Clone LD24449 Report

Search the DGRC for LD24449

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:244
Well:49
Vector:pOT2
Associated Gene/TranscriptPgant35A-RA
Protein status:LD24449.pep: gold
Preliminary Size:2131
Sequenced Size:2093

Clone Sequence Records

LD24449.complete Sequence

2093 bp assembled on 2011-05-26

GenBank Submission: BT128701.1

> LD24449.complete
ACAAAGTAGCTGCTTAAGTAGCCAGGGAAGCGCACAACGTAATCTAATCT
CGATCCATGATGCAAATCAAGCGCCTCCTGTGCAAATCCTGCGGCCTGGG
CACCCTTCTGGTGGCGGTCGTCTGGCTGCTGGCGCTGCTTTTCTACTCGC
ACAGCCTGCGCAGCTCCATCCGCTCGGCAGGATGGAGGATCGACGAAGGG
AACGCAACGCCACGGGCCGAGCTGAGCTACCAGGCCAGGGTCACCGTCGG
ATGCACTCCAAATGCCAGCATTACCACTGGCGAATCGCCGGCGGCACCCA
AGCCGCCCAGTGATCCGGAGCAATTGGAACTGTTGGGTGTGGTGCGCAAC
AAGCAGGACAAGTACATACGCGACATTGGCTACAAGCATCACGCCTTCAA
CGCGCTGGTGTCCAATAACATAGGACTCTTCCGGGCGATCCCAGACACTC
GGCACAAGGTGTGCGATCGCCAGGAGACCACGGAAGCGGAAAATCTGCCC
CAGGCCTCCATAGTCATGTGCTTCTACAACGAGCACAAGATGACGCTGAT
GCGCTCGATTAAGACCGTGCTGGAACGCACGCCCAGCTACCTGCTGCGCG
AGATTATTCTGGTGGATGATCACAGCGATCTTCCAGAATTGGAATTCCAT
TTGCACGGGGATCTGCGTGCCCGCCTGAAGTACGACAACCTGCGGTACAT
CAAAAACGAGCAGCGCGAGGGTCTCATTCGTTCCCGGGTCATTGGTGCAC
GCGAGGCCGTGGGCGATGTGCTCGTCTTCCTCGACTCGCATATCGAGGTC
AATCAGCAGTGGCTGGAGCCGCTGCTGCGCCTCATCAAGTCGGAGAACGC
CACTCTGGCCGTGCCCGTCATCGACCTGATCAACGCTGATACCTTTGAGT
ACACGCCCAGTCCACTGGTGCGCGGAGGATTCAACTGGGGCCTGCACTTC
CGCTGGGAGAATCTGCCCGAGGGCACGCTCAAGGTGCCGGAGGATTTTCG
CGGACCCTTCCGTTCGCCCACCATGGCCGGCGGATTGTTTGCCGTGAACA
GGAAGTACTTCCAGCATCTGGGCGAGTACGACATGGCCATGGATATATGG
GGTGGCGAGAATATAGAGATCTCCTTCAGAGCCTGGCAATGCGGTGGCGC
CATTAAGATCGTTCCCTGCTCCCGTGTCGGTCACATATTCCGCAAACGAC
GTCCGTACACTTCGCCAGATGGAGCCAACACCATGTTGAAGAACTCACTG
CGTTTGGCGCACGTCTGGATGGATCAGTACAAGGATTACTATCTCAAGCA
CGAAAAGGTGCCCAAGACCTATGATTATGGAGACATTAGCGATCGCCTCA
AGCTTAGGGAGCGTCTGCAGTGCAGGGACTTTGCCTGGTATCTAAAGAAT
GTCTATCCAGAGCTGCATGTGCCGGGCGAGGAGTCCAAGAAGTCGGCGGC
AGCGCCCATCTTTCAGCCTTGGCACTCGCGAAAACGTAACTATGTCGACA
CATTCCAGCTGCGACTGACGGGAACGGAGCTCTGTGCCGCCGTGGTGGCT
CCCAAGGTGAAGGGTTTCTGGAAGAAGGGCAGCTCCCTGCAATTGCAAAC
CTGCCGAAGGACACCCAATCAACTGTGGTACGAAACGGAGAAGGCGGAAA
TTGTGCTGGACAAGTTGCTGTGCCTGGAGGCATCCGGGGATGCGCAGGTC
ACGGTCAACAAGTGCCACGAGATGCTCGGCGATCAGCAGTGGCGGCACAC
CCGCAACGCCAACAGTCCCGTCTACAACATGGCCAAAGGCACCTGCCTCC
GGGCAGCTGCTCCCACGACGGGCGCCCTCATCAGTCTGGATCTGTGCTCC
AAGTCCAACGGAGCGGGCGGCTCCTGGGACATTGTGCAGCTGAAGAAGCC
AACGGAGGCGGAGGGCAGGGCCAAGGAGGCGAGGAACTCGGACAAGGCGC
TGTGAGCGATTCGCTCGGATCGAATAATTCCGATTGCAATATTAGACTGA
TAACTGTTTAGGGCAAAGTGTATTATGTTTAAATAGCCAGTATTTTTTCA
TCAAACTTTTTTTTTTTAATAAATATGATCAAAATGTTAAAAA

LD24449.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14358125..14360212 1..2088 10440 100 Plus
chr2L 23010047 chr2L 3406222..3406377 1210..1055 225 76.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14359324..14361411 1..2088 10440 100 Plus
2L 23513712 2L 3406586..3406741 1210..1055 225 76.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14359324..14361411 1..2088 10440 100 Plus
2L 23513712 2L 3406586..3406741 1210..1055 225 76.2 Minus
Blast to na_te.dros performed 2019-03-17 01:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 6682..6722 664..704 115 75.6 Plus

LD24449.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:02:46 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14358125..14360212 1..2088 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-05-26 11:12:21 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
Pgant35A-RA 1..1899 57..1955 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:21:26 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
Pgant35A-RA 1..1899 57..1955 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:42:42 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
Pgant35A-RA 1..1899 57..1955 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-05-26 11:12:20 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
Pgant35A-RA 107..2194 1..2088 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:21:26 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
Pgant35A-RA 73..2160 1..2088 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:42:42 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
Pgant35A-RA 73..2160 1..2088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:02:46 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14359324..14361411 1..2088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:02:46 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14359324..14361411 1..2088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:02:46 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14359324..14361411 1..2088 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:21:26 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14359324..14361411 1..2088 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:07:13 Download gff for LD24449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14359324..14361411 1..2088 100   Plus

LD24449.pep Sequence

Translation from 56 to 1954

> LD24449.pep
MMQIKRLLCKSCGLGTLLVAVVWLLALLFYSHSLRSSIRSAGWRIDEGNA
TPRAELSYQARVTVGCTPNASITTGESPAAPKPPSDPEQLELLGVVRNKQ
DKYIRDIGYKHHAFNALVSNNIGLFRAIPDTRHKVCDRQETTEAENLPQA
SIVMCFYNEHKMTLMRSIKTVLERTPSYLLREIILVDDHSDLPELEFHLH
GDLRARLKYDNLRYIKNEQREGLIRSRVIGAREAVGDVLVFLDSHIEVNQ
QWLEPLLRLIKSENATLAVPVIDLINADTFEYTPSPLVRGGFNWGLHFRW
ENLPEGTLKVPEDFRGPFRSPTMAGGLFAVNRKYFQHLGEYDMAMDIWGG
ENIEISFRAWQCGGAIKIVPCSRVGHIFRKRRPYTSPDGANTMLKNSLRL
AHVWMDQYKDYYLKHEKVPKTYDYGDISDRLKLRERLQCRDFAWYLKNVY
PELHVPGEESKKSAAAPIFQPWHSRKRNYVDTFQLRLTGTELCAAVVAPK
VKGFWKKGSSLQLQTCRRTPNQLWYETEKAEIVLDKLLCLEASGDAQVTV
NKCHEMLGDQQWRHTRNANSPVYNMAKGTCLRAAAPTTGALISLDLCSKS
NGAGGSWDIVQLKKPTEAEGRAKEARNSDKAL*

LD24449.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14884-PA 627 GF14884-PA 1..623 1..631 2927 86.9 Plus
Dana\GF15680-PA 630 GF15680-PA 153..630 94..568 971 41.4 Plus
Dana\GF13455-PA 688 GF13455-PA 170..655 106..581 931 39.8 Plus
Dana\GF15722-PA 675 GF15722-PA 150..661 109..602 835 36.2 Plus
Dana\GF13042-PA 599 GF13042-PA 109..465 109..456 782 44.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25115-PA 634 GG25115-PA 1..634 2..632 3337 97.3 Plus
Dere\GG24441-PA 631 GG24441-PA 154..631 94..568 978 42 Plus
Dere\GG24317-PA 630 GG24317-PA 150..619 109..607 897 39.3 Plus
Dere\GG22251-PA 721 GG22251-PA 167..517 106..458 893 47.2 Plus
Dere\GG20529-PA 601 GG20529-PA 111..470 109..459 778 43.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11345-PA 620 GH11345-PA 1..608 1..613 2729 80.8 Plus
Dgri\GH11183-PA 640 GH11183-PA 163..640 94..568 970 40.6 Plus
Dgri\GH22705-PA 693 GH22705-PA 177..660 106..581 904 39.2 Plus
Dgri\GH11491-PA 621 GH11491-PA 141..607 109..602 902 38.8 Plus
Dgri\GH20244-PA 599 GH20244-PA 95..469 92..461 783 42.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pgant35A-PA 632 CG7480-PA 1..632 1..632 3360 100 Plus
Pgant2-PB 633 CG3254-PB 156..627 94..562 953 42.3 Plus
Pgant2-PA 633 CG3254-PA 156..627 94..562 953 42.3 Plus
CG30463-PD 650 CG30463-PD 168..617 106..581 911 41.2 Plus
CG30463-PA 650 CG30463-PA 168..617 106..581 911 41.2 Plus
CG30463-PC 647 CG30463-PC 168..614 106..581 896 40 Plus
CG30463-PB 647 CG30463-PB 168..614 106..581 896 40 Plus
Pgant5-PA 630 CG31651-PA 150..619 109..607 872 39.1 Plus
Pgant5-PB 630 CG31651-PB 150..619 109..607 863 38.9 Plus
Pgant1-PB 601 CG8182-PB 97..470 90..459 769 42.6 Plus
Pgant1-PA 601 CG8182-PA 97..470 90..459 769 42.6 Plus
Pgant4-PC 644 CG31956-PC 128..621 96..601 725 35.2 Plus
Pgant4-PB 644 CG31956-PB 128..621 96..601 725 35.2 Plus
Pgant3-PA 667 CG4445-PA 99..466 95..459 724 40.9 Plus
Pgant6-PC 666 CG2103-PC 168..603 112..562 713 36.3 Plus
Pgant6-PB 666 CG2103-PB 168..603 112..562 713 36.3 Plus
Pgant6-PA 666 CG2103-PA 168..603 112..562 713 36.3 Plus
Pgant7-PC 591 CG6394-PC 75..451 78..449 696 39.6 Plus
Pgant7-PB 591 CG6394-PB 75..451 78..449 696 39.6 Plus
Pgant7-PA 591 CG6394-PA 75..451 78..449 696 39.6 Plus
Pgant1-PC 384 CG8182-PC 4..253 220..459 625 49.2 Plus
CG10000-PA 558 CG10000-PA 73..432 112..459 612 37.8 Plus
Pgant8-PA 590 CG7297-PA 81..565 88..601 607 32 Plus
CG31776-PA 630 CG31776-PA 135..609 114..600 599 34.4 Plus
CG7579-PA 498 CG7579-PA 16..465 112..593 527 29.5 Plus
CG7304-PB 563 CG7304-PB 64..542 101..602 481 27.1 Plus
CG30463-PE 264 CG30463-PE 1..231 323..581 478 39.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12891-PA 622 GI12891-PA 1..615 1..619 2772 80.7 Plus
Dmoj\GI15842-PA 628 GI15842-PA 151..628 94..568 984 41.9 Plus
Dmoj\GI18492-PA 670 GI18492-PA 188..637 106..581 926 41.2 Plus
Dmoj\GI16986-PA 633 GI16986-PA 153..619 109..602 911 40 Plus
Dmoj\GI19414-PA 604 GI19414-PA 112..474 109..461 794 44.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21271-PA 364 GL21271-PA 1..246 2..252 1097 80.5 Plus
Dper\GL19517-PA 638 GL19517-PA 134..638 75..568 969 40.2 Plus
Dper\GL11821-PA 658 GL11821-PA 176..642 106..600 944 41.7 Plus
Dper\GL18803-PA 630 GL18803-PA 150..619 109..607 901 39.2 Plus
Dper\GL20074-PA 597 GL20074-PA 104..466 106..459 787 44.2 Plus
Dper\GL21271-PA 364 GL21271-PA 241..363 500..622 570 82.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20382-PA 617 GA20382-PA 1..616 2..622 2930 84.7 Plus
Dpse\GA16973-PA 639 GA16973-PA 135..639 75..568 969 40.2 Plus
Dpse\GA25136-PA 658 GA25136-PA 176..642 106..600 943 41.7 Plus
Dpse\GA16368-PA 630 GA16368-PA 150..619 109..607 903 39.2 Plus
Dpse\GA20875-PA 597 GA20875-PA 104..466 106..459 786 44.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15572-PA 604 GM15572-PA 1..604 2..632 3155 93.5 Plus
Dsec\GM18147-PA 606 GM18147-PA 142..606 108..568 949 42 Plus
Dsec\GM20039-PA 650 GM20039-PA 168..634 106..600 921 40.3 Plus
Dsec\GM18035-PA 630 GM18035-PA 150..619 109..607 894 39.1 Plus
Dsec\GM21620-PA 601 GM21620-PA 111..470 109..459 789 44.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23962-PA 635 GD23962-PA 1..635 1..632 3357 98 Plus
Dsim\GD22759-PA 633 GD22759-PA 156..633 94..568 975 42 Plus
Dsim\GD25523-PA 650 GD25523-PA 168..634 106..600 924 40.5 Plus
Dsim\GD11982-PA 541 GD11982-PA 19..530 109..607 834 35.7 Plus
Dsim\GD11122-PA 601 GD11122-PA 111..470 109..459 790 44.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18184-PA 625 GJ18184-PA 1..609 1..612 2745 82.4 Plus
Dvir\GJ10330-PA 631 GJ10330-PA 154..631 94..568 966 41 Plus
Dvir\GJ21354-PA 693 GJ21354-PA 178..660 106..581 924 39.6 Plus
Dvir\GJ24116-PA 632 GJ24116-PA 152..618 109..602 899 39.6 Plus
Dvir\GJ22477-PA 598 GJ22477-PA 92..468 90..461 784 42.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18112-PA 588 GK18112-PA 2..587 34..618 2677 83 Plus
Dwil\GK14594-PA 635 GK14594-PA 158..635 94..568 978 41.6 Plus
Dwil\GK10725-PA 644 GK10725-PA 78..611 33..581 928 38.8 Plus
Dwil\GK23729-PA 677 GK23729-PA 152..663 109..602 843 36.4 Plus
Dwil\GK10658-PA 489 GK10658-PA 102..482 83..458 780 41.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19032-PA 635 GE19032-PA 1..635 1..632 3299 95.9 Plus
Dyak\GE14879-PA 634 GE14879-PA 157..634 94..568 978 42 Plus
Dyak\GE14045-PA 684 GE14045-PA 168..668 106..600 923 39.1 Plus
Dyak\GE18697-PA 675 GE18697-PA 150..664 109..607 835 36.1 Plus
Dyak\GE11714-PA 601 GE11714-PA 108..470 106..459 788 44.2 Plus

LD24449.hyp Sequence

Translation from 56 to 1954

> LD24449.hyp
MMQIKRLLCKSCGLGTLLVAVVWLLALLFYSHSLRSSIRSAGWRIDEGNA
TPRAELSYQARVTVGCTPNASITTGESPAAPKPPSDPEQLELLGVVRNKQ
DKYIRDIGYKHHAFNALVSNNIGLFRAIPDTRHKVCDRQETTEAENLPQA
SIVMCFYNEHKMTLMRSIKTVLERTPSYLLREIILVDDHSDLPELEFHLH
GDLRARLKYDNLRYIKNEQREGLIRSRVIGAREAVGDVLVFLDSHIEVNQ
QWLEPLLRLIKSENATLAVPVIDLINADTFEYTPSPLVRGGFNWGLHFRW
ENLPEGTLKVPEDFRGPFRSPTMAGGLFAVNRKYFQHLGEYDMAMDIWGG
ENIEISFRAWQCGGAIKIVPCSRVGHIFRKRRPYTSPDGANTMLKNSLRL
AHVWMDQYKDYYLKHEKVPKTYDYGDISDRLKLRERLQCRDFAWYLKNVY
PELHVPGEESKKSAAAPIFQPWHSRKRNYVDTFQLRLTGTELCAAVVAPK
VKGFWKKGSSLQLQTCRRTPNQLWYETEKAEIVLDKLLCLEASGDAQVTV
NKCHEMLGDQQWRHTRNANSPVYNMAKGTCLRAAAPTTGALISLDLCSKS
NGAGGSWDIVQLKKPTEAEGRAKEARNSDKAL*

LD24449.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pgant35A-PA 632 CG7480-PA 1..632 1..632 3360 100 Plus
pgant2-PB 633 CG3254-PB 156..627 94..562 953 42.3 Plus
pgant2-PA 633 CG3254-PA 156..627 94..562 953 42.3 Plus
CG30463-PD 650 CG30463-PD 168..617 106..581 911 41.2 Plus
CG30463-PA 650 CG30463-PA 168..617 106..581 911 41.2 Plus