Clone LD24381 Report

Search the DGRC for LD24381

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:243
Well:81
Vector:pOT2
Associated Gene/TranscriptCG9684-RA
Protein status:LD24381.pep: gold
Sequenced Size:2125

Clone Sequence Records

LD24381.complete Sequence

2125 bp assembled on 2013-02-04

GenBank Submission: BT150072.1

> LD24381.complete
AAAAACTCTTCCTTTTCGATCGGAAATAAAGTGTGACAACATGCTAGCAC
AAAAGTCAGTTGCCGGTGCTGATGAACTTGCGCAAGCCAAAGGAAAATGC
GTCCATTGCGCAAACGCAGCGGAAAGGGTCTGTCAGCGCTGCGGGGACTT
TTACTGCTCCAAGCATTGTCAGCGGCAAGATTGGCTACGTCATCGTTACA
TCTGCATCCCGCTGCCCGCGTTGGTTTCTCCCAATGAATATTCCGTGTTC
CAGAGCGACAGGGAATCAACTTTGGAGGGGGCCTGTTCGTTAAACGCTGA
CAAATCTGTAGTTGAGGCGTCGCCAATACCCCTCAGCCGTTCACCTATTC
TTCCGGATTTGCAGTGCAATAACGCCGGCCGTTCCAGCATCATTGCAGCC
AAAGATGATATTCCCGTTTCTCCGCCAAAAGCGATCATCCCGCCCAGCGG
TGCTATGGTATACATTACGGACTTCATATCCAGTAATCGTTGCTATATTC
GCGATGCCAGCGAATCTGCTGAAAGAGCGTTTGACGAAGTTTGCAAGAAG
GTTAATACCATAGCTACGTTATTGCCCAGAATAAAAAATCCACCACCAAA
TAGATTGTGCCTAGTCCACTTTAATGGCATGTATGTGCGAGCGAAGATGT
GTAAGAAGCTCCGTGAGGTTTCCCACTTATTTTTGGTCGATCTTGGAATC
AAACATTCTGGACCTTTTTTCGATTTTAAGGATATCAATGATGAGTTAAA
AGCATTGCCCTGTTCCAGCCAACTGGTGCAGCTCAAGAATGTATTGAATT
GTGACTATTCCAATGATGTCATTGCCTTCAACTCGAAATTCGTGGGCAAG
AAATATATGGCAACCATTAAAAAGTGCCCTGGATTACACCTCGTGGAACT
AGTAAACACGGAGATGAACTTTTCGGTAAATGAACAGTTAAACGCATTTT
TCAACAGTAAGAAGTTGCTACGAAACCCTAATTCTGCGGCCGAGAATATC
AAGTCATGTTCCTTAGAAGGTCCGCAACCTTCACATATTGATCAACCCAT
TGCAATTCCTGCAATCGAATGTAAGAAAATGTTAACGAAACCAGAGGTAC
AGAATGAGTGTGAGGAGATACTCAAGCAACAGAACTCCGGACAAATTGAT
CAATCAAAATCAACTAATGTACTGGTTACAGAAGGAGCCTCTAATAAGAT
GCTTGGCTTTATTGATCTTGCTGATAAGGCAACTAAAACTGATCAGGACA
CTGCACCAAAGCCTAAAGATGAAGACGTAAAACATTCCTTAACACAATGC
TTAACACCAAAAGCTAATTATCCGTTACAACTTCCAAACCATAAAAAAAA
TTTGGAACTTCCCGTTATCCATAAAACTAATGCCCAAACAAATGGAATCG
TAATGTCGAAAAACGAACATGTCCTAAAACCTCCTTTTGAGATGCGTAGA
TTTTCAATCGAATCTAAGGAAGGCATTGATCTCATCGTTGTGGATAGTAC
AAAAAAAAATCGAGGTATTTTTGGGGCCTTTGACAGCACCTACGCCTCCG
AATTTTCCGCCTTGCACTCTCGTTTATCAGAAATTACAGACTGCGAGCCT
TATAAGCCAGTTGTCAGGGAATATGTGCTTGCCAGATTTGAGGGTTCCTG
GTATCGTGGCAAAGTGGAACAGATTATAGTTGTTCCACGGCAGCAGACAA
AGTACCGGGTAATGTACCTCGATTACACGAATGTAGAGGACATAACCGAA
ATGGATATCCGTCGCTATCCATTAGACTTCACCGCTCCCTGTGCCACAAA
CCTTTGCGTGATTGACGAATTCCCGCACAACCCGAATGCAGCACAGGTTT
CCTATCTGGCTGAGGTTTTGAAGGTCCATCAGTCAGTTCATATTGATAGT
ATCAAATATATCAACCATATAGCCGTAATTAAATCGGGAAGTCTTATTCA
GAAGCTGTTGAGCTTGTAAATTTTAAGTGCATCAAATGCCATTTACTTGA
CACCACAACTAAATCGGGTCAAACACATTACGAAGTTATTGCGAATAAGC
ATTACGTTTTATAATTTTAAAAACATTTATATATAAATAAAATTCCATTA
AATAACAAAAAAAAAAAAAAAAAAA

LD24381.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4186816..4187699 1432..549 4420 100 Minus
chr3R 27901430 chr3R 4187921..4188397 553..77 2385 100 Minus
chr3R 27901430 chr3R 4185974..4186263 2106..1817 1450 100 Minus
chr3R 27901430 chr3R 4186317..4186522 1817..1612 1030 100 Minus
chr3R 27901430 chr3R 4186580..4186758 1611..1433 895 100 Minus
chr3R 27901430 chr3R 4188455..4188530 76..1 380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8360800..8361683 1432..549 4420 100 Minus
3R 32079331 3R 8361905..8362381 553..77 2385 100 Minus
3R 32079331 3R 8359956..8360247 2108..1817 1460 100 Minus
3R 32079331 3R 8360301..8360506 1817..1612 1030 100 Minus
3R 32079331 3R 8360564..8360742 1611..1433 895 100 Minus
3R 32079331 3R 8362439..8362514 76..1 380 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:13:55 has no hits.

LD24381.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:14:51 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4186317..4186522 1612..1817 100 <- Minus
chr3R 4186580..4186758 1433..1611 100 <- Minus
chr3R 4186816..4187697 551..1432 100 <- Minus
chr3R 4187924..4188397 77..550 100 <- Minus
chr3R 4188455..4188530 1..76 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-04-26 11:08:40 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9684-RA 1..1929 41..1969 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:24:57 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9684-RA 1..1929 41..1969 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:55:41 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9684-RA 1..1929 41..1969 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-26 11:08:40 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9684-RA 34..2139 1..2106 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:24:57 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9684-RA 41..2146 1..2106 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:55:41 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9684-RA 41..2146 1..2106 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:51 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8360564..8360742 1433..1611 100 <- Minus
3R 8359958..8360246 1818..2106 100 <- Minus
3R 8360301..8360506 1612..1817 100 <- Minus
3R 8360800..8361681 551..1432 100 <- Minus
3R 8361908..8362381 77..550 100 <- Minus
3R 8362439..8362514 1..76 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:51 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8360564..8360742 1433..1611 100 <- Minus
3R 8359958..8360246 1818..2106 100 <- Minus
3R 8360301..8360506 1612..1817 100 <- Minus
3R 8360800..8361681 551..1432 100 <- Minus
3R 8361908..8362381 77..550 100 <- Minus
3R 8362439..8362514 1..76 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:51 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8360564..8360742 1433..1611 100 <- Minus
3R 8359958..8360246 1818..2106 100 <- Minus
3R 8360301..8360506 1612..1817 100 <- Minus
3R 8360800..8361681 551..1432 100 <- Minus
3R 8361908..8362381 77..550 100 <- Minus
3R 8362439..8362514 1..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:24:57 Download gff for LD24381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4185680..4185968 1818..2106 100 <- Minus
arm_3R 4186023..4186228 1612..1817 100 <- Minus
arm_3R 4186286..4186464 1433..1611 100 <- Minus
arm_3R 4186522..4187403 551..1432 100 <- Minus
arm_3R 4187630..4188103 77..550 100 <- Minus
arm_3R 4188161..4188236 1..76 100   Minus

LD24381.hyp Sequence

Translation from 0 to 1968

> LD24381.hyp
KTLPFRSEIKCDNMLAQKSVAGADELAQAKGKCVHCANAAERVCQRCGDF
YCSKHCQRQDWLRHRYICIPLPALVSPNEYSVFQSDRESTLEGACSLNAD
KSVVEASPIPLSRSPILPDLQCNNAGRSSIIAAKDDIPVSPPKAIIPPSG
AMVYITDFISSNRCYIRDASESAERAFDEVCKKVNTIATLLPRIKNPPPN
RLCLVHFNGMYVRAKMCKKLREVSHLFLVDLGIKHSGPFFDFKDINDELK
ALPCSSQLVQLKNVLNCDYSNDVIAFNSKFVGKKYMATIKKCPGLHLVEL
VNTEMNFSVNEQLNAFFNSKKLLRNPNSAAENIKSCSLEGPQPSHIDQPI
AIPAIECKKMLTKPEVQNECEEILKQQNSGQIDQSKSTNVLVTEGASNKM
LGFIDLADKATKTDQDTAPKPKDEDVKHSLTQCLTPKANYPLQLPNHKKN
LELPVIHKTNAQTNGIVMSKNEHVLKPPFEMRRFSIESKEGIDLIVVDST
KKNRGIFGAFDSTYASEFSALHSRLSEITDCEPYKPVVREYVLARFEGSW
YRGKVEQIIVVPRQQTKYRVMYLDYTNVEDITEMDIRRYPLDFTAPCATN
LCVIDEFPHNPNAAQVSYLAEVLKVHQSVHIDSIKYINHIAVIKSGSLIQ
KLLSL*

LD24381.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9684-PA 642 CG9684-PA 1..642 14..655 3360 100 Plus

LD24381.pep Sequence

Translation from 1 to 1968

> LD24381.pep
KTLPFRSEIKCDNMLAQKSVAGADELAQAKGKCVHCANAAERVCQRCGDF
YCSKHCQRQDWLRHRYICIPLPALVSPNEYSVFQSDRESTLEGACSLNAD
KSVVEASPIPLSRSPILPDLQCNNAGRSSIIAAKDDIPVSPPKAIIPPSG
AMVYITDFISSNRCYIRDASESAERAFDEVCKKVNTIATLLPRIKNPPPN
RLCLVHFNGMYVRAKMCKKLREVSHLFLVDLGIKHSGPFFDFKDINDELK
ALPCSSQLVQLKNVLNCDYSNDVIAFNSKFVGKKYMATIKKCPGLHLVEL
VNTEMNFSVNEQLNAFFNSKKLLRNPNSAAENIKSCSLEGPQPSHIDQPI
AIPAIECKKMLTKPEVQNECEEILKQQNSGQIDQSKSTNVLVTEGASNKM
LGFIDLADKATKTDQDTAPKPKDEDVKHSLTQCLTPKANYPLQLPNHKKN
LELPVIHKTNAQTNGIVMSKNEHVLKPPFEMRRFSIESKEGIDLIVVDST
KKNRGIFGAFDSTYASEFSALHSRLSEITDCEPYKPVVREYVLARFEGSW
YRGKVEQIIVVPRQQTKYRVMYLDYTNVEDITEMDIRRYPLDFTAPCATN
LCVIDEFPHNPNAAQVSYLAEVLKVHQSVHIDSIKYINHIAVIKSGSLIQ
KLLSL*

LD24381.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18904-PA 632 GF18904-PA 1..631 14..655 1154 39.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17451-PA 640 GG17451-PA 1..640 26..655 1910 59.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20318-PA 555 GH20318-PA 361..554 463..655 500 47.7 Plus
Dgri\GH13268-PA 665 GH13268-PA 31..210 136..316 303 37.2 Plus
Dgri\GH13256-PA 121 GH13256-PA 1..117 537..652 292 47.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9684-PA 642 CG9684-PA 1..642 14..655 3360 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22373-PA 318 GI22373-PA 137..314 474..652 500 48.6 Plus
Dmoj\GI22729-PA 907 GI22729-PA 10..53 33..76 157 56.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23354-PA 663 GL23354-PA 20..663 28..655 1038 38.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21963-PA 662 GA21963-PA 1..662 14..655 1031 37.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26346-PA 628 GM26346-PA 1..628 14..655 2787 83.2 Plus
Dsec\GM25895-PA 896 GM25895-PA 9..52 33..76 157 54.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20872-PA 177 GD20872-PA 1..177 478..655 799 84.3 Plus
Dsim\GD20465-PA 896 GD20465-PA 9..52 33..76 157 54.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24407-PA 587 GJ24407-PA 411..584 478..652 517 50.9 Plus
Dvir\GJ24407-PA 587 GJ24407-PA 13..359 31..326 397 31 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10843-PA 599 GK10843-PA 419..596 475..655 344 37.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24851-PA 653 GE24851-PA 1..648 14..655 2138 63.7 Plus