Clone LD24362 Report

Search the DGRC for LD24362

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:243
Well:62
Vector:pOT2
Associated Gene/TranscriptCG6650-RA
Protein status:LD24362.pep: gold
Preliminary Size:2200
Sequenced Size:2249

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6650 2001-01-01 Release 2 assignment
CG6650 2001-07-04 Blastp of sequenced clone
CG6650 2003-01-01 Sim4 clustering to Release 3
CG6650 2008-04-29 Release 5.5 accounting
CG6650 2008-08-15 Release 5.9 accounting
CG6650 2008-12-18 5.12 accounting

Clone Sequence Records

LD24362.complete Sequence

2249 bp (2249 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051700

> LD24362.complete
GAAGGCGGATTGTCACATACAAAATAGTTTGGAAAGCCCAAACTGAGGCG
AACCAATCACACAACAATCCACGCCCACAATGACCGCCCTGCGATACATG
GGATGGATCACCGGCTGTTCCGTCCTAACGGCCTTTGTTTCCATAATTTG
GCAGGCATTCATCGCCCTGCAGACGCTTAACAGGACGACTGTCCTGCTCA
CCGGTCTCCTGGCAATCGAGGGATCCCTGAAGCGGACCGCGTTGGAACCG
GCACCCAAGGTGGCCATCGGCTACGGAGCCTGCACGGACTTGCAGATAAA
CGCCACTGAATTTCTGGATCGCTACTATGGGCGCCGGATTCCAGTCGCAG
CAGCCACTACAGGATCTCGGGCGGTCGTGAACAACGAGGACGAGCTCTTG
CAGTCCTTTGCCTATTACTTTCAGAACGGCGCTGCAGCGGAGCGAGTGAT
GGCAAACAGTACCCTCTTCACACAGCTGGTGGGCTACGCCAAGGTGATGG
ACAAGGAGAGGATCAATTGGTACATGGGTGGTAACGCCCCACTGATGGCC
GTGCGCTTTTTTATGGAGGGAGCTCAAGTGCTACTGGGCGCCCACATGTC
TAGAAAGCTGCGGCCACTGCTGCCAAAGGAGATTCGTCTGGCTGGTGACG
AGATTCCAAACGATGACATCCATCTTATTCTGGAGTACAAGGCTGGTGAC
AAATGGGGCCCATATGTGGCACCTCGCGCCAATCGCTACATTCTGCACAA
CGATCGAAATAATCCGCATCTGCGGGCCGTGGAGCAGTTGACGGATGCTT
TGAAGATGTATCAGCCACAGCTGTTGGTTGTCAGCGGGCTGCAAATGATG
GACATGTTCACCTTTAAGTCTGGTGAGCGAGAGGCGCGCCTGCAGCAAGT
ACAAAGGCAACTAACCAGCCAGCCGCAGGGCACTCTGAACCACTTCGAGA
TGGCTTCTTACGTGGAGTTGCAGCTGCTTCAACAGCTTCGACACTTTGTA
CTGCCCTACGTAGACTCCCTGGGAATGAACGAACAAGAGCTCTCTAACCT
GCAGCAGGTTCTTGCTCACGGACGGACGACCTTAGCCACCGACTGGAATC
CGCGCATAGCTCACACCCTTGACCAGATGCGGCAGGTTTTCATTAGTCTC
CTTGAAGATTACGAAGACCGAAGCTCAAGCGATGCCAAGCGTCGCTCTAT
CTCGCGCATACATGTGCACACGTTGGCCTATCAGGCGATCCTTACCACAG
CGGGCTCCAAGTGGAAAAACACACGTGCTGCCGCTGCAAAGGCAGCGCTC
ACTGCTCACCGATACGTCTGCAAATCCCAATTTATTAACCCGGAGGCAGT
GCTGCAGGTTCTAGATGACAGTTTCGCCACCTCGGCTCAGGCGGATGCGC
CGCGAATGCGCATTGGTGCAGCCAGTCCCGTGCCCTGTTGGCGGGAGTAT
ATCCAGTACGGTCGTCACCGGCAACGGCTAGAGGTGGAAATCTGTGTGGC
CCCGGTGCTGGTGTGTCGCGAAGCCAGAAAAACGGCTGGGGCTGGCGACA
ACATCTCTGCCTCCGGACTCGCGGCACAGTTGTAGGATCGGCTATCACAA
TGGGACAGGCAAAGACTGCATAGTATTTCACTAGAAACCTGCAATGAAAG
ACTCGAATAGAAGGCCAGGACGAAACCCCGATGCATTCCCCCGCTGGATG
GACATGAACTCGGCATGTTTAGCACCTTAGTGACCTTAGAAACGCGTTAC
CTTCACACAAATCTGACGAATATGCTCAACCGATAGCACGAAGAAAGCAA
CGAATCCCATGAGACCACATATCCAGATGAGTTTTAGGCGAAGATGCTGA
ATTCTGTATATGTATGCCTTCTCATCATAAACGTAAATTCCACGTGTTCA
AAATTATTCCTAATGCAACAGCATCGAAACTCGGAAACGAATGTCACCTA
GTCCTAAGTTATGTTAGTCACTAATTTTACTTTTTTGACATATTTGAGCC
ATTCCTACTTACAATTTGTTTTGCGCACTTGGTTTCAAATCATAATGAAA
AATGCCTCAACGAATTAAACAAGCGATTCAGCACTGAAAGATAGTTGTGA
CCTTAAGTTCCCTGTATTTGTCGAAATATTTGAAACATTTTTATTTGAAA
CAAAAAGTATGTGATAATTGGACCTTAAATGTTATGAGCTTAAATTTCGT
TCTGTTACAAATACATTTGTATTCTCAAGAAAAAAAAAAAAAAAAAAAA

LD24362.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-RA 2871 CG6650-RA 629..2859 1..2231 11155 100 Plus
CG6650.a 2939 CG6650.a 697..2927 1..2231 11155 100 Plus
CG6650.b 2984 CG6650.b 972..2981 222..2231 10050 100 Plus
CG6650.b 2984 CG6650.b 697..918 1..222 1110 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14023847..14024742 1334..2229 4315 98.8 Plus
chr3L 24539361 chr3L 14023059..14023785 607..1333 3635 100 Plus
chr3L 24539361 chr3L 14022526..14022746 222..442 1105 100 Plus
chr3L 24539361 chr3L 14022251..14022472 1..222 1095 99.5 Plus
chr3L 24539361 chr3L 14022835..14023000 442..607 830 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
pncr014:3L-RA 2204 CR33944-RA 2091..2204 2231..2118 570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14033745..14034642 1334..2231 4490 100 Plus
3L 28110227 3L 14032957..14033683 607..1333 3635 100 Plus
3L 28110227 3L 14032149..14032370 1..222 1110 100 Plus
3L 28110227 3L 14032424..14032644 222..442 1105 100 Plus
3L 28110227 3L 14032733..14032898 442..607 830 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14026845..14027742 1334..2231 4490 100 Plus
3L 28103327 3L 14026057..14026783 607..1333 3635 100 Plus
3L 28103327 3L 14025249..14025470 1..222 1110 100 Plus
3L 28103327 3L 14025524..14025744 222..442 1105 100 Plus
3L 28103327 3L 14025833..14025998 442..607 830 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:26:09 has no hits.

LD24362.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:24 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14022251..14022472 1..222 99 -> Plus
chr3L 14022527..14022745 223..441 100 -> Plus
chr3L 14022835..14022999 442..606 100 -> Plus
chr3L 14023059..14023785 607..1333 100 -> Plus
chr3L 14023847..14024742 1334..2229 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:20 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 1..1506 80..1585 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:51 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RB 1..1506 80..1585 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:28 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 1..1506 80..1585 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:28 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 1..1506 80..1585 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:45 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 1..1506 80..1585 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:15:15 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
pncr014:3L-RA 2093..2204 2118..2229 100   Minus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:55 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 592..2820 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:51 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RB 49..2277 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:28 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 635..2863 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:28 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 592..2820 1..2229 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:45 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 635..2863 1..2229 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:24 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14032149..14032370 1..222 100 -> Plus
3L 14032425..14032643 223..441 100 -> Plus
3L 14032733..14032897 442..606 100 -> Plus
3L 14032957..14033683 607..1333 100 -> Plus
3L 14033745..14034640 1334..2229 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:24 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14032149..14032370 1..222 100 -> Plus
3L 14032425..14032643 223..441 100 -> Plus
3L 14032733..14032897 442..606 100 -> Plus
3L 14032957..14033683 607..1333 100 -> Plus
3L 14033745..14034640 1334..2229 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:24 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14032149..14032370 1..222 100 -> Plus
3L 14032425..14032643 223..441 100 -> Plus
3L 14032733..14032897 442..606 100 -> Plus
3L 14032957..14033683 607..1333 100 -> Plus
3L 14033745..14034640 1334..2229 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:28 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14025249..14025470 1..222 100 -> Plus
arm_3L 14025525..14025743 223..441 100 -> Plus
arm_3L 14025833..14025997 442..606 100 -> Plus
arm_3L 14026057..14026783 607..1333 100 -> Plus
arm_3L 14026845..14027740 1334..2229 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:09 Download gff for LD24362.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14025249..14025470 1..222 100 -> Plus
3L 14025525..14025743 223..441 100 -> Plus
3L 14025833..14025997 442..606 100 -> Plus
3L 14026057..14026783 607..1333 100 -> Plus
3L 14026845..14027740 1334..2229 100   Plus

LD24362.pep Sequence

Translation from 79 to 1584

> LD24362.pep
MTALRYMGWITGCSVLTAFVSIIWQAFIALQTLNRTTVLLTGLLAIEGSL
KRTALEPAPKVAIGYGACTDLQINATEFLDRYYGRRIPVAAATTGSRAVV
NNEDELLQSFAYYFQNGAAAERVMANSTLFTQLVGYAKVMDKERINWYMG
GNAPLMAVRFFMEGAQVLLGAHMSRKLRPLLPKEIRLAGDEIPNDDIHLI
LEYKAGDKWGPYVAPRANRYILHNDRNNPHLRAVEQLTDALKMYQPQLLV
VSGLQMMDMFTFKSGEREARLQQVQRQLTSQPQGTLNHFEMASYVELQLL
QQLRHFVLPYVDSLGMNEQELSNLQQVLAHGRTTLATDWNPRIAHTLDQM
RQVFISLLEDYEDRSSSDAKRRSISRIHVHTLAYQAILTTAGSKWKNTRA
AAAKAALTAHRYVCKSQFINPEAVLQVLDDSFATSAQADAPRMRIGAASP
VPCWREYIQYGRHRQRLEVEICVAPVLVCREARKTAGAGDNISASGLAAQ
L*

LD24362.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24587-PA 500 GF24587-PA 1..500 1..501 2338 88.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15667-PA 501 GG15667-PA 1..501 1..501 2525 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15105-PA 500 GH15105-PA 1..500 1..501 2117 81.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-PB 501 CG6650-PB 1..501 1..501 2569 100 Plus
CG6650-PC 501 CG6650-PC 1..501 1..501 2569 100 Plus
CG6650-PA 501 CG6650-PA 1..501 1..501 2569 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13756-PA 500 GI13756-PA 1..500 1..501 2131 80 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25288-PA 500 GL25288-PA 1..500 1..501 2184 81.4 Plus
Dper\GL26242-PA 284 GL26242-PA 102..284 250..453 603 66.2 Plus
Dper\GL26242-PA 284 GL26242-PA 3..103 19..146 298 52.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19752-PA 500 GA19752-PA 1..500 1..501 2184 81.4 Plus
Dpse\GA28094-PA 346 GA28094-PA 52..344 116..486 677 48.7 Plus
Dpse\GA28094-PA 346 GA28094-PA 1..47 1..47 152 59.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25447-PA 501 GM25447-PA 1..501 1..501 2651 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14473-PA 501 GD14473-PA 1..501 1..501 2651 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13747-PA 500 GJ13747-PA 1..500 1..501 2123 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17138-PA 503 GK17138-PA 1..503 1..501 2104 81.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21996-PA 501 GE21996-PA 1..501 1..501 2623 97.2 Plus

LD24362.hyp Sequence

Translation from 79 to 1584

> LD24362.hyp
MTALRYMGWITGCSVLTAFVSIIWQAFIALQTLNRTTVLLTGLLAIEGSL
KRTALEPAPKVAIGYGACTDLQINATEFLDRYYGRRIPVAAATTGSRAVV
NNEDELLQSFAYYFQNGAAAERVMANSTLFTQLVGYAKVMDKERINWYMG
GNAPLMAVRFFMEGAQVLLGAHMSRKLRPLLPKEIRLAGDEIPNDDIHLI
LEYKAGDKWGPYVAPRANRYILHNDRNNPHLRAVEQLTDALKMYQPQLLV
VSGLQMMDMFTFKSGEREARLQQVQRQLTSQPQGTLNHFEMASYVELQLL
QQLRHFVLPYVDSLGMNEQELSNLQQVLAHGRTTLATDWNPRIAHTLDQM
RQVFISLLEDYEDRSSSDAKRRSISRIHVHTLAYQAILTTAGSKWKNTRA
AAAKAALTAHRYVCKSQFINPEAVLQVLDDSFATSAQADAPRMRIGAASP
VPCWREYIQYGRHRQRLEVEICVAPVLVCREARKTAGAGDNISASGLAAQ
L*

LD24362.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-PB 501 CG6650-PB 1..501 1..501 2569 100 Plus
CG6650-PC 501 CG6650-PC 1..501 1..501 2569 100 Plus
CG6650-PA 501 CG6650-PA 1..501 1..501 2569 100 Plus