..7888752 1..1484 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:09 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
X 7887269..7888752 1..1484 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:02:29 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7781302..7782785 1..1484 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:58:19 Download gff for LD24105.complete
Subject Subject Range Query Range Percent Splice Strand
X 7895367..7896850 1..1484 100   Minus

LD24105.pep Sequence

Translation from 82 to 1314

> LD24105.pep
MSARLLQATRRWSAHRNYSSKIAEVVVVSAARTPIGSFQSQLAPLTATQL
GARAIEAAIEKAGIAKTDVQEVIMGNVVSAGLGQAPARQAAIFAGLPTNV
CCTTVNKVCSSGMKAVMLGAQSLMLGYADVVVAGGMESMSNVPYYLKRGA
TPYGGVNLTDGIVFDGLWDVYNKFHMGNCAENTAKKLEITRQQQDDFAIE
SYKRSAAAWANKVFQDEIAPVKIQQKRKPEIVISEDEEYKRVNFDKFGQL
ATVFQRENGTVTAGNASTLNDGGAAVVLMSAEAAQKAGIKPLARIVAFQD
AETDPIDFPIAPALAIPKLLKRAGVRKEDVAMWEVNEAFSLVVLANIKKL
DVDPAKVNVHGGAVSIGHPIGMSGARLVAHLSHSLKKGELGCASICNGGG
GASSILIEKL*

LD24105.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21242-PA 414 GF21242-PA 1..414 1..410 2014 91.1 Plus
Dana\GF24451-PA 392 GF24451-PA 1..391 22..410 723 41.2 Plus
Dana\GF15724-PA 398 GF15724-PA 8..396 25..408 603 36.6 Plus
Dana\GF12060-PA 470 GF12060-PA 45..463 25..409 442 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17603-PA 410 GG17603-PA 1..410 1..410 2157 99 Plus
Dere\GG14778-PA 392 GG14778-PA 1..391 22..410 772 42.5 Plus
Dere\GG10063-PA 398 GG10063-PA 8..396 25..408 594 35.8 Plus
Dere\GG19986-PA 469 GG19986-PA 44..462 25..409 442 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17897-PA 409 GH17897-PA 1..409 5..410 1889 85.1 Plus
Dgri\GH15449-PA 392 GH15449-PA 1..391 22..410 731 39.5 Plus
Dgri\GH11301-PA 398 GH11301-PA 8..398 25..410 593 35.4 Plus
Dgri\GH20195-PA 405 GH20195-PA 4..398 49..409 426 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10932-PB 410 CG10932-PB 1..410 1..410 2068 100 Plus
CG10932-PA 410 CG10932-PA 1..410 1..410 2068 100 Plus
CG9149-PA 392 CG9149-PA 1..391 22..410 754 42.1 Plus
yip2-PA 398 CG4600-PA 8..396 25..408 613 35.5 Plus
Thiolase-PA 469 CG4581-PA 44..462 25..409 441 29.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15420-PA 408 GI15420-PA 1..408 5..410 1911 86.3 Plus
Dmoj\GI13050-PA 392 GI13050-PA 1..391 22..410 782 43.4 Plus
Dmoj\GI17721-PA 398 GI17721-PA 8..396 25..408 599 36.1 Plus
Dmoj\GI20722-PA 469 GI20722-PA 44..462 25..409 454 29.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14584-PA 412 GL14584-PA 1..412 1..410 1918 85.9 Plus
Dper\GL16175-PA 392 GL16175-PA 1..391 22..410 770 42 Plus
Dper\GL18942-PA 398 GL18942-PA 8..396 25..408 589 36.6 Plus
Dper\GL10924-PA 471 GL10924-PA 46..464 25..409 455 30.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10651-PA 412 GA10651-PA 1..412 1..410 1921 86.2 Plus
Dpse\GA21576-PA 392 GA21576-PA 1..391 22..410 770 42.2 Plus
Dpse\GA18290-PA 398 GA18290-PA 8..396 25..408 589 36.6 Plus
Dpse\GA18273-PA 471 GA18273-PA 46..464 25..409 455 30.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11967-PA 410 GM11967-PA 1..410 1..410 2146 98.5 Plus
Dsec\GM14397-PA 392 GM14397-PA 1..391 22..410 762 42 Plus
Dsec\GM17755-PA 398 GM17755-PA 8..396 25..408 591 35.5 Plus
Dsec\GM12955-PA 311 GM12955-PA 1..299 22..320 556 41.2 Plus
Dsec\GM15500-PA 469 GM15500-PA 44..462 25..409 444 29.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24579-PA 410 GD24579-PA 1..410 1..410 2157 99.3 Plus
Dsim\GD13606-PA 392 GD13606-PA 1..391 22..410 766 42.2 Plus
Dsim\GD23636-PA 397 GD23636-PA 38..395 56..408 567 35.8 Plus
Dsim\GD25003-PA 469 GD25003-PA 44..462 25..409 444 29.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16378-PA 408 GJ16378-PA 1..408 5..410 1887 85 Plus
Dvir\GJ12146-PA 392 GJ12146-PA 1..391 22..410 775 42 Plus
Dvir\GJ17549-PA 398 GJ17549-PA 8..396 25..408 589 35.8 Plus
Dvir\GJ20459-PA 443 GJ20459-PA 18..436 25..409 477 30.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10115-PA 413 GK10115-PA 1..413 1..410 1920 86.4 Plus
Dwil\GK20386-PA 392 GK20386-PA 1..391 22..410 786 43.1 Plus
Dwil\GK18280-PA 398 GK18280-PA 8..396 25..408 617 36.3 Plus
Dwil\GK15863-PA 473 GK15863-PA 48..466 25..409 459 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17503-PA 410 GE17503-PA 1..410 1..410 2150 98.8 Plus
Dyak\GE21141-PA 392 GE21141-PA 1..391 22..410 773 42.7 Plus
Dyak\yip2-PA 398 GE18877-PA 8..396 25..408 601 36.1 Plus
Dyak\GE11519-PA 469 GE11519-PA 12..462 2..409 448 28.9 Plus

LD24105.hyp Sequence

Translation from 82 to 1314

> LD24105.hyp
MSARLLQATRRWSAHRNYSSKIAEVVVVSAARTPIGSFQSQLAPLTATQL
GARAIEAAIEKAGIAKTDVQEVIMGNVVSAGLGQAPARQAAIFAGLPTNV
CCTTVNKVCSSGMKAVMLGAQSLMLGYADVVVAGGMESMSNVPYYLKRGA
TPYGGVNLTDGIVFDGLWDVYNKFHMGNCAENTAKKLEITRQQQDDFAIE
SYKRSAAAWANKVFQDEIAPVKIQQKRKPEIVISEDEEYKRVNFDKFGQL
ATVFQRENGTVTAGNASTLNDGGAAVVLMSAEAAQKAGIKPLARIVAFQD
AETDPIDFPIAPALAIPKLLKRAGVRKEDVAMWEVNEAFSLVVLANIKKL
DVDPAKVNVHGGAVSIGHPIGMSGARLVAHLSHSLKKGELGCASICNGGG
GASSILIEKL*

LD24105.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10932-PB 410 CG10932-PB 1..410 1..410 2068 100 Plus
CG10932-PA 410 CG10932-PA 1..410 1..410 2068 100 Plus
CG9149-PA 392 CG9149-PA 1..391 22..410 754 42.1 Plus
yip2-PA 398 CG4600-PA 8..396 25..408 613 35.5 Plus
Thiolase-PA 469 CG4581-PA 44..462 25..409 441 29.1 Plus