Clone LD24308 Report

Search the DGRC for LD24308

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:243
Well:8
Vector:pOT2
Associated Gene/Transcriptl(1)G0193-RA
Protein status:LD24308.pep: gold
Preliminary Size:2200
Sequenced Size:2573

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2206 2001-01-01 Release 2 assignment
CG2206 2001-09-19 Blastp of sequenced clone
CG2206 2003-01-01 Sim4 clustering to Release 3
l(1)G0193 2008-04-29 Release 5.5 accounting
l(1)G0193 2008-08-15 Release 5.9 accounting
l(1)G0193 2008-12-18 5.12 accounting

Clone Sequence Records

LD24308.complete Sequence

2573 bp (2573 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058541

> LD24308.complete
AGCGGCGAGAGCAGCACAGCAGATTAATCTGCCAACGTCGTCGAAACTCG
ACGCTCGAGCTCGAGACAAAACTCGACTCTCTGTTTTTGTGACTATCCTC
CCATTTGCGTTTTGATTTTCAGCGGGCGCAGTTGCGTGCCAGCCCGTGTC
TATCTGTCTGTCTGTGTGTTTGCTTGTTTGTGCAAGCATTTAATCATAAT
ATTTAAAAGACACCCCACCATCGTCAGCACAACATCCCCAACGATCGTCA
AATTTCGCGCTGCAATAAATAAATAAACATTCATATACAAAACGAAACCC
AAATAGCACTCACGCACAGCCGGCTGCAGGATGAGATTTATAAATTGGGT
ACTTCCCCTGCTTCTGGCCACGTTGGTCGCCCTGCAACAGCCCACACTAA
CGGACGCTCTGATCGAGGATGTCCTGGACATCATACATGTGGTCAAAGAG
GTCACCTCCGGCGTCCTCAAGGCCTGGGACATTGTACAATCCTCCCCGTT
GGCGGCCAACATTGATTTCCCACTGATGCGCGAGAAACAGAAGAAGGTGT
TGCAGCGCCTCAAAGAAGTCAGCAAGCAAATAGACAATACCGAAGATCAG
CACGCTCAATATGTTGCCTTGGCCATCGAATCGGTGACTAGCTTCATGCA
CAACAACGCTCCAATTATGGCTAAGATGAATGATATCTCGGACACGATCA
ATAGGATCTCATCGCGCTATCAGCAGATGCAGAAGTACGAGGCTTACAAG
GACAAGTTGGAGATGTCCACGCTGATAACGTTTGCGGAGTGGACAGTGTC
GCCGAATGCACATTCGGTGCACCATCTGATGGATCGTCTGCATATCACTC
TACTTGGCAACGAGGATCGATCTTCCAACACAACGTCCACCAATCTACTC
CAACAGCTGGCCACTGCCTATGAGGTGTCTACCGATCAAATTTGCAATAC
CATGCAATCGGCCCAGCAGTTTATATACTCACTATATGCGGATATAGCCC
TGACCGAACTGAAAGCCTACACCATGATGGAATTCTCGTGGATGATGTTG
CGGGTCTACGGGAAGGGCAACTACACCCAGGAGGCGGAAATCATGCGTTC
CGAATATGAGAAGAGGACGGAACGCACACTAAAAATACTCAAGGATGTGA
TGCTACGAGCTGATCGTATCGTTTACCGCTGTGATCCGACGAAACATGTA
CGGGGAGTCACCTATGACGAGGTCACGCGCCTCCTTCAAGGCTACATTGA
AAACGAGGTGGATTTGAATAAAGAGGAAACTTGCCGAGAGACGTGTGACT
TTTATCAGTCCACCCGCAGTGAAGGCTGCTTTAAGGATCTCTACTGTTCC
CGTCAGCCGAAATGTAGTGGTCGTCTGTACAACTGCAGGTTCGTAGACTC
CGACATGTGGGTGTGCCCGTCGCCACAGAATAGCACGCGGCGCTATGAGT
TCATCGAGTACGAAAACGGACGCGTCCTTGGCCAGCGGGGTAAGTGCACC
AGGGGCACCACCAAGGTGGACAGCTGGTGGCGTTACCTTCTCTGGCACTG
CAGCTACTGCTTCTGCCTGTGCGACGAGGAGGGTCTGAAGTCTGATCGTT
TCTTCAATCTGCGGGACACGATCGCCGATGTCAAGCGCAACCGAGTCGTG
ACTGGTTTGCGTTTTGTAAAGCAAAATCGCATTTTCCATCTGCAAATCCA
GGAGGGCGAACTCCTGCCTCGTGGTATTGTCAATCAAAGCACTCTGGAAT
GGAAACCCGTGGAAAAGTACAACGTCTTTGATCGTCATGTGAAGAATGGC
GTTGATTATCATAAGTTGAGCTACGAGAAACGCACCATCGATCTGGACGA
TGTGGATACGGATGACAATTCCTTTGTCGTTACCGGCGTGCGATTCCGTG
TGGTGGGCACACATCTGAATTTGGAGGCCTACTACAGTGAGTTTGATTTC
CGGACGGGTCAGCTCATCCGGCCGGAGTACAATAGCTATTGGAAGTCCAA
CGACAATACCGATGTCAGCGGCGCACGCAGGGAGAAACTGCGTCTGAGCA
ACGCCGACGTGTCTACGCGGACAATAGCACACTCGATACCTCTGTCGCGC
CACAATCAGTACATCGACTTCACTAACACTGGACTGGACAAGGATGCCGC
CCAGAGCACAGTGCCGTTTATGGACATCCAGGACGTGGTCTCGAATCCAC
CAGTACCACTAGCCGGCATTGGCATTTACTACAAGGGCCGCAACGGCTAC
GGCGGCTTCCTGGGCCCCAAGATCATCACCTACGACTTCATGCCCCACGT
TCAGGTGCCAAAGAATAGATTCTAAAGCGGAGAGAAGCGGTGCTGTTTCC
ATCCCGCACATATGTCATAGCTTTTTTTTAGTTGTACACTACCTATCAAT
ACACACTTGCGTTTAACTGTCGCATAGTCTAAGTGAGATCAGAGGAGAAC
GAACCGCAGGAGATGCAGAATCCGGCAAGACAAGAATATAAAAACAAATT
ATATTGAAAATAACAAAAGAAATAAAAACGAATGTGAATCTGAGAAACCA
GAAAAAAAAAAAAAAAAAAAAAA

LD24308.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0193-RA 2729 l(1)G0193-RA 125..2676 1..2552 12760 100 Plus
l(1)G0193.a 2505 l(1)G0193.a 877..2505 924..2552 8145 100 Plus
l(1)G0193-RB 2674 l(1)G0193-RB 994..2621 925..2552 8140 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7834406..7835126 1643..923 3605 100 Minus
chrX 22417052 chrX 7838303..7838902 600..1 3000 100 Minus
chrX 22417052 chrX 7833375..7833898 2551..2028 2620 100 Minus
chrX 22417052 chrX 7833954..7834342 2031..1643 1945 100 Minus
chrX 22417052 chrX 7837790..7838119 926..597 1650 100 Minus
chr2L 23010047 chr2L 1824285..1824473 2290..2102 255 75.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7942509..7943229 1643..923 3605 100 Minus
X 23542271 X 7946407..7947006 600..1 3000 100 Minus
X 23542271 X 7941477..7942001 2552..2028 2625 100 Minus
X 23542271 X 7942057..7942445 2031..1643 1945 100 Minus
X 23542271 X 7945894..7946223 926..597 1650 100 Minus
2L 23513712 2L 1824436..1824624 2290..2102 255 75.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7950607..7951327 1643..923 3605 100 Minus
X 23527363 X 7954505..7955104 600..1 3000 100 Minus
X 23527363 X 7949575..7950099 2552..2028 2625 100 Minus
X 23527363 X 7950155..7950543 2031..1643 1945 100 Minus
X 23527363 X 7953992..7954321 926..597 1650 100 Minus
2L 23513712 2L 1824436..1824624 2290..2102 255 75.6 Minus
Blast to na_te.dros performed 2019-03-15 18:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 72..135 206..146 115 67.2 Minus

LD24308.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:26:07 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7833375..7833895 2031..2551 100 <- Minus
chrX 7833955..7834341 1644..2030 100 <- Minus
chrX 7834406..7835124 925..1643 100 <- Minus
chrX 7837792..7838115 601..924 100 <- Minus
chrX 7838303..7838902 1..600 94   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:11 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..1995 331..2325 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:28 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..1995 331..2325 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:25 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..1995 331..2325 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:03 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..1995 331..2325 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:40 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..1995 331..2325 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:06 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..2551 1..2551 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:27 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..2551 1..2551 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:25 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..2453 99..2551 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:03 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..2551 1..2551 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:40 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1..2453 99..2551 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:07 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
X 7941478..7941998 2031..2551 100 <- Minus
X 7942058..7942444 1644..2030 100 <- Minus
X 7942509..7943227 925..1643 100 <- Minus
X 7945896..7946219 601..924 100 <- Minus
X 7946407..7947006 1..600 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:07 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
X 7941478..7941998 2031..2551 100 <- Minus
X 7942058..7942444 1644..2030 100 <- Minus
X 7942509..7943227 925..1643 100 <- Minus
X 7945896..7946219 601..924 100 <- Minus
X 7946407..7947006 1..600 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:07 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
X 7941478..7941998 2031..2551 100 <- Minus
X 7942058..7942444 1644..2030 100 <- Minus
X 7942509..7943227 925..1643 100 <- Minus
X 7945896..7946219 601..924 100 <- Minus
X 7946407..7947006 1..600 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:25 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7835511..7836031 2031..2551 100 <- Minus
arm_X 7836091..7836477 1644..2030 100 <- Minus
arm_X 7836542..7837260 925..1643 100 <- Minus
arm_X 7839929..7840252 601..924 100 <- Minus
arm_X 7840440..7841039 1..600 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:54 Download gff for LD24308.complete
Subject Subject Range Query Range Percent Splice Strand
X 7949576..7950096 2031..2551 100 <- Minus
X 7950156..7950542 1644..2030 100 <- Minus
X 7950607..7951325 925..1643 100 <- Minus
X 7953994..7954317 601..924 100 <- Minus
X 7954505..7955104 1..600 100   Minus

LD24308.hyp Sequence

Translation from 330 to 2324

> LD24308.hyp
MRFINWVLPLLLATLVALQQPTLTDALIEDVLDIIHVVKEVTSGVLKAWD
IVQSSPLAANIDFPLMREKQKKVLQRLKEVSKQIDNTEDQHAQYVALAIE
SVTSFMHNNAPIMAKMNDISDTINRISSRYQQMQKYEAYKDKLEMSTLIT
FAEWTVSPNAHSVHHLMDRLHITLLGNEDRSSNTTSTNLLQQLATAYEVS
TDQICNTMQSAQQFIYSLYADIALTELKAYTMMEFSWMMLRVYGKGNYTQ
EAEIMRSEYEKRTERTLKILKDVMLRADRIVYRCDPTKHVRGVTYDEVTR
LLQGYIENEVDLNKEETCRETCDFYQSTRSEGCFKDLYCSRQPKCSGRLY
NCRFVDSDMWVCPSPQNSTRRYEFIEYENGRVLGQRGKCTRGTTKVDSWW
RYLLWHCSYCFCLCDEEGLKSDRFFNLRDTIADVKRNRVVTGLRFVKQNR
IFHLQIQEGELLPRGIVNQSTLEWKPVEKYNVFDRHVKNGVDYHKLSYEK
RTIDLDDVDTDDNSFVVTGVRFRVVGTHLNLEAYYSEFDFRTGQLIRPEY
NSYWKSNDNTDVSGARREKLRLSNADVSTRTIAHSIPLSRHNQYIDFTNT
GLDKDAAQSTVPFMDIQDVVSNPPVPLAGIGIYYKGRNGYGGFLGPKIIT
YDFMPHVQVPKNRF*

LD24308.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0193-PA 664 CG2206-PA 1..664 1..664 3511 100 Plus
l(1)G0193-PB 646 CG2206-PB 98..646 129..664 2524 88.4 Plus
CG31664-PC 529 CG31664-PC 4..526 122..660 1402 50.5 Plus
CG31664-PB 528 CG31664-PB 4..525 122..660 1396 50.1 Plus
CG30409-PB 98 CG30409-PB 29..96 293..358 156 39.7 Plus

LD24308.pep Sequence

Translation from 330 to 2324

> LD24308.pep
MRFINWVLPLLLATLVALQQPTLTDALIEDVLDIIHVVKEVTSGVLKAWD
IVQSSPLAANIDFPLMREKQKKVLQRLKEVSKQIDNTEDQHAQYVALAIE
SVTSFMHNNAPIMAKMNDISDTINRISSRYQQMQKYEAYKDKLEMSTLIT
FAEWTVSPNAHSVHHLMDRLHITLLGNEDRSSNTTSTNLLQQLATAYEVS
TDQICNTMQSAQQFIYSLYADIALTELKAYTMMEFSWMMLRVYGKGNYTQ
EAEIMRSEYEKRTERTLKILKDVMLRADRIVYRCDPTKHVRGVTYDEVTR
LLQGYIENEVDLNKEETCRETCDFYQSTRSEGCFKDLYCSRQPKCSGRLY
NCRFVDSDMWVCPSPQNSTRRYEFIEYENGRVLGQRGKCTRGTTKVDSWW
RYLLWHCSYCFCLCDEEGLKSDRFFNLRDTIADVKRNRVVTGLRFVKQNR
IFHLQIQEGELLPRGIVNQSTLEWKPVEKYNVFDRHVKNGVDYHKLSYEK
RTIDLDDVDTDDNSFVVTGVRFRVVGTHLNLEAYYSEFDFRTGQLIRPEY
NSYWKSNDNTDVSGARREKLRLSNADVSTRTIAHSIPLSRHNQYIDFTNT
GLDKDAAQSTVPFMDIQDVVSNPPVPLAGIGIYYKGRNGYGGFLGPKIIT
YDFMPHVQVPKNRF*

LD24308.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20993-PA 851 GF20993-PA 382..850 196..663 2294 85.7 Plus
Dana\GF11569-PA 662 GF11569-PA 1..661 1..661 1575 43.1 Plus
Dana\GF20993-PA 851 GF20993-PA 7..207 8..205 813 82.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17594-PA 844 GG17594-PA 296..844 129..664 2457 82.9 Plus
Dere\GG24571-PA 488 GG24571-PA 1..477 167..660 1436 54.3 Plus
Dere\GG17594-PA 844 GG17594-PA 1..200 1..200 983 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24541-PA 827 GH24541-PA 362..825 200..662 2043 75 Plus
Dgri\GH24541-PA 827 GH24541-PA 22..178 20..176 672 77.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0193-PA 664 CG2206-PA 1..664 1..664 3511 100 Plus
l(1)G0193-PB 646 CG2206-PB 98..646 129..664 2524 88.4 Plus
CG31664-PE 606 CG31664-PE 20..603 56..660 1422 47.4 Plus
CG31664-PD 605 CG31664-PD 20..602 56..660 1416 47.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21656-PA 727 GI21656-PA 26..725 20..662 2720 71.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15246-PA 806 GL15246-PA 335..806 196..664 2279 84.1 Plus
Dper\GL10792-PA 670 GL10792-PA 3..658 8..658 1573 45.8 Plus
Dper\GL15246-PA 806 GL15246-PA 1..202 4..204 813 75.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15301-PA 806 GA15301-PA 335..806 196..664 2278 84.1 Plus
Dpse\GA15824-PA 670 GA15824-PA 3..658 8..658 1563 45.6 Plus
Dpse\GA15301-PA 806 GA15301-PA 1..202 4..204 813 75.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11959-PA 799 GM11959-PA 266..799 129..664 2288 79.3 Plus
Dsec\GM15999-PA 549 GM15999-PA 25..545 28..567 1154 41.1 Plus
Dsec\GM11959-PA 799 GM11959-PA 1..198 1..198 985 96 Plus
Dsec\GM16585-PA 248 GM16585-PA 1..241 167..417 623 45 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24578-PA 646 GD24578-PA 98..646 129..664 2485 84.8 Plus
Dsim\GD22891-PA 490 GD22891-PA 1..479 167..660 1417 52.6 Plus
Dsim\GD22890-PA 490 GD22890-PA 1..479 167..660 1405 52.2 Plus
Dsim\GD11752-PA 163 GD11752-PA 2..155 499..653 432 49.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16894-PA 824 GJ16894-PA 355..822 196..662 2139 78.8 Plus
Dvir\GJ21381-PA 647 GJ21381-PA 11..646 27..661 1633 45.4 Plus
Dvir\GJ16894-PA 824 GJ16894-PA 28..207 20..198 750 80.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16218-PA 711 GK16218-PA 2..711 10..664 2807 73.2 Plus
Dwil\GK19560-PA 672 GK19560-PA 3..662 8..652 1641 47 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17494-PA 844 GE17494-PA 319..844 136..664 2488 84.7 Plus
Dyak\GE14278-PA 678 GE14278-PA 4..657 10..661 1549 44.1 Plus
Dyak\GE15356-PA 489 GE15356-PA 1..478 167..660 1437 54.3 Plus
Dyak\GE17494-PA 844 GE17494-PA 1..201 1..201 1005 95.5 Plus