Clone LD24380 Report

Search the DGRC for LD24380

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:243
Well:80
Vector:pOT2
Associated Gene/Transcriptcapt-RA
Protein status:LD24380.pep: gold
Preliminary Size:1920
Sequenced Size:1962

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5061 2001-01-01 Release 2 assignment
CG5074 2001-01-01 Release 2 assignment
CG5061 2002-12-11 Blastp of sequenced clone
CG5061 2003-01-01 Sim4 clustering to Release 3
capt 2008-04-29 Release 5.5 accounting
capt 2008-08-15 Release 5.9 accounting
capt 2008-12-18 5.12 accounting

Clone Sequence Records

LD24380.complete Sequence

1962 bp (1962 high quality bases) assembled on 2002-12-11

GenBank Submission: AF132566

> LD24380.complete
CGCCGGTGTTCGCTACGCAGCTTCTCGTCAGTTCTAATTGGAATACAACT
GCAGATCCTTGCAAATTCATCAGCAGCAAAAGAAGATAACGAGCCGGAAG
CCAAGCCCTCGGCCGCCGTCGACCACTTGGAGAGCATTTGCGAGCGACTG
GAGACCCTCGTCGACCGATTGGAACGGACTCTAACAGCGCCACAGCCGAT
AGAACTGCCCACGCCCACACTCCCGCCTCCGCCAGCCGAAGAAGAAGAAG
CTCTTCCAGTTTTTGAAAAAGCAGAGACACCACCTCCACCTCCCTCGCCG
CCCAGCAGCAACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGGGTCC
GCTGAGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTGGCGC
AGCATGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTACGTG
ACGCTGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGGAGCT
TCTGAAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGCGAGA
AGCACCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGAAAGC
ATTCCCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCTATGT
CAAGGAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTCAAGG
AGTGGAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTGGGTG
CAGACGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCACGGG
CTTGGTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCGCCAC
CACCGCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCTGAGT
GCCCTCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCCTCTTCGCCCA
GATCAACCAGGGTGCCGACATCACCAAGGGCTTGAAGAAGGTCACTGGCG
ACATGCAGACCCATAAAAATCCATCTCTACGCACTGGACCGGCTCCGTTC
AAATCGCCAGCCCAGTCGGGCGGCAGCAAGGCCGTTGCTGCTCCATCAGC
TGCGCAAGCCAAGGCGCCCGTTTTCGAGCGCGACGGAAAGAAGTGGATCA
TCGAGTACCAGAAGAACAACACCGGGCTGTTGGTGGAGAACGCCGAGATG
AACAACGTGGTGTATGTGTTCAAGTGTGAGGGATCCACTCTGACCGTCAA
GGGCAAGGTGAACAACATCGTCTTCGACTCCTGCAAGAAGTGCTCCCTGC
TGTTCGATTCCGTGGTGGCCTCCGTGGAGTTCGTCAACTGCCAGAGCGTG
CAGATGCAGGTGCTCGGCTCGGTGCCGACGGTATCGATCGACAAGACCGA
CGGCTGCCAGATGTATCTGTCCAAGGACTCGCTGGGCGTGGAGATCGTCA
ACTCCAAGTCCTCGGAGATGAACATCCTGTTGCCCGACGACAGCGGCGAT
TATACCGAGTTGGCTTTACCGGAGCAGTATAAGACCACGATTGCCGGCAA
GACCCTGAAGACTGTGTGCGTGGACAGCCTCGGCTAAGGCGGTTCTCCTC
CTCGGGGATCCTGTTCGTTGCTTTTCCAACTGTCGTCAGCAGCAATCATA
ATTGTATTTAATCTAAGTGCAAAGTTTTCGTAATTCAAAGATTTTTAGAT
CAAACATTTCGTATTGATGATGTTGCCAAACATTGCTGTCCTGGCTCGTG
GAAAGTATTTATATAATTTATTTCGATGGAAAAGCGATGGCCACAAACCG
AACCCAATGTATTTATATCGAGAGTGTGTTGCAATGAGAAACTGAGCATG
AAATCCGAACTTTTGAGCAGACTCTTTACTCGATCATCAGATGTAACTCC
TTTTTATATTCTATTTAATAAAATTTAAACTTTTTTATCAGAAAAAAAAA
AAAAAAAAAAAA

LD24380.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
capt-RA 2184 capt-RA 244..2184 1..1941 9705 100 Plus
capt.a 1973 capt.a 116..1973 84..1941 9290 100 Plus
capt-RB 3060 capt-RB 1204..3060 85..1941 9285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1152687..1153236 980..431 2720 99.6 Minus
chr2L 23010047 chr2L 1152094..1152618 1503..979 2625 100 Minus
chr2L 23010047 chr2L 1151595..1152032 1941..1504 2190 100 Minus
chr2L 23010047 chr2L 1153303..1153650 431..84 1725 99.7 Minus
chr2L 23010047 chr2L 1157999..1158083 85..1 425 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1152770..1153319 980..431 2750 100 Minus
2L 23513712 2L 1152177..1152701 1503..979 2625 100 Minus
2L 23513712 2L 1151677..1152115 1942..1504 2195 100 Minus
2L 23513712 2L 1153386..1153733 431..84 1740 100 Minus
2L 23513712 2L 1158079..1158163 85..1 425 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1152770..1153319 980..431 2750 100 Minus
2L 23513712 2L 1152177..1152701 1503..979 2625 100 Minus
2L 23513712 2L 1151677..1152115 1942..1504 2195 100 Minus
2L 23513712 2L 1153386..1153733 431..84 1740 100 Minus
2L 23513712 2L 1158079..1158163 85..1 425 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:29:20 has no hits.

LD24380.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:30:17 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1151595..1152032 1504..1941 100 <- Minus
chr2L 1152094..1152617 980..1503 100 <- Minus
chr2L 1152688..1153235 432..979 99 <- Minus
chr2L 1153303..1153648 86..431 99 <- Minus
chr2L 1157999..1158083 1..85 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:23 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 850..2352 85..1587 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:43 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 850..2352 85..1587 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:22:52 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 850..2352 85..1587 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:19 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 850..2352 85..1587 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:17 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 850..2352 85..1587 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:43 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RA 102..2042 1..1941 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:43 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RA 102..2042 1..1941 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:22:52 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RA 100..2040 1..1941 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:19 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RA 102..2042 1..1941 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:17 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RA 100..2040 1..1941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:17 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1151678..1152115 1504..1941 100 <- Minus
2L 1152177..1152700 980..1503 100 <- Minus
2L 1152771..1153318 432..979 100 <- Minus
2L 1153386..1153731 86..431 100 <- Minus
2L 1158079..1158163 1..85 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:17 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1151678..1152115 1504..1941 100 <- Minus
2L 1152177..1152700 980..1503 100 <- Minus
2L 1152771..1153318 432..979 100 <- Minus
2L 1153386..1153731 86..431 100 <- Minus
2L 1158079..1158163 1..85 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:17 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1151678..1152115 1504..1941 100 <- Minus
2L 1152177..1152700 980..1503 100 <- Minus
2L 1152771..1153318 432..979 100 <- Minus
2L 1153386..1153731 86..431 100 <- Minus
2L 1158079..1158163 1..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:22:52 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1151678..1152115 1504..1941 100 <- Minus
arm_2L 1152177..1152700 980..1503 100 <- Minus
arm_2L 1152771..1153318 432..979 100 <- Minus
arm_2L 1153386..1153731 86..431 100 <- Minus
arm_2L 1158079..1158163 1..85 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:02 Download gff for LD24380.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1158079..1158163 1..85 100   Minus
2L 1151678..1152115 1504..1941 100 <- Minus
2L 1152177..1152700 980..1503 100 <- Minus
2L 1152771..1153318 432..979 100 <- Minus
2L 1153386..1153731 86..431 100 <- Minus

LD24380.hyp Sequence

Translation from 0 to 1586

> LD24380.hyp
RRCSLRSFSSVLIGIQLQILANSSAAKEDNEPEAKPSAAVDHLESICERL
ETLVDRLERTLTAPQPIELPTPTLPPPPAEEEEALPVFEKAETPPPPPSP
PSSNMSVAGFEDIVAGPLSQYLTLSAKIGGDVAQHAELVKSAFGSQLQYV
TLATQIAQPAQPKQAELLKPTSTQISAIQDFREKHRSSPFFNHLSAISES
IPALGWVCVEKTPGPYVKEMNDAGQFYTNRVLKEWKEKDVTHVEWARAWV
QTLTELQAYIRQYHTTGLVWSGKGAAPAGGAPPPPPPGGLPPPPPMLDLS
ALKLDSAGDDRSALFAQINQGADITKGLKKVTGDMQTHKNPSLRTGPAPF
KSPAQSGGSKAVAAPSAAQAKAPVFERDGKKWIIEYQKNNTGLLVENAEM
NNVVYVFKCEGSTLTVKGKVNNIVFDSCKKCSLLFDSVVASVEFVNCQSV
QMQVLGSVPTVSIDKTDGCQMYLSKDSLGVEIVNSKSSEMNILLPDDSGD
YTELALPEQYKTTIAGKTLKTVCVDSLG*

LD24380.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
capt-PB 783 CG33979-PB 279..783 24..528 2610 99.4 Plus
capt-PC 424 CG33979-PC 1..424 105..528 2200 100 Plus
capt-PA 424 CG33979-PA 1..424 105..528 2200 100 Plus

LD24380.pep Sequence

Translation from 312 to 1586

> LD24380.pep
MSVAGFEDIVAGPLSQYLTLSAKIGGDVAQHAELVKSAFGSQLQYVTLAT
QIAQPAQPKQAELLKPTSTQISAIQDFREKHRSSPFFNHLSAISESIPAL
GWVCVEKTPGPYVKEMNDAGQFYTNRVLKEWKEKDVTHVEWARAWVQTLT
ELQAYIRQYHTTGLVWSGKGAAPAGGAPPPPPPGGLPPPPPMLDLSALKL
DSAGDDRSALFAQINQGADITKGLKKVTGDMQTHKNPSLRTGPAPFKSPA
QSGGSKAVAAPSAAQAKAPVFERDGKKWIIEYQKNNTGLLVENAEMNNVV
YVFKCEGSTLTVKGKVNNIVFDSCKKCSLLFDSVVASVEFVNCQSVQMQV
LGSVPTVSIDKTDGCQMYLSKDSLGVEIVNSKSSEMNILLPDDSGDYTEL
ALPEQYKTTIAGKTLKTVCVDSLG*

LD24380.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14733-PA 778 GF14733-PA 357..778 1..424 1952 94.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24610-PA 797 GG24610-PA 376..797 1..424 2249 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10564-PA 829 GH10564-PA 405..829 1..424 1819 86.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
capt-PC 424 CG33979-PC 1..424 1..424 2200 100 Plus
capt-PA 424 CG33979-PA 1..424 1..424 2200 100 Plus
capt-PB 783 CG33979-PB 360..783 1..424 2200 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21941-PA 821 GI21941-PA 400..821 1..424 1793 84 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15023-PA 666 GL15023-PA 393..639 3..249 1081 93.1 Plus
Dper\GL15032-PA 129 GL15032-PA 1..129 296..424 650 94.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25429-PA 812 GA25429-PA 391..812 1..424 1850 91.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16624-PA 759 GM16624-PA 363..759 1..424 2083 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22924-PA 786 GD22924-PA 363..786 1..424 2258 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17828-PA 786 GJ17828-PA 364..786 1..424 1798 84.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24366-PA 812 GK24366-PA 391..812 1..424 1883 90.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15744-PA 795 GE15744-PA 373..795 1..424 2253 99.1 Plus