Clone LD24448 Report

Search the DGRC for LD24448

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:244
Well:48
Vector:pOT2
Associated Gene/Transcriptben-RA
Protein status:LD24448.pep: gold
Preliminary Size:1300
Sequenced Size:861

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18319 2001-01-01 Release 2 assignment
CG18319 2001-11-29 Blastp of sequenced clone
CG18319 2003-01-01 Sim4 clustering to Release 3
ben 2008-04-29 Release 5.5 accounting
ben 2008-08-15 Release 5.9 accounting
ben 2008-12-18 5.12 accounting

Clone Sequence Records

LD24448.complete Sequence

861 bp (861 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069527

> LD24448.complete
CAGCAACGCACACACACACTACCAAACGGCTACATTTTTTTTCGAGTGTG
TTCGACATTCATAATTTTTGTGGTGGAGCTGCCTGCAAAATCGAATTTTA
TCAGTTTGCCAACGAAGTTATCGGCCATAACTGCAAATAAAGTTCAGCAA
TAACTTGGCGCTGTTACGATCTCAACGAGAAGGTCCAGACTCAACCCGCG
TTTCCAGTTCACCGCGTAAAAGGAACCAGCTAAACGATGTCCAGCCTGCC
ACGTCGCATCATCAAGGAGACTCAACGTTTGATGCAGGAGCCAGTGCCTG
GGATCAATGCCATTCCCGATGAGAACAATGCCCGTTACTTCCATGTGATC
GTGACCGGACCGAACGATTCGCCCTTCGAGGGCGGCGTGTTCAAGCTGGA
GCTGTTCCTACCGGAGGACTATCCAATGTCAGCGCCCAAAGTGCGCTTCA
TCACGAAGATCTACCATCCGAACATCGATCGTTTGGGCCGCATTTGCCTC
GACGTGCTGAAGGACAAGTGGAGTCCAGCCCTGCAGATCCGGACCATATT
GCTATCCATTCAGGCACTGCTCAGTGCACCCAATCCCGACGATCCGCTGG
CCAACGATGTGGCTGAGTTGTGGAAGGTCAACGAGGCGGAGGCCATTCGC
AATGCCCGCGAGTGGACCCAGAAATATGCCGTCGAAGACTGAACGCCCGA
GGTCAGGAGGAAAGTCAGAAAGCGGATCCGTCAGTTGTATCGGCGTTTTT
CCAGAAAGTGGGTGCGTGACATGAACGGGCGGGTGGGTAAATTGAATACT
TTAAAAGCAACCAGAAAAACCTAAAACATACGAAAGAAAACATAAAAAAA
AAAAAAAAAAA

LD24448.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
ben.r 1580 ben.r 57..913 1..857 4255 99.7 Plus
ben-RA 1937 ben-RA 57..913 1..857 4255 99.7 Plus
ben.o 1937 ben.o 57..913 1..857 4255 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13888685..13889357 171..843 3365 100 Plus
chrX 22417052 chrX 13886944..13887113 1..170 850 100 Plus
chr2L 23010047 chr2L 14561907..14562284 635..258 435 74.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13998095..13998781 171..857 3405 99.7 Plus
X 23542271 X 13996354..13996523 1..170 850 100 Plus
2L 23513712 2L 14563181..14563558 635..258 435 74.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14006193..14006879 171..857 3405 99.7 Plus
X 23527363 X 14004452..14004621 1..170 850 100 Plus
2L 23513712 2L 14563181..14563407 635..409 340 76.6 Minus
2L 23513712 2L 14563434..14563558 382..258 160 75.2 Minus
Blast to na_te.dros performed on 2019-03-16 19:30:16 has no hits.

LD24448.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:31:22 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13886944..13887113 1..170 100 -> Plus
chrX 13888685..13889357 171..843 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:28 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 1..456 237..692 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:25:30 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RB 1..456 237..692 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:07 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RB 1..456 237..692 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:52:43 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 1..456 237..692 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:08 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RB 1..456 237..692 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:01:25 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 1..843 1..843 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:25:30 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 1..843 1..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:07 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 10..852 1..843 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:52:43 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 1..843 1..843 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:08 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 10..852 1..843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:22 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
X 13996354..13996523 1..170 100 -> Plus
X 13998095..13998767 171..843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:22 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
X 13996354..13996523 1..170 100 -> Plus
X 13998095..13998767 171..843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:22 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
X 13996354..13996523 1..170 100 -> Plus
X 13998095..13998767 171..843 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:07 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13890387..13890556 1..170 100 -> Plus
arm_X 13892128..13892800 171..843 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:50 Download gff for LD24448.complete
Subject Subject Range Query Range Percent Splice Strand
X 14006193..14006865 171..843 100   Plus
X 14004452..14004621 1..170 100 -> Plus

LD24448.hyp Sequence

Translation from 236 to 691

> LD24448.hyp
MSSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGG
VFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQ
IRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAVE
D*

LD24448.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
ben-PE 151 CG18319-PE 1..151 1..151 792 100 Plus
ben-PD 151 CG18319-PD 1..151 1..151 792 100 Plus
ben-PB 151 CG18319-PB 1..151 1..151 792 100 Plus
ben-PC 151 CG18319-PC 1..151 1..151 792 100 Plus
ben-PA 151 CG18319-PA 1..151 1..151 792 100 Plus

LD24448.pep Sequence

Translation from 236 to 691

> LD24448.pep
MSSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGG
VFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQ
IRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAVE
D*

LD24448.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19231-PA 151 GF19231-PA 1..151 1..151 792 99.3 Plus
Dana\GF18131-PA 147 GF18131-PA 4..147 6..149 366 47.9 Plus
Dana\GF10262-PA 350 GF10262-PA 183..324 7..148 337 45.1 Plus
Dana\GF16080-PA 151 GF16080-PA 7..151 6..150 330 38.6 Plus
Dana\GF19392-PA 272 GF19392-PA 87..229 7..149 314 39.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17819-PA 151 GG17819-PA 1..151 1..151 794 100 Plus
Dere\GG24249-PA 151 GG24249-PA 1..149 1..149 667 81.2 Plus
Dere\GG21088-PA 147 GG21088-PA 4..147 6..149 366 47.9 Plus
Dere\GG24787-PA 169 GG24787-PA 20..169 2..151 358 48 Plus
Dere\GG11277-PA 151 GG11277-PA 7..151 6..150 330 38.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22592-PA 151 GH22592-PA 1..151 1..151 788 98.7 Plus
Dgri\GH17677-PA 151 GH17677-PA 1..151 1..151 787 98 Plus
Dgri\GH14086-PA 147 GH14086-PA 4..147 6..149 366 47.9 Plus
Dgri\GH15302-PA 151 GH15302-PA 7..151 6..150 330 38.6 Plus
Dgri\GH13340-PA 240 GH13340-PA 92..240 1..149 317 43.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
ben-PE 151 CG18319-PE 1..151 1..151 792 100 Plus
ben-PD 151 CG18319-PD 1..151 1..151 792 100 Plus
ben-PB 151 CG18319-PB 1..151 1..151 792 100 Plus
ben-PC 151 CG18319-PC 1..151 1..151 792 100 Plus
ben-PA 151 CG18319-PA 1..151 1..151 792 100 Plus
CG3473-PB 151 CG3473-PB 1..151 1..151 654 80.8 Plus
CG3473-PA 151 CG3473-PA 1..151 1..151 654 80.8 Plus
eff-PC 147 CG7425-PC 4..147 6..149 362 47.9 Plus
eff-PB 147 CG7425-PB 4..147 6..149 362 47.9 Plus
eff-PA 147 CG7425-PA 4..147 6..149 362 47.9 Plus
CG5440-PC 169 CG5440-PC 20..169 2..151 334 46 Plus
CG5440-PB 169 CG5440-PB 20..169 2..151 334 46 Plus
Ubc6-PC 151 CG2013-PC 7..136 6..135 333 43.1 Plus
Ubc6-PA 151 CG2013-PA 7..136 6..135 333 43.1 Plus
CG10862-PA 354 CG10862-PA 212..353 7..148 316 42.3 Plus
CG2574-PA 239 CG2574-PA 66..208 7..149 311 42 Plus
Ubc2-PD 232 CG6720-PD 89..231 6..148 309 45.5 Plus
Ubc2-PC 232 CG6720-PC 89..231 6..148 309 45.5 Plus
Ubc2-PB 232 CG6720-PB 89..231 6..148 309 45.5 Plus
Ubc2-PA 232 CG6720-PA 89..231 6..148 309 45.5 Plus
Ubc4-PC 199 CG8284-PC 43..153 39..148 300 52.3 Plus
Ubc4-PB 199 CG8284-PB 43..153 39..148 300 52.3 Plus
Ubc4-PA 199 CG8284-PA 43..153 39..148 300 52.3 Plus
vih-PA 178 CG10682-PA 32..158 3..129 292 43.3 Plus
UbcE2H-PB 183 CG2257-PB 34..152 35..151 268 42.9 Plus
UbcE2H-PC 183 CG2257-PC 34..152 35..151 268 42.9 Plus
UbcE2H-PA 183 CG2257-PA 34..152 35..151 268 42.9 Plus
CG8188-PD 209 CG8188-PD 17..159 6..148 262 33.6 Plus
CG8188-PC 209 CG8188-PC 17..159 6..148 262 33.6 Plus
CG8188-PB 209 CG8188-PB 17..159 6..148 262 33.6 Plus
CG8188-PA 209 CG8188-PA 17..159 6..148 262 33.6 Plus
CG40045-PA 168 CG40045-PA 1..162 1..146 255 31.5 Plus
morgue-PA 491 CG15437-PA 356..484 22..149 255 38.8 Plus
Ubc10-PA 154 CG5788-PA 4..148 5..148 245 32.7 Plus
Ubc87F-PA 168 CG9602-PA 1..151 1..135 245 33.1 Plus
CG40045-PD 167 CG40045-PD 1..161 1..146 243 31.5 Plus
Ubc7-PB 167 CG4443-PB 7..161 6..146 242 34.2 Plus
Ubc7-PA 167 CG4443-PA 7..161 6..146 242 34.2 Plus
CG7656-PF 317 CG7656-PF 39..181 2..130 239 33.6 Plus
CG7656-PA 317 CG7656-PA 39..181 2..130 239 33.6 Plus
CG7656-PE 319 CG7656-PE 39..181 2..130 239 33.6 Plus
CG7656-PD 319 CG7656-PD 39..181 2..130 239 33.6 Plus
Ubc84D-PA 153 CG12799-PA 5..148 6..148 234 30.6 Plus
UbcE2M-PC 181 CG7375-PC 49..163 27..142 222 34.5 Plus
UbcE2M-PB 181 CG7375-PB 49..163 27..142 222 34.5 Plus
UbcE2M-PA 181 CG7375-PA 49..163 27..142 222 34.5 Plus
CG14739-PA 206 CG14739-PA 16..141 6..133 213 36.2 Plus
CG40045-PC 132 CG40045-PC 12..126 45..146 208 32.2 Plus
lwr-PD 159 CG3018-PD 1..159 1..151 208 30.8 Plus
lwr-PC 159 CG3018-PC 1..159 1..151 208 30.8 Plus
lwr-PB 159 CG3018-PB 1..159 1..151 208 30.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22711-PA 151 GI22711-PA 1..151 1..151 788 98.7 Plus
Dmoj\GI21493-PA 151 GI21493-PA 1..151 1..151 785 98.7 Plus
Dmoj\GI10619-PA 147 GI10619-PA 4..147 6..149 366 47.9 Plus
Dmoj\GI21620-PA 382 GI21620-PA 123..265 7..149 333 42 Plus
Dmoj\GI22506-PA 151 GI22506-PA 7..151 6..150 330 38.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14825-PA 151 GL14825-PA 1..151 1..151 794 100 Plus
Dper\GL23670-PA 147 GL23670-PA 4..147 6..149 366 47.9 Plus
Dper\GL22213-PA 151 GL22213-PA 7..151 6..150 330 38.6 Plus
Dper\GL14576-PA 282 GL14576-PA 136..277 6..148 326 43.4 Plus
Dper\GL22516-PA 220 GL22516-PA 66..207 6..148 315 42 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14886-PA 151 GA14886-PA 1..151 1..151 794 100 Plus
Dpse\GA26693-PA 147 GA26693-PA 4..147 6..149 366 47.9 Plus
Dpse\GA15184-PA 151 GA15184-PA 7..151 6..150 330 38.6 Plus
Dpse\GA25195-PA 170 GA25195-PA 24..165 6..148 324 43.4 Plus
Dpse\GA19810-PA 228 GA19810-PA 85..228 6..149 315 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17649-PA 151 GM17649-PA 1..151 1..151 794 100 Plus
Dsec\GM16552-PA 151 GM16552-PA 1..150 1..150 658 80.7 Plus
Dsec\GM14762-PA 151 GM14762-PA 1..150 1..150 658 80.7 Plus
Dsec\GM25828-PA 147 GM25828-PA 4..147 6..149 366 47.9 Plus
Dsec\GM10669-PA 151 GM10669-PA 7..151 6..150 330 38.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17149-PA 151 GD17149-PA 1..151 1..151 794 100 Plus
Dsim\GD21999-PA 151 GD21999-PA 1..150 1..150 658 80.7 Plus
Dsim\GD20402-PA 147 GD20402-PA 4..147 6..149 366 47.9 Plus
Dsim\GD19645-PA 151 GD19645-PA 7..151 6..150 330 38.6 Plus
Dsim\GD23095-PA 164 GD23095-PA 24..164 6..146 322 46.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23435-PA 151 GJ23435-PA 1..151 1..151 788 98.7 Plus
Dvir\GJ19035-PA 151 GJ19035-PA 1..151 1..151 781 98 Plus
Dvir\GJ22971-PA 147 GJ22971-PA 4..147 6..149 366 47.9 Plus
Dvir\GJ10109-PA 151 GJ10109-PA 7..151 6..150 330 38.6 Plus
Dvir\GJ16559-PA 312 GJ16559-PA 99..241 7..149 330 41.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25846-PA 151 GK25846-PA 1..151 1..151 794 100 Plus
Dwil\GK21643-PA 151 GK21643-PA 1..151 1..151 675 80.8 Plus
Dwil\GK11688-PA 147 GK11688-PA 4..147 6..149 366 47.9 Plus
Dwil\GK14053-PA 151 GK14053-PA 7..151 6..150 330 38.6 Plus
Dwil\GK23983-PA 235 GK23983-PA 87..235 1..149 316 43.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17114-PA 151 GE17114-PA 1..151 1..151 794 100 Plus
Dyak\GE24917-PA 151 GE24917-PA 1..149 1..149 670 82.6 Plus
Dyak\eff-PA 147 GE26430-PA 4..147 6..149 366 47.9 Plus
Dyak\GE17550-PA 163 GE17550-PA 22..163 6..147 338 46.5 Plus
Dyak\GE25319-PA 151 GE25319-PA 7..151 6..150 330 38.6 Plus