Clone LD24119 Report

Search the DGRC for LD24119

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:241
Well:19
Vector:pOT2
Associated Gene/TranscriptCG3735-RA
Protein status:LD24119.pep: gold
Sequenced Size:2202

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3735 2007-09-25 DGC5 pick
CG3735 2008-04-29 Release 5.5 accounting
CG3735 2008-04-29 Picked prior to 5.5
CG3735 2008-08-15 Release 5.9 accounting
CG3735 2008-12-18 5.12 accounting

Clone Sequence Records

LD24119.complete Sequence

2202 bp assembled on 2007-12-04

GenBank Submission: BT031327

> LD24119.complete
TTTAAAATGAAACAAAAACACTCGAAGAACAGGGCGAAGCCCTACAAGAA
ACCAACGCCCGCCCGGCGAAATGAGAGATTCTCGAAGAACTACAGTTTCA
TCCAGAGGAGCAAGCAAATGGAGGAGTCCCACCGCAGGGAACGAATGCCC
ACAGCACCGAAACAGGAATATGAGCCCGTGGCGGAGCTGTTGCCGGAGAT
CCAGGATGATGTGGACGAGACTGAGTTCTATAAAAAGCTCATAACTGGTG
TTAATAACATACCCACAAGTGACATCCTACGCTCAAAAGCAGAGAAGGAA
GAGGATCACGTTATTCCCGTGCCCAGGAAGATCAAACCCAAAAAGGAAAA
GCGTTCCGAGCAGTTAGGTGTCGACTTGGAAATATACAATTCGTTTTCGA
AACGCTTCGATTTTGAGCTATCTACGGATAATATCAACGATTTGATTGCG
AGAAAGGATGTTAAAACAATCAAGAGGAACTGGTCCGCTCTGGGGAATGT
AAGGTTCGATATACCACGACTGACTGAGGACTTCAAGGAGCCCGACTGCA
GCGAGCCCAAGGACATTGCAAGCACGGAAGATCTGCAAAAGTTGGAGGTG
AAGGCGTCCATTTGTGCAAACGCCAAACTGCCACTCACTGCCCTGCAGTC
CCAGCTCTTCTACATCGCCAATAACTACCAAGATATATACTATCCCCATC
GAACTCATGGCAATGCCGAGGATATTCGCTATGTATACTGCCTGCACGCC
CTGAACCACATGCTGAAAGTCAGATCACTGATATTGCGCAACAACGAAAA
GGTTTCGGCTTTGGCCAAGTCACAAAAAATGTCGCCCAACGAAATCTCTA
TACCAGAGAGCTTCAGGGACCAAGGGCTTAAGCGGATGAAGGTCGTTTTT
GTAGTGCCCTTCAGGGAATCGGCTCTAAGGATTGTAAATATACTCGGAGA
TCTACTCTTTGGCAGTCAAGATGATCAGGCCAGGAAAACCTCGATCGCGA
ACTATGAACGCTTCCTGGGAGATTACTCCGGGAATACGATTTACTTCCCC
AAAACCAACCCAAAGCCAATGGATTATGAGCAAACATTCAGTGGCAACAC
GGATGACAACTTCAAACTAGGTATTCGTTTTACAAAGAAAACCATGTCCC
TATTCTCCGATATGAACGCATCGGACATGTTGATCGCGTCTCCCTTGGGA
CTGAGAATGCTGGTTACGGACAAGGAGAGCGATTTTGACTTTTTGAACTC
CATTGAACTGCTGATAATCGACCAAGCCGAATTGTTCCTGGCGCAGAACT
GGGAGAACCTGCTGCACTCCCTGGACCACCTGCACCTGCAGCCGCAGAAG
CTGCCCGATACGAATTGCCAGAGGGTACGAACGTGGTGCCTGAGTGGAGC
GTCAAGTTTCTACCGCCAAACCCTGTTCTTCTCGTCCCACGAGCTGCCCG
AGTTCCGGGCAGTGTTCAACAGCAAGTGCAACAACTACCAGGGAAAGGTG
CGAGACTCGAACCTCGTCGAGCACGGAGACATCCGGAACGTTCTGACTCC
AATACATCAGGTTTTCCGCCTAATCAATTGCTCCAGTGTGGAGACGACCT
TCGACGATCGGTTCCAGTACTTCGTCAAGAATATTATGCCCCAATTCAGT
AAGCCCGGTTTCTCGCACTGTATGCTATACGTGCCCAGCTACTTTGACTA
CGTACGGATACGCAACCATTTCAAGACCGAAATGGTCAGTTTTGTGCAGA
TAAATGAGTACACCAAGAAAGAAAAGATTTCCCGGGCGAGAGATATATTC
TTCCACAGCGGGGCATCTGTTCTGTTGTACTCGGAAAGAGCGCACTTCTT
CCGGCGCACGCGGATTAAGGGCATCCGGAACTTGATCATGTACCAGCCGC
CCAACTTTCCGCACTTCTATTCCGAGATCATCAATCTGATGCTGAAGACA
AATCAAAATCCGCGCGATGGATTTGGGGACGAAATGTCCGTCAGTATCCT
GTACACAAAGTACGATCTGCTAAGCTTGAGTAACATTGTGGGCAGTGAGA
ATGCTGCGAAATTGACTTCTGGTCAAAAGGATTCCTACCTTTTCTCCACC
AAAACGTAAATGCTTACACGAGAGCTGACTTTGAAATATGTACATATTTA
GTTGTCAATTAGAATATACTAAATGTTAACGCAAAAAAAAAAAAAAAAAA
AA

LD24119.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3735-RA 2824 CG3735-RA 204..2387 1..2184 10920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19823455..19824664 2182..973 5900 99.2 Minus
chr2R 21145070 chr2R 19824719..19825423 973..269 3420 99 Minus
chr2R 21145070 chr2R 19825479..19825748 270..1 1305 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23937393..23938604 2184..973 6060 100 Minus
2R 25286936 2R 23938659..23939363 973..269 3525 100 Minus
2R 25286936 2R 23939419..23939688 270..1 1350 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23938592..23939803 2184..973 6060 100 Minus
2R 25260384 2R 23939858..23940562 973..269 3525 100 Minus
2R 25260384 2R 23940618..23940887 270..1 1350 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:10:05 has no hits.

LD24119.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:11:21 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19823455..19824663 974..2182 99 <- Minus
chr2R 19824719..19825423 269..973 99 <- Minus
chr2R 19825481..19825748 1..268 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:42 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 1..2103 7..2109 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:04:30 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 1..2103 7..2109 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:48:20 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 1..2103 7..2109 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:50:48 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 1..2103 7..2109 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:56 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 1..2103 7..2109 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:56:24 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 64..2245 1..2182 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:04:30 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 64..2245 1..2182 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:48:20 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 67..2248 1..2182 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:50:48 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 64..2245 1..2182 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:56 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
CG3735-RA 67..2248 1..2182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:11:21 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23937395..23938603 974..2182 100 <- Minus
2R 23938659..23939363 269..973 100 <- Minus
2R 23939421..23939688 1..268 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:11:21 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23937395..23938603 974..2182 100 <- Minus
2R 23938659..23939363 269..973 100 <- Minus
2R 23939421..23939688 1..268 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:11:21 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23937395..23938603 974..2182 100 <- Minus
2R 23938659..23939363 269..973 100 <- Minus
2R 23939421..23939688 1..268 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:48:20 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19824918..19826126 974..2182 100 <- Minus
arm_2R 19826182..19826886 269..973 100 <- Minus
arm_2R 19826944..19827211 1..268 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:56:35 Download gff for LD24119.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23940638..23940905 1..268 100   Minus
2R 23938612..23939820 974..2182 100 <- Minus
2R 23939876..23940580 269..973 100 <- Minus

LD24119.hyp Sequence

Translation from 0 to 2108

> LD24119.hyp
FKMKQKHSKNRAKPYKKPTPARRNERFSKNYSFIQRSKQMEESHRRERMP
TAPKQEYEPVAELLPEIQDDVDETEFYKKLITGVNNIPTSDILRSKAEKE
EDHVIPVPRKIKPKKEKRSEQLGVDLEIYNSFSKRFDFELSTDNINDLIA
RKDVKTIKRNWSALGNVRFDIPRLTEDFKEPDCSEPKDIASTEDLQKLEV
KASICANAKLPLTALQSQLFYIANNYQDIYYPHRTHGNAEDIRYVYCLHA
LNHMLKVRSLILRNNEKVSALAKSQKMSPNEISIPESFRDQGLKRMKVVF
VVPFRESALRIVNILGDLLFGSQDDQARKTSIANYERFLGDYSGNTIYFP
KTNPKPMDYEQTFSGNTDDNFKLGIRFTKKTMSLFSDMNASDMLIASPLG
LRMLVTDKESDFDFLNSIELLIIDQAELFLAQNWENLLHSLDHLHLQPQK
LPDTNCQRVRTWCLSGASSFYRQTLFFSSHELPEFRAVFNSKCNNYQGKV
RDSNLVEHGDIRNVLTPIHQVFRLINCSSVETTFDDRFQYFVKNIMPQFS
KPGFSHCMLYVPSYFDYVRIRNHFKTEMVSFVQINEYTKKEKISRARDIF
FHSGASVLLYSERAHFFRRTRIKGIRNLIMYQPPNFPHFYSEIINLMLKT
NQNPRDGFGDEMSVSILYTKYDLLSLSNIVGSENAAKLTSGQKDSYLFST
KT*

LD24119.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3735-PB 700 CG3735-PB 1..700 3..702 3651 100 Plus
CG3735-PA 700 CG3735-PA 1..700 3..702 3651 100 Plus

LD24119.pep Sequence

Translation from 6 to 2108

> LD24119.pep
MKQKHSKNRAKPYKKPTPARRNERFSKNYSFIQRSKQMEESHRRERMPTA
PKQEYEPVAELLPEIQDDVDETEFYKKLITGVNNIPTSDILRSKAEKEED
HVIPVPRKIKPKKEKRSEQLGVDLEIYNSFSKRFDFELSTDNINDLIARK
DVKTIKRNWSALGNVRFDIPRLTEDFKEPDCSEPKDIASTEDLQKLEVKA
SICANAKLPLTALQSQLFYIANNYQDIYYPHRTHGNAEDIRYVYCLHALN
HMLKVRSLILRNNEKVSALAKSQKMSPNEISIPESFRDQGLKRMKVVFVV
PFRESALRIVNILGDLLFGSQDDQARKTSIANYERFLGDYSGNTIYFPKT
NPKPMDYEQTFSGNTDDNFKLGIRFTKKTMSLFSDMNASDMLIASPLGLR
MLVTDKESDFDFLNSIELLIIDQAELFLAQNWENLLHSLDHLHLQPQKLP
DTNCQRVRTWCLSGASSFYRQTLFFSSHELPEFRAVFNSKCNNYQGKVRD
SNLVEHGDIRNVLTPIHQVFRLINCSSVETTFDDRFQYFVKNIMPQFSKP
GFSHCMLYVPSYFDYVRIRNHFKTEMVSFVQINEYTKKEKISRARDIFFH
SGASVLLYSERAHFFRRTRIKGIRNLIMYQPPNFPHFYSEIINLMLKTNQ
NPRDGFGDEMSVSILYTKYDLLSLSNIVGSENAAKLTSGQKDSYLFSTKT
*

LD24119.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12052-PA 567 GF12052-PA 1..565 1..566 2481 80.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19977-PA 700 GG19977-PA 1..700 1..700 3522 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21695-PA 657 GH21695-PA 1..656 38..699 2183 61.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3735-PB 700 CG3735-PB 1..700 1..700 3651 100 Plus
CG3735-PA 700 CG3735-PA 1..700 1..700 3651 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18850-PA 693 GI18850-PA 1..692 1..699 2129 57.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10915-PA 697 GL10915-PA 1..696 1..700 2876 77.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15490-PA 700 GM15490-PA 1..700 1..700 3649 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24992-PA 700 GD24992-PA 1..700 1..700 3633 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21883-PA 678 GJ21883-PA 14..677 17..697 2181 58.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15852-PA 718 GK15852-PA 4..714 2..698 2640 68.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11510-PA 700 GE11510-PA 1..700 1..700 3495 93.6 Plus