Clone LD24478 Report

Search the DGRC for LD24478

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:244
Well:78
Vector:pOT2
Associated Gene/TranscriptCG7332-RA
Protein status:LD24478.pep: gold
Preliminary Size:2200
Sequenced Size:2139

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7332 2001-01-01 Release 2 assignment
CG7332 2001-09-19 Blastp of sequenced clone
CG7332 2003-01-01 Sim4 clustering to Release 3
CG7332 2008-04-29 Release 5.5 accounting
CG7332 2008-08-15 Release 5.9 accounting
CG7332 2008-12-18 5.12 accounting

Clone Sequence Records

LD24478.complete Sequence

2139 bp (2139 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058544

> LD24478.complete
CCAAATAACGCCTCCTGCTATCGATATCAATCAAGAAAAAATAAAATTTA
TTAAATAGATTTGTACATAGGAAATCGGGTGACGCGAAGCGAATAACATC
TGGTCTAGCCAAAAATGCCAACCAAGTTGGTGGGCTAAAAGAGTGAATCC
GAAATCGAGGACTAGGAGCAGCAGAAGGAGTAGGAGCTGACCACCAGTGG
AGGAGCGACCGTGCGAACGAGCGAGCAAACGGAGCGGAGCAGAGCAGTAA
AAGCAGTGCAGCCGTTGATTTCATCGGAGATGAACGAGAAAATCGTGCGG
GAGCAGCGCGGCGGCGAAGATTCCCCATCCTCCGTCTCGGCGAAAAGTGC
AACGGCAGCGGCGTCAGCGTCGACAGCGTCGATGACGTTTGCCTCGGCGG
CCTTGGAATCGCACAAGACGACCACCATCACGACCGCCAGCAGCAGCCCT
CGCACCAGTGGAGCAAGTGCATCCGCCTCGTCATCCTCTCGATCCGCATC
TGCACCTGCATCGTCGTCCAGCCAGCAGGAAAAGCAACCGATGCTGAATG
CCACCGATATGCGCGAACTGCGCGAAATCAAGCAGTTGCTGTGGGGCGAC
AATGTGCGCGAAGATGTATTCAAGCGTTGGTCTCAAGGATTCGAGTTTAG
TAAAGTGGAACCGTCTGCATTGGTGCAGAAGCAGGGCGGTCCTTGTGCTG
TGATAGCGCCGGTGCAGGCGTACTTGCTTAAGATTATTATCATGGACTTG
CCAGGCATCAAGCTCTCGGAGATTTCCCTCGACAAATCGCAGAACCTGCT
GATCCAGGCATTGTGTGACATCCTGAAGAATTGTCGGGCGCCGCGGTACC
GCATCGTCCATCTCTTGCGCCGACGAGGAAACGCTACAGAGGCTGGATCA
ACCAAAAAGCGCTCACCGGCTGGCGAGGAAGAATCTGCTTTAGCTGGCCA
AGCGGCAGGATCTTCCGAAGAGGTGGAGGAGGCGGCAGAAGCCACTCCCG
CCTCGGTCAGCAAGTTGTCCCAGGCCCTGCAGCTCGAACACGATATGCAC
CAGGAACTGTCGCCGGATGAGTTCCACGAGCGCCTGCACACGCTCCACTT
TAAGAATATCGCAGCCGTGGCCCGCTACTATATGGAGAATTACGACCAGC
TGGCGCACACATACGGCGTGCTGCTGTTCATGTACTCGGTGTTCCTCACC
AAGGGCTTGGAGCTGGTTGCGGCCGATATATCGGACACGTCGGAGCCCCT
GATACACAGCACATACGGCTATGGCGGCCAGTCGCTTATTAACCTGATGC
TAACTGGGCGAGCAGTTGCCCATGTCTGGGATAATGAGCAGGACGTTGGC
GGACTGAAGCTGCGTGGCATCTGTGAGCAGAGCGACATCGGCTTTATAAC
ACTGATGGAGGAAATGCGTTACTGCACGGTGGGCTCCTTCTTCAAGAACC
CACGCTATCCCGTATGGGTGATGGGGTCCGATACGCATTTAACCGTTCTG
TTCAGCAACGAAAAGAGGCTTGTCTCACCAGAGACGCCCTCGGAAACTGG
TCGTCGGATCTTCAAATCGTACGACCCGGAGGGCAACAATTTCATATCGA
CCACAATGCTGCGCGAAGTTCTCATCGCCTTGAATCTGGTCAGCGAGCCG
GCCTATGTCGCCCTCATGCAGAAGCGTCTTGATCCGGAGAACTTGGGCAT
TATACTGCTAAATGCGTTCATGGACGAGTTCTTCCCGCTGGAGAGCCGCT
CCACGCCGGATACGTTCGAGCTGATGCACTACAACGGCATACCGGGCTCC
AATGAGAACAACAAGGTGCGCTACTATTGCGGCACGGCCATTTTGCTGGA
AGGCGATCTGAAGTCGGTCTGCACCTCGAACCCGATGGTCACCTGCCTGC
AGACCAAGTGGCCAAATATCGAAATAAACTGGCACGACGGCCATATGCCC
TCCTTGAATTGACGCCGTCAAGGGATCCACAGAAAATCGCTGCAGAAGGT
GTGCCAGAATCGCATGGAACGGCATGGACATACTGTGATGGAGGAAACAC
TGATGTAAACAGAAGAAGACGCGTTTGCACGTTTCTATTTCACACTAAAT
TGTATTTATTTGAAAATATTTAAAAAAAAAAAAAAAAAA

LD24478.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332.b 2910 CG7332.b 37..2174 1..2138 10690 100 Plus
CG7332.c 3413 CG7332.c 37..2174 1..2138 10690 100 Plus
CG7332-RA 2324 CG7332-RA 37..2174 1..2138 10690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18775159..18775884 770..1495 3615 99.9 Plus
chrX 22417052 chrX 18773679..18774316 1..638 3190 100 Plus
chrX 22417052 chrX 18776428..18776735 1814..2121 1525 99.7 Plus
chrX 22417052 chrX 18776194..18776356 1656..1818 815 100 Plus
chrX 22417052 chrX 18775976..18776136 1495..1655 805 100 Plus
chrX 22417052 chrX 18774968..18775103 636..771 680 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18886018..18886743 770..1495 3630 100 Plus
X 23542271 X 18884538..18885175 1..638 3190 100 Plus
X 23542271 X 18887298..18887622 1814..2138 1625 100 Plus
X 23542271 X 18887053..18887215 1656..1818 815 100 Plus
X 23542271 X 18886835..18886995 1495..1655 805 100 Plus
X 23542271 X 18885827..18885962 636..771 680 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18894116..18894841 770..1495 3630 100 Plus
X 23527363 X 18892636..18893273 1..638 3190 100 Plus
X 23527363 X 18895396..18895720 1814..2138 1625 100 Plus
X 23527363 X 18895151..18895313 1656..1818 815 100 Plus
X 23527363 X 18894933..18895093 1495..1655 805 100 Plus
X 23527363 X 18893925..18894060 636..771 680 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:24:21 has no hits.

LD24478.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:25:03 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18773679..18774315 1..637 96 -> Plus
chrX 18774970..18775103 638..771 100 -> Plus
chrX 18775161..18775884 772..1495 99 -> Plus
chrX 18775977..18776136 1496..1655 100 -> Plus
chrX 18776194..18776353 1656..1815 100 -> Plus
chrX 18776430..18776715 1816..2101 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:36 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 1..1683 280..1962 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:10 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 1..1683 280..1962 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:18:26 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 1..1683 280..1962 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:40 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 1..1683 280..1962 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:26 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 1..1683 280..1962 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:21 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 37..2157 1..2121 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:10 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 37..2157 1..2121 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:18:26 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 26..2146 1..2121 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:40 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 37..2157 1..2121 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:26 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
CG7332-RA 26..2146 1..2121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:03 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
X 18884538..18885174 1..637 100 -> Plus
X 18885829..18885962 638..771 100 -> Plus
X 18886020..18886743 772..1495 100 -> Plus
X 18886836..18886995 1496..1655 100 -> Plus
X 18887053..18887212 1656..1815 100 -> Plus
X 18887300..18887605 1816..2121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:03 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
X 18884538..18885174 1..637 100 -> Plus
X 18885829..18885962 638..771 100 -> Plus
X 18886020..18886743 772..1495 100 -> Plus
X 18886836..18886995 1496..1655 100 -> Plus
X 18887053..18887212 1656..1815 100 -> Plus
X 18887300..18887605 1816..2121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:03 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
X 18884538..18885174 1..637 100 -> Plus
X 18885829..18885962 638..771 100 -> Plus
X 18886020..18886743 772..1495 100 -> Plus
X 18886836..18886995 1496..1655 100 -> Plus
X 18887053..18887212 1656..1815 100 -> Plus
X 18887300..18887605 1816..2121 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:18:26 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18778571..18779207 1..637 100 -> Plus
arm_X 18779862..18779995 638..771 100 -> Plus
arm_X 18780053..18780776 772..1495 100 -> Plus
arm_X 18780869..18781028 1496..1655 100 -> Plus
arm_X 18781086..18781245 1656..1815 100 -> Plus
arm_X 18781333..18781638 1816..2121 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:22 Download gff for LD24478.complete
Subject Subject Range Query Range Percent Splice Strand
X 18894934..18895093 1496..1655 100 -> Plus
X 18895151..18895310 1656..1815 100 -> Plus
X 18892636..18893272 1..637 100 -> Plus
X 18893927..18894060 638..771 100 -> Plus
X 18894118..18894841 772..1495 100 -> Plus
X 18895398..18895703 1816..2121 100   Plus

LD24478.hyp Sequence

Translation from 279 to 1961

> LD24478.hyp
MNEKIVREQRGGEDSPSSVSAKSATAAASASTASMTFASAALESHKTTTI
TTASSSPRTSGASASASSSSRSASAPASSSSQQEKQPMLNATDMRELREI
KQLLWGDNVREDVFKRWSQGFEFSKVEPSALVQKQGGPCAVIAPVQAYLL
KIIIMDLPGIKLSEISLDKSQNLLIQALCDILKNCRAPRYRIVHLLRRRG
NATEAGSTKKRSPAGEEESALAGQAAGSSEEVEEAAEATPASVSKLSQAL
QLEHDMHQELSPDEFHERLHTLHFKNIAAVARYYMENYDQLAHTYGVLLF
MYSVFLTKGLELVAADISDTSEPLIHSTYGYGGQSLINLMLTGRAVAHVW
DNEQDVGGLKLRGICEQSDIGFITLMEEMRYCTVGSFFKNPRYPVWVMGS
DTHLTVLFSNEKRLVSPETPSETGRRIFKSYDPEGNNFISTTMLREVLIA
LNLVSEPAYVALMQKRLDPENLGIILLNAFMDEFFPLESRSTPDTFELMH
YNGIPGSNENNKVRYYCGTAILLEGDLKSVCTSNPMVTCLQTKWPNIEIN
WHDGHMPSLN*

LD24478.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332-PB 560 CG7332-PB 1..560 1..560 2869 100 Plus
CG7332-PA 560 CG7332-PA 1..560 1..560 2869 100 Plus

LD24478.pep Sequence

Translation from 279 to 1961

> LD24478.pep
MNEKIVREQRGGEDSPSSVSAKSATAAASASTASMTFASAALESHKTTTI
TTASSSPRTSGASASASSSSRSASAPASSSSQQEKQPMLNATDMRELREI
KQLLWGDNVREDVFKRWSQGFEFSKVEPSALVQKQGGPCAVIAPVQAYLL
KIIIMDLPGIKLSEISLDKSQNLLIQALCDILKNCRAPRYRIVHLLRRRG
NATEAGSTKKRSPAGEEESALAGQAAGSSEEVEEAAEATPASVSKLSQAL
QLEHDMHQELSPDEFHERLHTLHFKNIAAVARYYMENYDQLAHTYGVLLF
MYSVFLTKGLELVAADISDTSEPLIHSTYGYGGQSLINLMLTGRAVAHVW
DNEQDVGGLKLRGICEQSDIGFITLMEEMRYCTVGSFFKNPRYPVWVMGS
DTHLTVLFSNEKRLVSPETPSETGRRIFKSYDPEGNNFISTTMLREVLIA
LNLVSEPAYVALMQKRLDPENLGIILLNAFMDEFFPLESRSTPDTFELMH
YNGIPGSNENNKVRYYCGTAILLEGDLKSVCTSNPMVTCLQTKWPNIEIN
WHDGHMPSLN*

LD24478.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19248-PA 609 GF19248-PA 102..609 89..560 2170 78.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19199-PA 567 GG19199-PA 1..567 1..560 2559 88.2 Plus
Dere\GG15487-PA 447 GG15487-PA 120..308 245..415 152 26.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24455-PA 511 GH24455-PA 2..511 65..560 1924 70.7 Plus
Dgri\GH14837-PA 442 GH14837-PA 121..309 245..415 158 26.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7332-PB 560 CG7332-PB 1..560 1..560 2869 100 Plus
CG7332-PA 560 CG7332-PA 1..560 1..560 2869 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15513-PA 560 GI15513-PA 1..560 1..560 2086 69 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21330-PA 184 GL21330-PA 1..184 376..560 789 78 Plus
Dper\GL21329-PA 353 GL21329-PA 1..348 1..326 746 49.2 Plus
Dper\GL22770-PA 423 GL22770-PA 120..308 245..415 157 27 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20268-PA 583 GA20268-PA 1..583 1..560 1874 63.8 Plus
Dpse\GA12786-PA 450 GA12786-PA 120..308 245..415 157 27 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22931-PA 560 GM22931-PA 1..560 1..560 2537 93.2 Plus
Dsec\GM25259-PA 445 GM25259-PA 120..308 245..415 152 26.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17416-PA 408 GD17416-PA 176..408 328..560 1318 99.6 Plus
Dsim\GD17416-PA 408 GD17416-PA 1..175 1..178 618 87.6 Plus
Dsim\GD14293-PA 440 GD14293-PA 120..303 245..415 155 26.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19271-PA 541 GJ19271-PA 1..541 1..560 2100 71.7 Plus
Dvir\GJ14031-PA 443 GJ14031-PA 121..309 245..415 161 27 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18534-PA 636 GK18534-PA 1..636 1..560 2011 63.8 Plus
Dwil\GK20342-PA 451 GK20342-PA 120..306 245..415 157 26.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17762-PA 567 GE17762-PA 1..567 1..560 2606 89 Plus
Dyak\GE21798-PA 447 GE21798-PA 120..308 245..415 152 26.5 Plus