Clone LD24239 Report

Search the DGRC for LD24239

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:242
Well:39
Vector:pOT2
Associated Gene/TranscriptCG1789-RA
Protein status:LD24239.pep: gold
Preliminary Size:1300
Sequenced Size:841

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1789 2001-01-01 Release 2 assignment
CG1789 2002-05-16 Blastp of sequenced clone
CG1789 2003-01-01 Sim4 clustering to Release 3
CG1789 2008-04-29 Release 5.5 accounting
CG1789 2008-08-15 Release 5.9 accounting
CG1789 2008-12-18 5.12 accounting

Clone Sequence Records

LD24239.complete Sequence

841 bp (841 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118931

> LD24239.complete
TCAAAACAGAACATATTTGATTGCTGTCGAGGATTAGCATAAATTGAAGA
TGTCATCGTGGAAGAATGCGTCGAAAAGCAACCAGAAGGTGCACAGGGAG
CGCCACCAGCCGGAGTCGCGCCAGCATCTGGGATTCCTGGAGAAGAAAAA
GGACTACAAGAAGCGAGCCATCGACGCACAGAAAAAGCAAAAGACCTTGA
AGCTATTGTACCGCCGGGCGCAGAACAAGAATCCCGATGAGTTCTACCAC
CATATGATCAACTCCAAGCTGTCCAACGATGAGCACCACGAGAAGGACAC
GAAGGACGAGCACACGCCCGAGCAATTGGCCCTCATGCAGACGCAGGACC
TCAAGTACGTGGTGATGAAGCGCACCATGGAGCGCAAGAAGATCGAACGC
TTGAAGGCCTCGCTGGTGGACGTGGATGCCATTAAGGGAGCAGCCAACAA
ACGTATCAAATTTGACGAAGACGGATACATGGAGTTGGACATGGGCGAAT
GGCTTTTAAAGCATGATGACGAGGAGGAAGAGGAGGAAAAGAAGAAGAAA
TCGAAAACAACTGAACCAAACCCCATCAAACAGCAGCGCATCAACGAGCT
GAAGAAACGCGAGCAGCGTGAAAGGGAACTCGGCATCGTCCAGCAGAAGA
TTCAGCTGAAGAACACCCTCAAGCAGCCACGCCTACTGAAGCCGAGGAAA
ATAAAGCCGGGAACCAAGGACAGTGCGCCCGTCTACAAATTCCGCTACGA
ACGCAAGAAATAGAATATTTCCCCTCTAGTTAATAAAGCAATTAAGTGTT
AGTTGAAGACTTTTGACAAAACTAAAAAAAAAAAAAAAAAA

LD24239.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 981 CG1789-RA 88..911 1..824 4120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8612303..8612845 11..553 2670 99.4 Plus
chrX 22417052 chrX 8612969..8613239 553..823 1310 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8720557..8721109 1..553 2765 100 Plus
X 23542271 X 8721233..8721504 553..824 1360 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8728655..8729207 1..553 2765 100 Plus
X 23527363 X 8729331..8729602 553..824 1360 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:25:25 has no hits.

LD24239.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:26:05 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8612291..8612845 1..553 99 -> Plus
chrX 8612970..8613239 554..823 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:01:53 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..714 50..763 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:39 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..714 50..763 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:17 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..714 50..763 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:16 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..714 50..763 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:31 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..714 50..763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:28:03 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..821 1..821 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:39 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..821 1..821 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:17 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 38..860 1..823 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:16 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..821 1..821 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:31 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 38..860 1..823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:05 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
X 8720557..8721109 1..553 100 -> Plus
X 8721234..8721503 554..823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:05 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
X 8720557..8721109 1..553 100 -> Plus
X 8721234..8721503 554..823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:05 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
X 8720557..8721109 1..553 100 -> Plus
X 8721234..8721503 554..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:17 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8614590..8615142 1..553 100 -> Plus
arm_X 8615267..8615536 554..823 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:34 Download gff for LD24239.complete
Subject Subject Range Query Range Percent Splice Strand
X 8728655..8729207 1..553 100 -> Plus
X 8729332..8729601 554..823 100   Plus

LD24239.hyp Sequence

Translation from 49 to 762

> LD24239.hyp
MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTL
KLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQD
LKYVVMKRTMERKKIERLKASLVDVDAIKGAANKRIKFDEDGYMELDMGE
WLLKHDDEEEEEEKKKKSKTTEPNPIKQQRINELKKREQRERELGIVQQK
IQLKNTLKQPRLLKPRKIKPGTKDSAPVYKFRYERKK*

LD24239.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 237 CG1789-PA 1..237 1..237 1234 100 Plus

LD24239.pep Sequence

Translation from 49 to 762

> LD24239.pep
MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTL
KLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQD
LKYVVMKRTMERKKIERLKASLVDVDAIKGAANKRIKFDEDGYMELDMGE
WLLKHDDEEEEEEKKKKSKTTEPNPIKQQRINELKKREQRERELGIVQQK
IQLKNTLKQPRLLKPRKIKPGTKDSAPVYKFRYERKK*

LD24239.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19176-PA 232 GF19176-PA 1..232 1..237 807 72 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18271-PA 227 GG18271-PA 1..227 1..237 969 82.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24884-PA 228 GH24884-PA 1..228 1..237 731 62.4 Plus
Dgri\GH24935-PA 103 GH24935-PA 1..93 1..115 308 56.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 237 CG1789-PA 1..237 1..237 1234 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15031-PA 229 GI15031-PA 1..229 1..237 713 66.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12956-PA 227 GL12956-PA 1..227 1..237 797 71 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14710-PA 227 GA14710-PA 1..227 1..237 789 70.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21797-PA 236 GM21797-PA 1..236 1..237 1043 89.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16916-PA 236 GD16916-PA 1..236 1..237 1043 89.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15382-PA 229 GJ15382-PA 1..229 1..237 789 66.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16111-PA 294 GK16111-PA 1..161 1..161 617 75.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15802-PA 227 GE15802-PA 1..227 1..237 954 80.8 Plus