Clone LD24363 Report

Search the DGRC for LD24363

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:243
Well:63
Vector:pOT2
Associated Gene/TranscriptCG11127-RA
Protein status:LD24363.pep: gold
Preliminary Size:1300
Sequenced Size:1466

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11127 2001-01-01 Release 2 assignment
CG11127 2002-05-30 Blastp of sequenced clone
CG11127 2003-01-01 Sim4 clustering to Release 3
CG11127 2008-04-29 Release 5.5 accounting
CG11127 2008-08-15 Release 5.9 accounting
CG11127 2008-12-18 5.12 accounting

Clone Sequence Records

LD24363.complete Sequence

1466 bp (1466 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118332

> LD24363.complete
ATTGTTAATTGTTTTGGTTTTACTTGCATTAAGATTACCTGGCGAGGATG
CGGAAATACCAGCAACTGGTGCTGCTGCTCATCTCCTGCCTCAGCGTCAG
CATCCTGCTGATGTACAAGACCGAGAACAATCGCCTAAAGTACGTGCTCA
AGTACGTCAACTTCTTCGGACGCAACGATGCCGCTGTCCTCCGCCGCCTG
GAGAACGGAACCAAGGAGGACGGGGCGCAGGTGCTGTGGCGCCCTCTGCC
CGTGTGGCAGGTGATCGGAGACTCCTTTCATGCCTACTCCGCCTTCTGGA
TGCGCAACGAACTGGTGGCCGGCGGCGAAGCCCACGTTCTGGTGGTCGGA
AAAAAGGGAGCAGTAGTCGACTTCCGGTGCAGCTTGGACCTTCTGGGCGG
ACGCAGTGTGCAGGGAAAGTTTCGTTTTCAGAGGGACTCCATTGAGAGCC
TGGTGGATGACAAGTCTTCCAACTTCACCAGCTATCACTTCTTCTGCCAG
GTGAGCCGAGATTTCGGTCAGCCCGGCAGTGTCTCCTTCACGGACATAAC
AACCACCAGGAGTCCAGTGAGGCTGCGTCTGCGAAACCTGAGACCAGCGA
GCAAGAAGGACGACGACAAGGTGGTAGCTGTAGCGCACCGACTACCAGCC
ACCGTTTGCGTTGATCTCGTTGGCTTCAACATGACCTCCAAGTTCGCACG
TAATGAAAATGCTTTGCTGCAGTTCTTCCTGTTCCACCAGGCATTGGGAA
TAGAGAATTTCCTGGTCTACAACCACGACGAACTGCCAGAGGAAGTGCAT
CACCTGTTGGAGCGCACCAACATTCATCTGTATGGCCTGCCTTTTAACTT
TCCCTTCCAGCAGTCCAATGGCACACGTTCGCGAATCCATCAACTATTAC
TCACGGACTGCTTGCTGCGGAATGTGAACCACGCCGGCTTCACCCTTCTA
CTCCGCCCCAACGAGCTGTTCTTCCCCAACTCAAAGTTCTCTGGGGACCA
GGTGAAGGGATCGCTCCAGCAGCAGCTGCGACACTTCTCCTCCGAGATCA
CGCGCTTCGAACTGGCAACCATGTCCGTGTGCTTCGATGACCGGAAGAAA
CTGTTGCCCGACAACGTTCAGTACGACCCGGAGCGAAGATCTGAGTTCAA
AACATTGCTGAATCGCCTGGAGCTGCCGCCGGCGCAGCTCTTGGCCAGTA
CATCCGATGTGGAACTATCGTTATCAACCGGATTCGTGCACCGCTACGTG
GACTGCGACCATGTGGGCAGCGATGGCCTGCACGACTGGCGCAACGCAGT
TCGCGAGGACTTTATGGAACACATCAATGTGCTCCGCAACGAGGTGGAGC
TACTCATCCAGGAGCGTACGTTAAGGTTGAGATTTAAATACATGTAGTTT
TGAGAGATTGCTTGACTGCCATAAAGAGAATACAAGTAAGCACAAAAAAA
AAAAAAAAAAAAAAAA

LD24363.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11127-RA 1617 CG11127-RA 173..1616 1..1444 7220 100 Plus
CG11127.a 1395 CG11127.a 670..1394 720..1444 3625 100 Plus
CG11127.a 1395 CG11127.a 173..672 1..500 2500 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3350897..3352339 1..1443 7215 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7463543..7464986 1..1444 7220 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7464742..7466185 1..1444 7220 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:05:29 has no hits.

LD24363.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:06:39 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3350897..3352339 1..1443 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:22 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 1..1350 48..1397 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:29 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 1..1350 48..1397 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:52 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 1..1350 48..1397 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:09 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 1..1350 48..1397 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:26:02 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 1..1350 48..1397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:08:32 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 173..1615 1..1443 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:29 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 173..1615 1..1443 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:52 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 40..1482 1..1443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:09 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 173..1615 1..1443 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:26:02 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 40..1482 1..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:39 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7463543..7464985 1..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:39 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7463543..7464985 1..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:39 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7463543..7464985 1..1443 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:52 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3351048..3352490 1..1443 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:36 Download gff for LD24363.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7464742..7466184 1..1443 100   Plus

LD24363.pep Sequence

Translation from 47 to 1396

> LD24363.pep
MRKYQQLVLLLISCLSVSILLMYKTENNRLKYVLKYVNFFGRNDAAVLRR
LENGTKEDGAQVLWRPLPVWQVIGDSFHAYSAFWMRNELVAGGEAHVLVV
GKKGAVVDFRCSLDLLGGRSVQGKFRFQRDSIESLVDDKSSNFTSYHFFC
QVSRDFGQPGSVSFTDITTTRSPVRLRLRNLRPASKKDDDKVVAVAHRLP
ATVCVDLVGFNMTSKFARNENALLQFFLFHQALGIENFLVYNHDELPEEV
HHLLERTNIHLYGLPFNFPFQQSNGTRSRIHQLLLTDCLLRNVNHAGFTL
LLRPNELFFPNSKFSGDQVKGSLQQQLRHFSSEITRFELATMSVCFDDRK
KLLPDNVQYDPERRSEFKTLLNRLELPPAQLLASTSDVELSLSTGFVHRY
VDCDHVGSDGLHDWRNAVREDFMEHINVLRNEVELLIQERTLRLRFKYM*

LD24363.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11200-PA 438 GF11200-PA 1..438 1..437 1920 81.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23281-PA 437 GG23281-PA 1..437 1..437 2176 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21283-PA 451 GH21283-PA 1..451 1..437 1663 69 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11127-PA 449 CG11127-PA 1..449 1..449 2341 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19725-PA 453 GI19725-PA 1..453 1..437 1542 65.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20010-PA 375 GL20010-PA 1..375 67..437 1472 72.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10776-PA 440 GA10776-PA 1..440 1..437 1824 76.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20957-PA 437 GM20957-PA 1..437 1..437 2280 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10483-PA 437 GD10483-PA 1..437 1..437 2257 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17609-PA 454 GJ17609-PA 1..454 1..437 1557 65.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10682-PA 434 GK10682-PA 1..434 1..437 1399 62.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19128-PA 437 GE19128-PA 1..437 1..437 2138 92.2 Plus

LD24363.hyp Sequence

Translation from 47 to 1396

> LD24363.hyp
MRKYQQLVLLLISCLSVSILLMYKTENNRLKYVLKYVNFFGRNDAAVLRR
LENGTKEDGAQVLWRPLPVWQVIGDSFHAYSAFWMRNELVAGGEAHVLVV
GKKGAVVDFRCSLDLLGGRSVQGKFRFQRDSIESLVDDKSSNFTSYHFFC
QVSRDFGQPGSVSFTDITTTRSPVRLRLRNLRPASKKDDDKVVAVAHRLP
ATVCVDLVGFNMTSKFARNENALLQFFLFHQALGIENFLVYNHDELPEEV
HHLLERTNIHLYGLPFNFPFQQSNGTRSRIHQLLLTDCLLRNVNHAGFTL
LLRPNELFFPNSKFSGDQVKGSLQQQLRHFSSEITRFELATMSVCFDDRK
KLLPDNVQYDPERRSEFKTLLNRLELPPAQLLASTSDVELSLSTGFVHRY
VDCDHVGSDGLHDWRNAVREDFMEHINVLRNEVELLIQERTLRLRFKYM*

LD24363.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11127-PA 449 CG11127-PA 1..449 1..449 2341 100 Plus