BDGP Sequence Production Resources |
Search the DGRC for LD24213
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 242 |
Well: | 13 |
Vector: | pOT2 |
Associated Gene/Transcript | TfIIA-L-RA |
Protein status: | LD24213.pep: gold |
Preliminary Size: | 1745 |
Sequenced Size: | 1581 |
Gene | Date | Evidence |
---|---|---|
CG5930 | 2001-01-01 | Release 2 assignment |
CG5930 | 2001-10-10 | Blastp of sequenced clone |
CG5930 | 2003-01-01 | Sim4 clustering to Release 3 |
TfIIA-L | 2008-04-29 | Release 5.5 accounting |
TfIIA-L | 2008-08-15 | Release 5.9 accounting |
TfIIA-L | 2008-12-18 | 5.12 accounting |
1581 bp (1581 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061325
> LD24213.complete AGGTGGCCACACTGCTGACACCGTCACGAACGCATCGCTATCGCTAATTC TTCGCTTCGCCCATTTATAATTCAGCAAATACGTCAATTAGCCCCACCAG CGAACGGAAAAGCCTCAAGCTGGCGGAGAAAAAGGTCCAAATGGCGCTAT GCCAGACATCGGTGCTGAAGGTGTACCATGCCGTGATCGAGGACGTCATC ACAAATGTGCGGGACGCGTTCCTGGACGAGGGCGTCGACGAACAGGTGCT GCAGGAGATGAAGCAGGTCTGGCGCAACAAGTTGCTTGCTAGCAAGGCCG TCGAGCTGAGCCCGGACTCCGGCGATGGCTCCCATCCGCCACCCATCGTG GCCAACAATCCAAAGAGCCACAAGGCAGCGAATGCCAAGGCCAAGAAGGC CGCCGCCGCAACCGCGGTCACATCACACCAACATATCGGCGGCAACAGCT CCATGTCCTCGCTGGTGGGGCTTAAGTCGTCCGCTGGAATGGCCGCCGGC AGCGGCATAAGGAACGGGCTGGTGCCCATCAAGCAGGAAGTCAACTCACA GAATCCACCGCCACTGCATCCTACCTCGGCTGCAAGCATGATGCAGAAAC AGCAGCAGGCGGCGAGCAGTGGACAGGGTTCCATTCCAATTGTGGCCACG CTGGACCCCAATCGCATTATGCCTGTTAACATCACGCTGCCATCGCCAGC CGGCTCTGCCAGTTCGGAATCTCGAGTGCTCACCATACAAGTGCCTGCCT CCGCGCTGCAGGAGAATCAGTTGACCCAAATTCTGACGGCCCACCTGATT TCATCCATCATGTCCTTGCCCACCACGTTGGCCTCGTCTGTGCTTCAGCA GCACGTAAACGCAGCGCTAAGCAGCGCCAATCACCAGAAAACTCTTGCCG CCGCCAAGCAATTGGACGGTGCCCTGGACTCCTCCGATGAGGATGAAAGC GAGGAGAGCGACGACAACATCGACAACGATGACGACGATGACCTAGACAA GGACGATGACGAGGATGCGGAGCACGAGGATGCTGCCGAGGAGGAGCCGC TCAACAGCGAAGACGATGTCACCGACGAAGACTCTGCCGAAATGTTTGAC ACAGATAACGTGATTGTTTGTCAGTACGATAAGATCACCAGGTCGCGAAA CAAATGGAAATTCTATCTCAAAGATGGCATCATGAACATGCGGGGCAAGG ACTACGTGTTCCAGAAATCGAATGGCGACGCCGAGTGGTAATGGATGGCA GTTGAGCGAACAGCGGCGGCAGTGTGAATATATATATTAACAAAAGACAT CAAACAAAAAGCCTCATCGAATGCGCCTTCAGCCCTGGACGACAATGGCT AACCAGACCGGACTCTGCATCACTGGGCAACATGACCAAGCAACACCGTC TGCACAGAAAGCAACGTACTCGGGCCGACACTGTATCTTATTTTAGTTCC ATCTGTTTTGTATTACGATAGCTTAAGGGTGTGTTGCAACCAACCATCTC GATTAAATGTATTAGAGTGCCGCATAACTTTTGTGTCAATAAACAAAAAC ATTTGTGAAAGTTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIA-L-RA | 1688 | TfIIA-L-RA | 115..1678 | 1..1564 | 7820 | 100 | Plus |
TfIIA-L.a | 1514 | TfIIA-L.a | 33..1261 | 1..1237 | 6040 | 99.3 | Plus |
TfIIA-L-RB | 1724 | TfIIA-L-RB | 520..1712 | 372..1564 | 5965 | 100 | Plus |
TfIIA-L-RB | 1724 | TfIIA-L-RB | 158..522 | 1..365 | 1825 | 100 | Plus |
TfIIA-L.a | 1514 | TfIIA-L.a | 1261..1514 | 1311..1564 | 1270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 23078962..23079393 | 1132..1563 | 2130 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 23078018..23078325 | 373..680 | 1525 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 23078656..23078900 | 889..1133 | 1225 | 100 | Plus |
chr3R | 27901430 | chr3R | 23078386..23078593 | 681..888 | 1040 | 100 | Plus |
chr3R | 27901430 | chr3R | 23077457..23077658 | 164..365 | 1010 | 100 | Plus |
chr3R | 27901430 | chr3R | 23076392..23076559 | 1..168 | 825 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 27256032..27256464 | 1132..1564 | 2165 | 100 | Plus |
3R | 32079331 | 3R | 27255088..27255395 | 373..680 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 27255726..27255970 | 889..1133 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 27255456..27255663 | 681..888 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 27254527..27254728 | 164..365 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 27253462..27253629 | 1..168 | 825 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26996863..26997295 | 1132..1564 | 2165 | 100 | Plus |
3R | 31820162 | 3R | 26995919..26996226 | 373..680 | 1540 | 100 | Plus |
3R | 31820162 | 3R | 26996557..26996801 | 889..1133 | 1225 | 100 | Plus |
3R | 31820162 | 3R | 26996287..26996494 | 681..888 | 1040 | 100 | Plus |
3R | 31820162 | 3R | 26995358..26995559 | 164..365 | 1010 | 100 | Plus |
3R | 31820162 | 3R | 26994293..26994460 | 1..168 | 825 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 556..611 | 921..979 | 135 | 72.9 | Plus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5723..5805 | 925..1010 | 116 | 62.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 23076392..23076555 | 1..164 | 100 | -> | Plus |
chr3R | 23077458..23077658 | 165..367 | 99 | -> | Plus |
chr3R | 23078014..23078325 | 368..680 | 98 | -> | Plus |
chr3R | 23078386..23078593 | 681..888 | 100 | -> | Plus |
chr3R | 23078656..23078701 | 889..934 | 100 | == | Plus |
chr3R | 23078850..23078900 | 1083..1133 | 100 | -> | Plus |
chr3R | 23078964..23079393 | 1134..1563 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 1..1101 | 141..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 1..1101 | 141..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 1..1101 | 141..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 1..1101 | 141..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 1..1101 | 141..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 33..1595 | 1..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 33..1595 | 1..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 33..1595 | 1..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 33..1595 | 1..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RA | 33..1595 | 1..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27253462..27253625 | 1..164 | 100 | -> | Plus |
3R | 27254528..27254728 | 165..367 | 99 | -> | Plus |
3R | 27255084..27255395 | 368..680 | 98 | -> | Plus |
3R | 27255456..27255663 | 681..888 | 100 | -> | Plus |
3R | 27255726..27255970 | 889..1133 | 100 | -> | Plus |
3R | 27256034..27256463 | 1134..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27253462..27253625 | 1..164 | 100 | -> | Plus |
3R | 27254528..27254728 | 165..367 | 99 | -> | Plus |
3R | 27255084..27255395 | 368..680 | 98 | -> | Plus |
3R | 27255456..27255663 | 681..888 | 100 | -> | Plus |
3R | 27255726..27255970 | 889..1133 | 100 | -> | Plus |
3R | 27256034..27256463 | 1134..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27253462..27253625 | 1..164 | 100 | -> | Plus |
3R | 27254528..27254728 | 165..367 | 99 | -> | Plus |
3R | 27255084..27255395 | 368..680 | 98 | -> | Plus |
3R | 27255456..27255663 | 681..888 | 100 | -> | Plus |
3R | 27255726..27255970 | 889..1133 | 100 | -> | Plus |
3R | 27256034..27256463 | 1134..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 23080250..23080450 | 165..367 | 99 | -> | Plus |
arm_3R | 23079184..23079347 | 1..164 | 100 | -> | Plus |
arm_3R | 23080806..23081117 | 368..680 | 98 | -> | Plus |
arm_3R | 23081178..23081385 | 681..888 | 100 | -> | Plus |
arm_3R | 23081448..23081692 | 889..1133 | 100 | -> | Plus |
arm_3R | 23081756..23082185 | 1134..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26995915..26996226 | 368..680 | 98 | -> | Plus |
3R | 26996287..26996494 | 681..888 | 100 | -> | Plus |
3R | 26996557..26996801 | 889..1133 | 100 | -> | Plus |
3R | 26996865..26997294 | 1134..1563 | 100 | Plus | |
3R | 26994293..26994456 | 1..164 | 100 | -> | Plus |
3R | 26995359..26995559 | 165..367 | 99 | -> | Plus |
Translation from 140 to 1240
> LD24213.pep MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA SKAVELSPDSGDGSHPPPIVANNPKSHKAANAKAKKAAAATAVTSHQHIG GNSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASM MQKQQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQ VPASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQK TLAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAE EEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNM RGKDYVFQKSNGDAEW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16279-PA | 364 | GF16279-PA | 1..364 | 1..366 | 1340 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11539-PA | 366 | GG11539-PA | 1..366 | 1..366 | 1526 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19494-PA | 369 | GH19494-PA | 1..369 | 1..366 | 1174 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIA-L-PA | 366 | CG5930-PA | 1..366 | 1..366 | 1855 | 100 | Plus |
TfIIA-L-PB | 363 | CG5930-PB | 1..363 | 1..366 | 1824 | 99.2 | Plus |
TfIIA-L-PC | 324 | CG5930-PC | 1..324 | 40..366 | 1630 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22255-PA | 381 | GI22255-PA | 1..381 | 1..366 | 1174 | 76.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24482-PA | 177 | GL24482-PA | 1..177 | 1..178 | 502 | 61.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19238-PB | 359 | GA19238-PB | 1..359 | 1..366 | 1274 | 84.2 | Plus |
Dpse\GA19238-PA | 356 | GA19238-PA | 1..356 | 1..366 | 1236 | 80.9 | Plus |
Dpse\GA19238-PC | 317 | GA19238-PC | 1..317 | 40..366 | 1027 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10381-PA | 366 | GM10381-PA | 1..366 | 1..366 | 1903 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21332-PA | 115 | GD21332-PA | 6..115 | 257..366 | 564 | 98.2 | Plus |
Dsim\GD15189-PA | 81 | GD15189-PA | 1..75 | 1..75 | 404 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24046-PA | 379 | GJ24046-PA | 1..379 | 1..366 | 1142 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22574-PA | 379 | GK22574-PA | 1..379 | 1..366 | 1300 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23726-PA | 366 | GE23726-PA | 1..366 | 1..366 | 1543 | 95.1 | Plus |
Translation from 140 to 1240
> LD24213.hyp MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA SKAVELSPDSGDGSHPPPIVANNPKFQAANAKAKKAAAATAVTSHQHIGG NSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASMM QKQQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQV PASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQKT LAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAEE EPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMR GKDYVFQKSNGDAEW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIA-L-PA | 366 | CG5930-PA | 1..366 | 1..365 | 1826 | 99.2 | Plus |
TfIIA-L-PB | 363 | CG5930-PB | 1..363 | 1..365 | 1825 | 99.5 | Plus |
TfIIA-L-PC | 324 | CG5930-PC | 1..324 | 40..365 | 1631 | 99.4 | Plus |