Clone LD24245 Report

Search the DGRC for LD24245

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:242
Well:45
Vector:pOT2
Associated Gene/TranscriptDp-RA
Protein status:LD24245.pep: gold
Preliminary Size:2562
Sequenced Size:2495

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4654 2001-01-01 Release 2 assignment
CG4654 2001-11-29 Blastp of sequenced clone
CG4654 2003-01-01 Sim4 clustering to Release 3
Dp 2008-04-29 Release 5.5 accounting
Dp 2008-08-15 Release 5.9 accounting
Dp 2008-12-18 5.12 accounting

Clone Sequence Records

LD24245.complete Sequence

2495 bp (2495 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069526

> LD24245.complete
CTGCTTTGCCTTTCCCACATGAAAACGAAAAGCAGCCACTTGGTGGAAAT
TTTGTGACCATTTTGTTGCGCTTAGAAATTGCGGAAATTCGCGCTGCTGC
CAGCCGTTCGATAGCTAAAAGTTCGCCGTATCTTTTGCCACTAATCTCGT
GAAAATCCGTGCGCCGAAACACCGCGAAAAAGGCCACCGAAAAAGGGCCG
CCGCTGTGAGTGTGTGTGAGCAGCAGAAAAGAAAAAAAAAATGCCCTGCC
GCTGGAAGTGAAAAATGCGCTCGCCATTTTGACTTGGGCGACACTTATTT
TTTGTACAAGTGCGCTCCCCATTGCAGTCGTCGTCGTCGTGGTCGTGGTC
CGCATCCGGATTTGCACACGTGCCCCAGTCCGTGGGTGCAGTACGTCCGC
CTATCCACCGCCGTCGCCCATTCCAGCTCCATTTGCCCCCCCCTAGCACA
CACGTTGCGGCGAAACGGCACGTAGCACTGCTCTTTCCTTTTGTTTTTGG
CGGTCCACCTGGTGAGCGGTAAGCGACAACAACAAGATCACTTGATCTCC
GGCGGCCGAAAAATGGCGCATTCGACGGGCGGTACGGTGAAGACCGATGA
GGTGAACTTCTTCTTCCGGAACGAGCACGGACAAATATCCAAAATGCTGA
AGCCGGCCCAGAACAAGTCCGAAATGGAGGGAGGTAAGCCCGTGGCGGTG
GTCTACGCCACCGGCTCATCCGCGCGCAACAGCGGAAGTGCTAGCGGCAT
CGGCAACGTGGGACGCATGGGCGCCTTTAGTCAGATGGGCAGTCAAGGGC
AGTTTATACGACTGCAGGACAACGGACTGTCCATTCCAAAAACAGAAGCA
GGTACCACCTACACCACCGTTTCGGCGCAAAAGACTTCGGGTGCTGGCAG
TGGTCATTACGACTTGCCCTTGAAGGGAGATCGCTATGTGAAGTTTACAC
CAAATCCCATAAAAATGAAATCAAAACTCCATGCCATTCAGAGCAACTCG
TTGCACTCCATGTCGGCCTCCTCATCGTCCGTTCAAAGGAAACGCAAGCC
GGACAAGGCAGGCAAAGGTTTGCGCCATTTCTCGATGAAGGTATGCGAAA
AGGTGGAGGAGAAGGGCAAGACCACCTACAATGAGGTGGCCGACGACCTG
GTCAGCGAGGAGATGAAGAACAATGCGTACGACAACAACTGTGATCAAAA
GAATATCCGACGTCGTGTCTACGATGCGCTCAACGTACTGATGGCAATCA
ATGTTATTTCCAAGGACAAGAAGGAGATTCGCTGGATAGGACTGCCCGCA
AATTCGACAGAGACATTTCTGGCCCTGGAAGAGGAAAACTGTCAGCGCCG
CGAGCGAATAAAACAGAAAAACGAAATGTTGCGCGAAATGATCATGCAGC
ATGTGGCGTTCAAGGGATTGGTCGAGCGGAACAAGCGAAACGAGAGCCAA
GGCGTGGTGCCTTCCCCGAATGCCTCGATCCAGCTACCGTTCATCATCGT
GAACACGCACAAGTCCACGAAAATCAACTGCAGTGTGACCAACGACAAGT
CCGAATACATATTCAAGTTCGACAAAACCTTCGAAATGCACGATGACATT
GAGGTGCTCAAGCGTATGGGATTCCTATTGGGACTGGATAAGGGCGAATG
CACGCCGGAGAACATTGAACGAGTCAAGTCGTGGGTGCCTCCAAACCTTG
CCAAATACGTAGAAGCCTACGGCACCGGCAAGACTGGCGAAAATATGTAC
GAATCGGATGACGAGGACAATGAGTTCAACGGGTACCTGGAGTCGGCCAA
TGAGTCCCAGGGCTTTGCACAACACTCGGCACAACACACCACCGATGGCG
AGTTCAAGCTGGAGATGGATGATGACGAGCTGGACGACGACATTGATTGA
GCTGATGGTGCCGCCGTCATTGTGCCAGCCATGGCCGATGCGGACACGGA
TGCGGATGGAGGAGCAGATGCTGATGCGGAGGACACGTTTAGTTTTACGT
TTATCAACGCTTTGTTAGGTTTGCCACGGCCCCCTGGTTAGTCAGGAGCC
GCACTCCACTCCAATCCACTCCACACCCAATCCGACCCACCCACACAATT
GGTTTTGTTTACTTCTCAATGAGACTCTTAAATTATATATATACAATCTC
GCAGCGACGAGAAAGATTCGGTAGTTCATGTATGTAAGTGTAGTTTGCAT
ACACAGTTTGTAATTGTATCATTGAAGATTTATGTTTAAGCTGAAACGTT
TTTAAAATAATTTGTCTAGTTAAGGAGAACGCGTTTTTAGTTCAAACCAC
AATTCACATAAGGCAATACCGCGAAACCACATGCCCAGACTAATGTTCAC
TCTCTAATTAGTTGTTATCAGTCTCCCTTTTCCCCCCAATGGCCTTTTCA
TGTTTGGGTAGGCTTAAGCAAAAGCGATAATGTTATGGGTAATTGTCTCT
TAATAATATAATATACCAAAACTGTAAAAAAAAAAAAAAAAAAAA

LD24245.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dp-RA 2758 Dp-RA 88..2563 1..2476 12380 100 Plus
Dp.f 3007 Dp.f 88..2563 1..2476 12380 100 Plus
Dp.e 3066 Dp.e 41..1755 1..1715 8575 100 Plus
Dp.e 3066 Dp.e 1810..2572 1714..2476 3815 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9114340..9115101 1714..2475 3810 100 Plus
chr2R 21145070 chr2R 9109828..9110457 1..630 3150 100 Plus
chr2R 21145070 chr2R 9113358..9113691 979..1312 1670 100 Plus
chr2R 21145070 chr2R 9113758..9113997 1311..1550 1200 100 Plus
chr2R 21145070 chr2R 9112822..9112981 629..788 800 100 Plus
chr2R 21145070 chr2R 9113163..9113294 847..978 660 100 Plus
chr2R 21145070 chr2R 9114201..9114285 1631..1715 425 100 Plus
chr2R 21145070 chr2R 9114056..9114139 1549..1632 420 100 Plus
chr2R 21145070 chr2R 9113046..9113107 787..848 310 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:14:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13226984..13227746 1714..2476 3815 100 Plus
2R 25286936 2R 13222484..13223113 1..630 3150 100 Plus
2R 25286936 2R 13226002..13226335 979..1312 1670 100 Plus
2R 25286936 2R 13226402..13226641 1311..1550 1200 100 Plus
2R 25286936 2R 13225466..13225625 629..788 800 100 Plus
2R 25286936 2R 13225807..13225938 847..978 660 100 Plus
2R 25286936 2R 13226845..13226929 1631..1715 425 100 Plus
2R 25286936 2R 13226700..13226783 1549..1632 420 100 Plus
2R 25286936 2R 13225690..13225751 787..848 310 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13228183..13228945 1714..2476 3815 100 Plus
2R 25260384 2R 13223683..13224312 1..630 3150 100 Plus
2R 25260384 2R 13227201..13227534 979..1312 1670 100 Plus
2R 25260384 2R 13227601..13227840 1311..1550 1200 100 Plus
2R 25260384 2R 13226665..13226824 629..788 800 100 Plus
2R 25260384 2R 13227006..13227137 847..978 660 100 Plus
2R 25260384 2R 13228044..13228128 1631..1715 425 100 Plus
2R 25260384 2R 13227899..13227982 1549..1632 420 100 Plus
2R 25260384 2R 13226889..13226950 787..848 310 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:43:12 has no hits.

LD24245.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:43:52 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9109828..9110456 1..629 100 -> Plus
chr2R 9112823..9112980 630..787 100 -> Plus
chr2R 9113047..9113107 788..848 100 -> Plus
chr2R 9113165..9113294 849..978 100 -> Plus
chr2R 9113358..9113691 979..1312 100 -> Plus
chr2R 9113760..9113995 1313..1548 100 -> Plus
chr2R 9114056..9114138 1549..1631 100 -> Plus
chr2R 9114202..9114285 1632..1715 100 -> Plus
chr2R 9114342..9115101 1716..2475 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:06 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 1..1338 563..1900 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:49 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 1..1338 563..1900 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:56:28 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 1..1338 563..1900 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:17:00 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 1..1338 563..1900 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:42:14 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 1..1338 563..1900 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:54 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 88..2562 1..2475 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:48 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 88..2562 1..2475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:28 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 52..2526 1..2475 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:17:00 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 88..2562 1..2475 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:14 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 52..2526 1..2475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:52 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13222484..13223112 1..629 100 -> Plus
2R 13225467..13225624 630..787 100 -> Plus
2R 13225691..13225751 788..848 100 -> Plus
2R 13225809..13225938 849..978 100 -> Plus
2R 13226002..13226335 979..1312 100 -> Plus
2R 13226404..13226639 1313..1548 100 -> Plus
2R 13226700..13226782 1549..1631 100 -> Plus
2R 13226846..13226929 1632..1715 100 -> Plus
2R 13226986..13227745 1716..2475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:52 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13222484..13223112 1..629 100 -> Plus
2R 13225467..13225624 630..787 100 -> Plus
2R 13225691..13225751 788..848 100 -> Plus
2R 13225809..13225938 849..978 100 -> Plus
2R 13226002..13226335 979..1312 100 -> Plus
2R 13226404..13226639 1313..1548 100 -> Plus
2R 13226700..13226782 1549..1631 100 -> Plus
2R 13226846..13226929 1632..1715 100 -> Plus
2R 13226986..13227745 1716..2475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:52 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13222484..13223112 1..629 100 -> Plus
2R 13225467..13225624 630..787 100 -> Plus
2R 13225691..13225751 788..848 100 -> Plus
2R 13225809..13225938 849..978 100 -> Plus
2R 13226002..13226335 979..1312 100 -> Plus
2R 13226404..13226639 1313..1548 100 -> Plus
2R 13226700..13226782 1549..1631 100 -> Plus
2R 13226846..13226929 1632..1715 100 -> Plus
2R 13226986..13227745 1716..2475 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:28 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9109989..9110617 1..629 100 -> Plus
arm_2R 9112972..9113129 630..787 100 -> Plus
arm_2R 9113196..9113256 788..848 100 -> Plus
arm_2R 9113314..9113443 849..978 100 -> Plus
arm_2R 9113507..9113840 979..1312 100 -> Plus
arm_2R 9113909..9114144 1313..1548 100 -> Plus
arm_2R 9114205..9114287 1549..1631 100 -> Plus
arm_2R 9114351..9114434 1632..1715 100 -> Plus
arm_2R 9114491..9115250 1716..2475 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:46 Download gff for LD24245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13228045..13228128 1632..1715 100 -> Plus
2R 13227603..13227838 1313..1548 100 -> Plus
2R 13227899..13227981 1549..1631 100 -> Plus
2R 13227201..13227534 979..1312 100 -> Plus
2R 13223683..13224311 1..629 100 -> Plus
2R 13226666..13226823 630..787 100 -> Plus
2R 13226890..13226950 788..848 100 -> Plus
2R 13227008..13227137 849..978 100 -> Plus
2R 13228185..13228944 1716..2475 100   Plus

LD24245.hyp Sequence

Translation from 562 to 1899

> LD24245.hyp
MAHSTGGTVKTDEVNFFFRNEHGQISKMLKPAQNKSEMEGGKPVAVVYAT
GSSARNSGSASGIGNVGRMGAFSQMGSQGQFIRLQDNGLSIPKTEAGTTY
TTVSAQKTSGAGSGHYDLPLKGDRYVKFTPNPIKMKSKLHAIQSNSLHSM
SASSSSVQRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSEE
MKNNAYDNNCDQKNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTE
TFLALEEENCQRRERIKQKNEMLREMIMQHVAFKGLVERNKRNESQGVVP
SPNASIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDKTFEMHDDIEVLK
RMGFLLGLDKGECTPENIERVKSWVPPNLAKYVEAYGTGKTGENMYESDD
EDNEFNGYLESANESQGFAQHSAQHTTDGEFKLEMDDDELDDDID*

LD24245.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dp-PA 445 CG4654-PA 1..445 1..445 2315 100 Plus
Dp-PB 441 CG4654-PB 16..441 20..445 2199 99.5 Plus
Dp-PC 417 CG4654-PC 1..417 28..445 2155 99.8 Plus

LD24245.pep Sequence

Translation from 562 to 1899

> LD24245.pep
MAHSTGGTVKTDEVNFFFRNEHGQISKMLKPAQNKSEMEGGKPVAVVYAT
GSSARNSGSASGIGNVGRMGAFSQMGSQGQFIRLQDNGLSIPKTEAGTTY
TTVSAQKTSGAGSGHYDLPLKGDRYVKFTPNPIKMKSKLHAIQSNSLHSM
SASSSSVQRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSEE
MKNNAYDNNCDQKNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTE
TFLALEEENCQRRERIKQKNEMLREMIMQHVAFKGLVERNKRNESQGVVP
SPNASIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDKTFEMHDDIEVLK
RMGFLLGLDKGECTPENIERVKSWVPPNLAKYVEAYGTGKTGENMYESDD
EDNEFNGYLESANESQGFAQHSAQHTTDGEFKLEMDDDELDDDID*

LD24245.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11948-PA 444 GF11948-PA 1..431 1..432 1850 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20367-PA 446 GG20367-PA 1..446 1..445 2304 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20730-PA 450 GH20730-PA 1..437 1..432 1700 74.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dp-PA 445 CG4654-PA 1..445 1..445 2315 100 Plus
Dp-PB 441 CG4654-PB 16..441 20..445 2199 99.5 Plus
Dp-PC 417 CG4654-PC 1..417 28..445 2155 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20813-PA 447 GI20813-PA 1..434 1..432 1618 74.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11558-PA 181 GL11558-PA 16..152 10..143 451 69.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18332-PA 446 GA18332-PA 16..427 10..426 1739 82.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21454-PA 447 GM21454-PA 1..447 1..445 2348 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10952-PA 383 GD10952-PA 1..378 1..377 1954 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20546-PA 447 GJ20546-PA 1..434 1..432 1618 75.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22007-PA 456 GK22007-PA 1..442 1..432 1715 76.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12526-PA 446 GE12526-PA 1..436 1..435 2195 95.2 Plus