Clone LD24467 Report

Search the DGRC for LD24467

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:244
Well:67
Vector:pOT2
Associated Gene/TranscriptSpn27A-RA
Protein status:LD24467.pep: gold
Preliminary Size:1300
Sequenced Size:1552

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11331 2001-01-01 Release 2 assignment
CG11331 2003-01-01 Sim4 clustering to Release 3
CG11331 2003-02-17 Blastp of sequenced clone
Spn27A 2008-04-29 Release 5.5 accounting
Spn27A 2008-08-15 Release 5.9 accounting
Spn27A 2008-12-18 5.12 accounting

Clone Sequence Records

LD24467.complete Sequence

1552 bp (1552 high quality bases) assembled on 2003-02-17

GenBank Submission: BT004486

> LD24467.complete
TGAAACGGTTATCGCTCGCTCCACCGGCGCTCTCTCGCCGCTCGCCCCAC
CAAAGCCCGCATTTAACAGTTGTTTTGCTGCGAATAAGAGGCTGAAAGCA
AAGACCCGAGGAAGATCGAGACGCAGAAGCTTAGGGAAGCACAGATGACA
AAGATGGGCGGAAATTTGGCAGTGATGCTGCTGTCGCTGTTTTTGAGTGC
GTTAGCCACGGGCAACGGCAACTCCATACCGACGACCACGACGCCCCAGG
GCGTATTCGAAACCCGTACGGACAAGCTGCCCGGTGGCGCTGCCAGCGTG
CCCAGTGGAGCGGGTATCTACGACGATATAGATACCTTTGTGCCCTTCCG
GAGCGACTCGCACGATCCGTTCTCATGGCATCTACTGAAGACGGTGCTGC
AGAACGAGACAGCCGACAAGAATGTGATCATCTCGCCGTTCTCCGTCAAA
CTGGTGCTGGCCCTGCTGGCTGAGGCGGCCGGAGCCGGAACCCAGACGCA
AGTGGAGCTGGCCAACACGCAAACAGACATTCGATCGCAAAATAATGTGC
GGGAGTTCTACCGCAAGACACTTAATTCCTTCAAGAAGGAGAACCAGCTC
CACGAGACGCTCAGTGTGCGCACCAAGCTCTTCACGGACAGCTTCATCGA
GACACAGCAGAAGTTCACGGCCACGCTGAAACACTTCTACGACAGCGAGG
TGGAGGCGCTAGACTTCACCAATCCCGAGGCGGCGGCAGATGCCATCAAC
GCCTGGGCCGCCAACATCACGCAGGGCAGACTTCAGCAGCTAGTAGCCCC
GGACAACGTGCGCAGCAGCGTAATGTTGCTGACCAATCTGATCTACTTCA
ACGGTCTGTGGCGGCGGCAGTTTGCCACCACATTCCAGGGATCCTTCTTC
CGCAGCAAGGACGACCAGTCGCGGGCGGAGTTCATGGAGCAGACCGACTA
CTTCTACTACACCACCTCGGAGAAGCTGAAGGCGCAGATTCTGCGTCTGC
CCTACAAGGGCAAGAACTCCCTGTTCGTCCTGCTGCCCTACGCCCTGAAT
GGCATCCATGACTTGGTCAAGAACCTGGAAAACGACGAGCTAAAGAGCGC
TCAGTGGGCCATGGAGGAGGTGAAAGTGAAGGTGACGCTGCCCAAGTTCC
ATTTCGACTACCAGCAGAACCTTAAGGAGACGTTGCGCAGCCTGGGTGTG
CGCGAAATCTTTGAGGACAGCGCCTCGCTGCCGGGATTAACCCGCGGCGC
TGATGTCGCCGGCAAAGTAAAGGTGTCTAACATCCTGCAGAAGGCCGGCA
TTAATGTGAACGAGAAGGGAACGGAGGCCTACGCAGCCACCGTTGTGGAG
ATCGAAAACAAGTTCGGTGGCAGCACCGCCATCGAGGAATTCAACGTAAA
CCGGCCGTTTGTGTTCTTTATCGAGGAGGAGTCCACTGGTAACATACTGT
TTGCCGGCAAAGTCCACTCACCCACCACCCAGAACTAAGCCTCTCAGGCG
GTTTTATCTTTAAATACGCAATAAATATACAAACAAAAAAAAAAAAAAAA
AA

LD24467.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Spn27A-RA 1567 Spn27A-RA 26..1562 1..1537 7685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6670846..6672379 1534..1 7670 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6671783..6673319 1537..1 7685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6671783..6673319 1537..1 7685 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:26:12 has no hits.

LD24467.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:25 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6670846..6672379 1..1534 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:33 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 1..1344 145..1488 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:55 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 1..1344 145..1488 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:32 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 1..1344 145..1488 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:11 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 1..1344 145..1488 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:48 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 1..1344 145..1488 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:02:46 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 26..1559 1..1534 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:55 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 26..1559 1..1534 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:32 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 29..1562 1..1534 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:11 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 26..1559 1..1534 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:48 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 29..1562 1..1534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:25 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6671786..6673319 1..1534 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:25 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6671786..6673319 1..1534 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:25 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6671786..6673319 1..1534 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:32 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6671786..6673319 1..1534 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:41 Download gff for LD24467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6671786..6673319 1..1534 100   Minus

LD24467.pep Sequence

Translation from 144 to 1487

> LD24467.pep
MTKMGGNLAVMLLSLFLSALATGNGNSIPTTTTPQGVFETRTDKLPGGAA
SVPSGAGIYDDIDTFVPFRSDSHDPFSWHLLKTVLQNETADKNVIISPFS
VKLVLALLAEAAGAGTQTQVELANTQTDIRSQNNVREFYRKTLNSFKKEN
QLHETLSVRTKLFTDSFIETQQKFTATLKHFYDSEVEALDFTNPEAAADA
INAWAANITQGRLQQLVAPDNVRSSVMLLTNLIYFNGLWRRQFATTFQGS
FFRSKDDQSRAEFMEQTDYFYYTTSEKLKAQILRLPYKGKNSLFVLLPYA
LNGIHDLVKNLENDELKSAQWAMEEVKVKVTLPKFHFDYQQNLKETLRSL
GVREIFEDSASLPGLTRGADVAGKVKVSNILQKAGINVNEKGTEAYAATV
VEIENKFGGSTAIEEFNVNRPFVFFIEEESTGNILFAGKVHSPTTQN*

LD24467.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14458-PA 452 GF14458-PA 27..451 25..446 1852 85.2 Plus
Dana\GF11691-PA 374 GF11691-PA 31..368 93..438 388 32.9 Plus
Dana\GF13145-PA 438 GF13145-PA 31..375 92..439 354 28.9 Plus
Dana\GF13146-PA 360 GF13146-PA 12..359 85..443 345 31.6 Plus
Dana\GF12698-PA 390 GF12698-PA 30..387 76..440 343 27.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23599-PA 446 GG23599-PA 1..446 1..447 2057 95.3 Plus
Dere\GG21843-PA 374 GG21843-PA 30..368 92..438 409 33.9 Plus
Dere\GG23463-PA 372 GG23463-PA 24..371 84..443 364 28.4 Plus
Dere\GG10764-PA 473 GG10764-PA 94..458 74..444 363 29.6 Plus
Dere\GG23230-PA 372 GG23230-PA 24..372 84..443 361 28.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13574-PA 451 GH13574-PA 19..451 23..444 1690 73.9 Plus
Dgri\GH20251-PA 377 GH20251-PA 30..374 92..443 362 30.6 Plus
Dgri\GH21519-PA 384 GH21519-PA 24..381 76..440 337 28 Plus
Dgri\GH19862-PA 382 GH19862-PA 35..378 93..439 331 28.9 Plus
Dgri\GH18180-PA 386 GH18180-PA 24..378 91..446 330 30.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Spn27A-PB 447 CG11331-PB 1..447 1..447 2276 100 Plus
Spn27A-PA 447 CG11331-PA 1..447 1..447 2276 100 Plus
Spn55B-PA 374 CG10913-PA 30..368 92..438 409 32.4 Plus
Spn42Dd-PB 372 CG9456-PB 24..372 84..443 389 29.7 Plus
Spn38F-PA 372 CG9334-PA 21..370 81..443 389 29.2 Plus
Spn38F-PB 370 CG9334-PB 21..368 81..443 382 28.6 Plus
nec-PA 476 CG1857-PA 108..472 74..444 379 30.4 Plus
Spn28F-PA 375 CG8137-PA 24..373 84..443 354 26.9 Plus
Spn42Dc-PB 403 CG9455-PB 26..380 86..443 350 29.2 Plus
Spn42Dc-PA 403 CG9455-PA 26..380 86..443 350 29.2 Plus
Spn42Da-PG 379 CG9453-PG 24..376 85..440 347 29 Plus
Spn42Da-PD 411 CG9453-PD 56..408 85..440 347 29 Plus
Spn42Da-PL 379 CG9453-PL 24..377 85..441 345 28.3 Plus
Spn42Da-PK 379 CG9453-PK 24..377 85..441 345 28.3 Plus
Spn42Da-PH 379 CG9453-PH 24..377 85..441 345 28.3 Plus
Spn42Da-PF 411 CG9453-PF 56..409 85..441 345 28.3 Plus
Spn42Da-PE 411 CG9453-PE 56..409 85..441 345 28.3 Plus
Spn42Da-PJ 374 CG9453-PJ 24..360 85..427 340 28.5 Plus
Spn42De-PB 386 CG9460-PB 25..383 85..440 340 27.1 Plus
Spn42De-PA 404 CG9460-PA 43..401 85..440 340 27.1 Plus
Spn42Da-PI 406 CG9453-PI 56..392 85..427 340 28.5 Plus
Spn43Aa-PA 390 CG12172-PA 30..387 76..440 337 26.4 Plus
Spn28Da-PB 384 CG31902-PB 17..372 76..443 336 27 Plus
Spn42Da-PA 392 CG9453-PA 24..363 85..426 333 28.1 Plus
Spn42Da-PB 424 CG9453-PB 56..395 85..426 333 28.1 Plus
Spn28B-PB 378 CG6717-PB 18..376 78..443 324 25.5 Plus
Spn28B-PA 378 CG6717-PA 18..376 78..443 324 25.5 Plus
Spn42Db-PC 388 CG9454-PC 25..377 89..446 318 28.8 Plus
Spn88Eb-PA 426 CG6687-PA 41..421 76..443 305 29.1 Plus
Spn88Ea-PB 427 CG18525-PB 50..424 84..445 301 26.9 Plus
Spn88Ea-PA 427 CG18525-PA 50..424 84..445 301 26.9 Plus
Spn47C-PC 382 CG7722-PC 6..382 64..443 289 25.8 Plus
Spn47C-PB 382 CG7722-PB 6..382 64..443 289 25.8 Plus
Spn47C-PA 382 CG7722-PA 6..382 64..443 289 25.8 Plus
Spn77Ba-PC 450 CG6680-PC 65..447 61..443 282 27.7 Plus
Spn77Ba-PB 450 CG6680-PB 65..447 61..443 282 27.7 Plus
Spn77Ba-PA 450 CG6680-PA 65..447 61..443 282 27.7 Plus
Spn28Db-PB 377 CG33121-PB 23..368 76..440 246 23.8 Plus
Spn43Ab-PB 393 CG1865-PB 30..387 79..440 238 24.2 Plus
Spn100A-PA 649 CG1342-PA 379..631 199..443 233 26.1 Plus
Spn28Dc-PA 536 CG7219-PA 182..532 116..443 230 24 Plus
Spn31A-PA 382 CG4804-PA 27..371 90..430 218 23.7 Plus
Spn42Db-PD 286 CG9454-PD 25..282 89..347 207 26.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24139-PA 434 GI24139-PA 13..433 25..443 1706 75.3 Plus
Dmoj\GI19420-PA 376 GI19420-PA 30..376 92..445 394 31.5 Plus
Dmoj\GI20049-PA 503 GI20049-PA 137..500 76..447 362 31 Plus
Dmoj\GI11773-PA 405 GI11773-PA 64..402 89..440 347 30 Plus
Dmoj\GI19487-PA 384 GI19487-PA 24..381 76..440 343 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25590-PA 447 GL25590-PA 19..445 17..443 1991 86.9 Plus
Dper\GL10534-PA 376 GL10534-PA 30..376 92..445 424 33.1 Plus
Dper\GL10964-PA 379 GL10964-PA 21..375 85..440 384 30.2 Plus
Dper\GL11125-PA 404 GL11125-PA 6..381 71..444 365 28.9 Plus
Dper\GL11156-PA 390 GL11156-PA 12..387 48..440 360 28.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10926-PA 447 GA10926-PA 19..445 17..443 1991 86.9 Plus
Dpse\GA10637-PA 376 GA10637-PA 30..376 92..445 416 32.8 Plus
Dpse\GA24549-PA 379 GA24549-PA 21..375 85..440 380 30.2 Plus
Dpse\GA24617-PA 375 GA24617-PA 19..375 77..443 379 29.3 Plus
Dpse\GA11452-PA 390 GA11452-PA 12..387 48..440 362 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14001-PA 431 GM14001-PA 1..431 1..447 2215 94.6 Plus
Dsec\GM21844-PA 374 GM21844-PA 30..368 92..438 388 32.2 Plus
Dsec\GM20904-PA 372 GM20904-PA 24..372 84..443 382 29.4 Plus
Dsec\GM20812-PA 469 GM20812-PA 101..465 74..444 364 30.3 Plus
Dsec\GM20903-PA 403 GM20903-PA 26..382 86..445 343 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22555-PA 447 GD22555-PA 1..447 1..447 2341 98.7 Plus
Dsim\GD11338-PA 374 GD11338-PA 30..368 92..438 396 33.1 Plus
Dsim\GD10430-PA 403 GD10430-PA 26..382 86..445 349 29.4 Plus
Dsim\nec-PA 460 GD10269-PA 106..456 74..444 344 29.7 Plus
Dsim\GD10459-PA 390 GD10459-PA 30..387 76..440 324 27.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21412-PA 443 GJ21412-PA 11..443 17..444 1757 76.9 Plus
Dvir\GJ17545-PA 407 GJ17545-PA 6..379 71..443 381 29.7 Plus
Dvir\GJ22484-PA 376 GJ22484-PA 30..375 92..444 376 31.6 Plus
Dvir\GJ15151-PA 387 GJ15151-PA 27..384 76..440 343 28.2 Plus
Dvir\GJ18486-PA 377 GJ18486-PA 35..374 93..439 317 29.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18897-PA 446 GK18897-PA 15..443 23..443 1784 78.5 Plus
Dwil\GK22245-PA 374 GK22245-PA 30..374 92..443 388 32.5 Plus
Dwil\GK20758-PA 404 GK20758-PA 53..400 91..443 373 30.9 Plus
Dwil\GK20759-PA 401 GK20759-PA 53..400 91..446 354 27.8 Plus
Dwil\GK20756-PA 361 GK20756-PA 38..344 91..399 346 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18418-PA 446 GE18418-PA 1..446 1..447 2313 97.8 Plus
Dyak\GE11922-PA 374 GE11922-PA 30..368 92..438 399 33.3 Plus
Dyak\nec-PA 469 GE24169-PA 89..453 74..444 392 30.9 Plus
Dyak\GE19081-PA 374 GE19081-PA 24..374 84..443 356 28.2 Plus
Dyak\GE11098-PA 375 GE11098-PA 24..374 84..443 345 27.4 Plus

LD24467.hyp Sequence

Translation from 144 to 1487

> LD24467.hyp
MTKMGGNLAVMLLSLFLSALATGNGNSIPTTTTPQGVFETRTDKLPGGAA
SVPSGAGIYDDIDTFVPFRSDSHDPFSWHLLKTVLQNETADKNVIISPFS
VKLVLALLAEAAGAGTQTQVELANTQTDIRSQNNVREFYRKTLNSFKKEN
QLHETLSVRTKLFTDSFIETQQKFTATLKHFYDSEVEALDFTNPEAAADA
INAWAANITQGRLQQLVAPDNVRSSVMLLTNLIYFNGLWRRQFATTFQGS
FFRSKDDQSRAEFMEQTDYFYYTTSEKLKAQILRLPYKGKNSLFVLLPYA
LNGIHDLVKNLENDELKSAQWAMEEVKVKVTLPKFHFDYQQNLKETLRSL
GVREIFEDSASLPGLTRGADVAGKVKVSNILQKAGINVNEKGTEAYAATV
VEIENKFGGSTAIEEFNVNRPFVFFIEEESTGNILFAGKVHSPTTQN*

LD24467.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Spn27A-PB 447 CG11331-PB 1..447 1..447 2276 100 Plus
Spn27A-PA 447 CG11331-PA 1..447 1..447 2276 100 Plus
Spn55B-PA 374 CG10913-PA 30..368 92..438 409 32.4 Plus
Spn42Dd-PB 372 CG9456-PB 24..372 84..443 389 29.7 Plus
Spn38F-PA 372 CG9334-PA 21..370 81..443 389 29.2 Plus