Clone LD24213 Report

Search the DGRC for LD24213

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:242
Well:13
Vector:pOT2
Associated Gene/TranscriptTfIIA-L-RA
Protein status:LD24213.pep: gold
Preliminary Size:1745
Sequenced Size:1581

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5930 2001-01-01 Release 2 assignment
CG5930 2001-10-10 Blastp of sequenced clone
CG5930 2003-01-01 Sim4 clustering to Release 3
TfIIA-L 2008-04-29 Release 5.5 accounting
TfIIA-L 2008-08-15 Release 5.9 accounting
TfIIA-L 2008-12-18 5.12 accounting

Clone Sequence Records

LD24213.complete Sequence

1581 bp (1581 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061325

> LD24213.complete
AGGTGGCCACACTGCTGACACCGTCACGAACGCATCGCTATCGCTAATTC
TTCGCTTCGCCCATTTATAATTCAGCAAATACGTCAATTAGCCCCACCAG
CGAACGGAAAAGCCTCAAGCTGGCGGAGAAAAAGGTCCAAATGGCGCTAT
GCCAGACATCGGTGCTGAAGGTGTACCATGCCGTGATCGAGGACGTCATC
ACAAATGTGCGGGACGCGTTCCTGGACGAGGGCGTCGACGAACAGGTGCT
GCAGGAGATGAAGCAGGTCTGGCGCAACAAGTTGCTTGCTAGCAAGGCCG
TCGAGCTGAGCCCGGACTCCGGCGATGGCTCCCATCCGCCACCCATCGTG
GCCAACAATCCAAAGAGCCACAAGGCAGCGAATGCCAAGGCCAAGAAGGC
CGCCGCCGCAACCGCGGTCACATCACACCAACATATCGGCGGCAACAGCT
CCATGTCCTCGCTGGTGGGGCTTAAGTCGTCCGCTGGAATGGCCGCCGGC
AGCGGCATAAGGAACGGGCTGGTGCCCATCAAGCAGGAAGTCAACTCACA
GAATCCACCGCCACTGCATCCTACCTCGGCTGCAAGCATGATGCAGAAAC
AGCAGCAGGCGGCGAGCAGTGGACAGGGTTCCATTCCAATTGTGGCCACG
CTGGACCCCAATCGCATTATGCCTGTTAACATCACGCTGCCATCGCCAGC
CGGCTCTGCCAGTTCGGAATCTCGAGTGCTCACCATACAAGTGCCTGCCT
CCGCGCTGCAGGAGAATCAGTTGACCCAAATTCTGACGGCCCACCTGATT
TCATCCATCATGTCCTTGCCCACCACGTTGGCCTCGTCTGTGCTTCAGCA
GCACGTAAACGCAGCGCTAAGCAGCGCCAATCACCAGAAAACTCTTGCCG
CCGCCAAGCAATTGGACGGTGCCCTGGACTCCTCCGATGAGGATGAAAGC
GAGGAGAGCGACGACAACATCGACAACGATGACGACGATGACCTAGACAA
GGACGATGACGAGGATGCGGAGCACGAGGATGCTGCCGAGGAGGAGCCGC
TCAACAGCGAAGACGATGTCACCGACGAAGACTCTGCCGAAATGTTTGAC
ACAGATAACGTGATTGTTTGTCAGTACGATAAGATCACCAGGTCGCGAAA
CAAATGGAAATTCTATCTCAAAGATGGCATCATGAACATGCGGGGCAAGG
ACTACGTGTTCCAGAAATCGAATGGCGACGCCGAGTGGTAATGGATGGCA
GTTGAGCGAACAGCGGCGGCAGTGTGAATATATATATTAACAAAAGACAT
CAAACAAAAAGCCTCATCGAATGCGCCTTCAGCCCTGGACGACAATGGCT
AACCAGACCGGACTCTGCATCACTGGGCAACATGACCAAGCAACACCGTC
TGCACAGAAAGCAACGTACTCGGGCCGACACTGTATCTTATTTTAGTTCC
ATCTGTTTTGTATTACGATAGCTTAAGGGTGTGTTGCAACCAACCATCTC
GATTAAATGTATTAGAGTGCCGCATAACTTTTGTGTCAATAAACAAAAAC
ATTTGTGAAAGTTAAAAAAAAAAAAAAAAAA

LD24213.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RA 1688 TfIIA-L-RA 115..1678 1..1564 7820 100 Plus
TfIIA-L.a 1514 TfIIA-L.a 33..1261 1..1237 6040 99.3 Plus
TfIIA-L-RB 1724 TfIIA-L-RB 520..1712 372..1564 5965 100 Plus
TfIIA-L-RB 1724 TfIIA-L-RB 158..522 1..365 1825 100 Plus
TfIIA-L.a 1514 TfIIA-L.a 1261..1514 1311..1564 1270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23078962..23079393 1132..1563 2130 99.5 Plus
chr3R 27901430 chr3R 23078018..23078325 373..680 1525 99.7 Plus
chr3R 27901430 chr3R 23078656..23078900 889..1133 1225 100 Plus
chr3R 27901430 chr3R 23078386..23078593 681..888 1040 100 Plus
chr3R 27901430 chr3R 23077457..23077658 164..365 1010 100 Plus
chr3R 27901430 chr3R 23076392..23076559 1..168 825 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27256032..27256464 1132..1564 2165 100 Plus
3R 32079331 3R 27255088..27255395 373..680 1540 100 Plus
3R 32079331 3R 27255726..27255970 889..1133 1225 100 Plus
3R 32079331 3R 27255456..27255663 681..888 1040 100 Plus
3R 32079331 3R 27254527..27254728 164..365 1010 100 Plus
3R 32079331 3R 27253462..27253629 1..168 825 99.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26996863..26997295 1132..1564 2165 100 Plus
3R 31820162 3R 26995919..26996226 373..680 1540 100 Plus
3R 31820162 3R 26996557..26996801 889..1133 1225 100 Plus
3R 31820162 3R 26996287..26996494 681..888 1040 100 Plus
3R 31820162 3R 26995358..26995559 164..365 1010 100 Plus
3R 31820162 3R 26994293..26994460 1..168 825 99.4 Plus
Blast to na_te.dros performed 2019-03-16 09:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 556..611 921..979 135 72.9 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5723..5805 925..1010 116 62.8 Plus

LD24213.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:45:29 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23076392..23076555 1..164 100 -> Plus
chr3R 23077458..23077658 165..367 99 -> Plus
chr3R 23078014..23078325 368..680 98 -> Plus
chr3R 23078386..23078593 681..888 100 -> Plus
chr3R 23078656..23078701 889..934 100 == Plus
chr3R 23078850..23078900 1083..1133 100 -> Plus
chr3R 23078964..23079393 1134..1563 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:49 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 1..1101 141..1241 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:37 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 1..1101 141..1241 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:05:07 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 1..1101 141..1241 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:30 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 1..1101 141..1241 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:19 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 1..1101 141..1241 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:58 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 33..1595 1..1563 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:37 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 33..1595 1..1563 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:05:07 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 33..1595 1..1563 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:31 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 33..1595 1..1563 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:19 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 33..1595 1..1563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:29 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27253462..27253625 1..164 100 -> Plus
3R 27254528..27254728 165..367 99 -> Plus
3R 27255084..27255395 368..680 98 -> Plus
3R 27255456..27255663 681..888 100 -> Plus
3R 27255726..27255970 889..1133 100 -> Plus
3R 27256034..27256463 1134..1563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:29 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27253462..27253625 1..164 100 -> Plus
3R 27254528..27254728 165..367 99 -> Plus
3R 27255084..27255395 368..680 98 -> Plus
3R 27255456..27255663 681..888 100 -> Plus
3R 27255726..27255970 889..1133 100 -> Plus
3R 27256034..27256463 1134..1563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:29 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27253462..27253625 1..164 100 -> Plus
3R 27254528..27254728 165..367 99 -> Plus
3R 27255084..27255395 368..680 98 -> Plus
3R 27255456..27255663 681..888 100 -> Plus
3R 27255726..27255970 889..1133 100 -> Plus
3R 27256034..27256463 1134..1563 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:05:07 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23080250..23080450 165..367 99 -> Plus
arm_3R 23079184..23079347 1..164 100 -> Plus
arm_3R 23080806..23081117 368..680 98 -> Plus
arm_3R 23081178..23081385 681..888 100 -> Plus
arm_3R 23081448..23081692 889..1133 100 -> Plus
arm_3R 23081756..23082185 1134..1563 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:23 Download gff for LD24213.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26995915..26996226 368..680 98 -> Plus
3R 26996287..26996494 681..888 100 -> Plus
3R 26996557..26996801 889..1133 100 -> Plus
3R 26996865..26997294 1134..1563 100   Plus
3R 26994293..26994456 1..164 100 -> Plus
3R 26995359..26995559 165..367 99 -> Plus

LD24213.pep Sequence

Translation from 140 to 1240

> LD24213.pep
MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA
SKAVELSPDSGDGSHPPPIVANNPKSHKAANAKAKKAAAATAVTSHQHIG
GNSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASM
MQKQQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQ
VPASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQK
TLAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAE
EEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNM
RGKDYVFQKSNGDAEW*

LD24213.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16279-PA 364 GF16279-PA 1..364 1..366 1340 86.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11539-PA 366 GG11539-PA 1..366 1..366 1526 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19494-PA 369 GH19494-PA 1..369 1..366 1174 80.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-PA 366 CG5930-PA 1..366 1..366 1855 100 Plus
TfIIA-L-PB 363 CG5930-PB 1..363 1..366 1824 99.2 Plus
TfIIA-L-PC 324 CG5930-PC 1..324 40..366 1630 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22255-PA 381 GI22255-PA 1..381 1..366 1174 76.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24482-PA 177 GL24482-PA 1..177 1..178 502 61.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19238-PB 359 GA19238-PB 1..359 1..366 1274 84.2 Plus
Dpse\GA19238-PA 356 GA19238-PA 1..356 1..366 1236 80.9 Plus
Dpse\GA19238-PC 317 GA19238-PC 1..317 40..366 1027 78.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10381-PA 366 GM10381-PA 1..366 1..366 1903 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21332-PA 115 GD21332-PA 6..115 257..366 564 98.2 Plus
Dsim\GD15189-PA 81 GD15189-PA 1..75 1..75 404 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24046-PA 379 GJ24046-PA 1..379 1..366 1142 79.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22574-PA 379 GK22574-PA 1..379 1..366 1300 82.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23726-PA 366 GE23726-PA 1..366 1..366 1543 95.1 Plus

LD24213.hyp Sequence

Translation from 140 to 1240

> LD24213.hyp
MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA
SKAVELSPDSGDGSHPPPIVANNPKFQAANAKAKKAAAATAVTSHQHIGG
NSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASMM
QKQQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQV
PASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQKT
LAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAEE
EPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMR
GKDYVFQKSNGDAEW*

LD24213.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-PA 366 CG5930-PA 1..366 1..365 1826 99.2 Plus
TfIIA-L-PB 363 CG5930-PB 1..363 1..365 1825 99.5 Plus
TfIIA-L-PC 324 CG5930-PC 1..324 40..365 1631 99.4 Plus