Clone LD24485 Report

Search the DGRC for LD24485

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:244
Well:85
Vector:pOT2
Associated Gene/TranscriptGlyP-RA
Protein status:LD24485.pep: gold
Preliminary Size:2853
Sequenced Size:2874

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7254 2001-01-01 Release 2 assignment
CG7254 2002-12-11 Blastp of sequenced clone
CG7254 2003-01-01 Sim4 clustering to Release 3
GlyP 2008-04-29 Release 5.5 accounting
GlyP 2008-08-15 Release 5.9 accounting
GlyP 2008-12-18 5.12 accounting

Clone Sequence Records

LD24485.complete Sequence

2874 bp (2874 high quality bases) assembled on 2002-12-11

GenBank Submission: AF160947

> LD24485.complete
CGTCTGTTCAGGTTCAGGTCTGGGTTGTGTCTATAGTCTCCGTCTCCTCT
TCGCTGTCGCACACGCAAACGGGTCTACGCCACACACACACGCGCACCCA
CGCAACGGAATCAGAGAACTATATAGAGCCGCCACAGAGAAGGGACATAC
ATAACTAGGACACCATGTCGAAGCCCCAATCCGACGCCGATCGGCGCAAA
CAGATCTCGGTGCGCGGGATCGCCGAGGTGGGCAATGTCACCGAAGTGAA
GAAGAACTTCAATCGCCACCTGCACTACACCCTGGTCAAGGATCGCAATG
TGTCCACCCTGAGGGACTACTACTTCGCCCTGGCCAACACCGTCAAGGAC
AACATGGTGGGCCGCTGGATTCGCACGCAGCAGCACTACTACGAGAAGGA
TCCCAAGCGCGTCTACTATCTGTCGCTGGAGTACTACATGGGTCGCTCAC
TGACCAACACCATGATCAACCTGGGAATCCAGAGCGAGTGCGAGGAGGCC
ATGTACCAGTTGGGTCTGGATATCGAGAACCTGGAGGAGATGGAGGAGGA
CGCCGGTCTGGGCAATGGTGGTCTGGGTCGTTTGGCCGCCTGTTTCCTCG
ACTCGATGGCCACTCTGGGTCTGGCCGCCTATGGCTATGGCATCCGTTAT
GAGTACGGTATCTTCGCCCAGAAGATCAAGAACGGCGAGCAGGTGGAGGA
GCCCGATGATTGGCTGCGTTATGGCAATCCCTGGGAGAAGGCTCGTCCGG
AGTTCATGCTGCCGGTCAACTTCTACGGCCGTGTGATCGACACGCCCGAG
GGCAAGAAGTGGGTGGACACCCAAAGGGTGTTTGCCATGCCCTACGACAA
CCCCATTCCCGGATACAACAACAACCACGTAAACACGCTGCGTCTGTGGT
CCGCCAAGTCGCCCATCGACTTCAACCTCAAGTTCTTCAACGATGGTGAC
TACATCCAGGCCGTGCTGGACCGCAATCTGGCTGAGAACATCTCACGTGT
CCTGTACCCCAACGACAACTTCTTCGAGGGCAAGGAGCTGCGTCTGAAGC
AGGAATACTTCATGTGCGCCGCCACGCTGCAGGATATCATCCGCCGCTAC
AAGGCCTCGAAGTTCGGATCCCGGGAGGCGGTCCGCAACACCTTCGATCA
CTTCCCCGACAAGGTGGCCATTCAGCTGAACGATACCCATCCATCGCTGG
CCATCCCTGAGCTGATGCGCATCCTGGTCGATGAGGAGCATCTGACCTGG
GAGAAGGCATGGGACATCACCGTCAGGAGTTGCGCGTACACCAACCACAC
CGTGCTCCCAGAGGCCCTGGAGCGCTGGCCCGTCTCCCTGCTGGAGTCGA
TCCTGCCCCGCCATCTGCAAATCATCTATCACATCAACTTCCTGCACATG
GAGAATGTGAAGAAGAAGTTCCCCGACGATTTGGACCGCATGCGCCGCAT
GTCGATGGTGGAGGAGGATGGCGAGAAGCGCATCAACATGGCTCATCTGT
CCATCGTCGGCTCCCACGCCGTCAACGGTGTGGCCGCCATCCACTCGCAG
ATCCTAAAGGACTCGCTGTTCCATGACTTCTACGAAATGGAGCCCCAGAA
GTTCCAGAACAAGACGAACGGTATTACCCCGCGTCGTTGGTTGCTGCTCT
GCAATCCCGGACTCTCCGACCTGATCGCCGAGAAGATCGGCGACGAGTGG
CCAGTGCATCTGGACCAACTGGTTGCTCTGAAGAAGTGGGCAAAGGACCC
CAACTTCCAGCGCAATGTAGCCCGCGTCAAGCAGGAGAACAAGCTGAAGC
TGGCCGCCATTCTGGAGAAGGACTACGGCGTTAAGATCAACCCCTCTTCC
ATGTTCGACATTCAGGTGAAACGTATTCACGAGTACAAGCGCCAGCTGCT
GAACTGCCTGCACATCATCACCCTGTACAACAGGATCAAGAAGGATCCCA
CAGCCAACTTCACCCCGAGGACAATCATGATCGGAGGCAAGGCTGCTCCG
GGCTACTATGTGGCCAAGCAGATCATCAAGCTCATCTGCGCCGTGGGCAA
CGTTGTGAACAACGATCCCATTGTGGGCGATAAGCTCAAGGTTATCTTCC
TGGAGAACTACCGTGTCACCCTGGCCGAGAAGATTATGCCCGCCGCCGAT
CTGTCCGAGCAGATCTCGACCGCCGGCACAGAGGCCTCTGGTACCGGCAA
CATGAAGTTCCAGCTTAACGGCGCCCTCACCATCGGCACCCTGGACGGTG
CCAACGTTGAGATGGCCGAGGAGATGGGTCTGGACAACATCTTTATCTTC
GGCATGACCGTCGACGAGGTGGAGGCGCTCAAGAAGAAGGGCTACAATGC
CTACGACTACTACAACGCCAACCCCGAGGTCAAGCAGGTGATTGACCAAA
TCCAGGGCGGATTCTTCAGCCCCGGCAATCCCAACGAGTTCAAGAACATT
GCCGACATTCTGCTTAAGTACGACCACTACTACTTGCTGGCCGACTACGA
TGCGTACATCAAGGCCCAGGATCTGGTCTCCAAGACCTACCAGAACCAAG
CCAAGTGGCTGGAGATGTCCATCAACAACATTGCGTCCAGCGGCAAATTC
TCGTCGGATCGCACCATCGCCGAGTACGCCCGCGAGATTTGGGGAGTGGA
GCCCACCTGGGAGAAGCTGCCAGCGCCGGAGGATCAGCCACAGAACTAAA
TCAATTTTTGATATTATTTTATTATTTATGTGCTTTACTTTTGCTAAAGT
CAAAGTTCAAGTTTAGGCGCCAAAAGCAACAACTAAAACAAATGAAGTGA
ACACGGGCCACAGCACCGAATTGTTAATATTTTATTTAATAAAAATCAAG
ATAAACAAAAAAAAAAAAAAAAAA

LD24485.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
GlyP-RA 3172 GlyP-RA 57..2914 1..2858 14290 100 Plus
GlyP-RB 3172 GlyP-RB 57..2914 1..2858 14290 100 Plus
GlyP.a 2771 GlyP.a 70..2520 408..2858 12255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2134781..2136387 937..2543 7945 99.6 Plus
chr2L 23010047 chr2L 2134180..2134710 406..936 2655 100 Plus
chr2L 23010047 chr2L 2130589..2130995 1..407 2020 99.8 Plus
chr2L 23010047 chr2L 2136471..2136786 2541..2856 1580 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2135038..2136644 937..2543 8035 100 Plus
2L 23513712 2L 2134437..2134967 406..936 2655 100 Plus
2L 23513712 2L 2130848..2131254 1..407 2035 100 Plus
2L 23513712 2L 2136728..2137045 2541..2858 1590 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2135038..2136644 937..2543 8035 100 Plus
2L 23513712 2L 2134437..2134967 406..936 2655 100 Plus
2L 23513712 2L 2130848..2131254 1..407 2035 100 Plus
2L 23513712 2L 2136728..2137045 2541..2858 1590 100 Plus
Blast to na_te.dros performed 2019-03-15 22:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 805..871 2766..2701 125 67.2 Minus

LD24485.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:25:05 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2130589..2130995 1..407 99 -> Plus
chr2L 2134182..2134710 408..936 100 -> Plus
chr2L 2134781..2136387 937..2543 99 -> Plus
chr2L 2136474..2136752 2544..2822 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:38 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RB 1..2535 165..2699 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:44 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RB 1..2535 165..2699 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:18:29 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RA 1..2535 165..2699 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:20 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RB 1..2535 165..2699 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:31 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RA 1..2535 165..2699 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:45 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RB 34..2889 1..2856 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:44 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RB 34..2889 1..2856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:18:29 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RA 36..2891 1..2856 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:20 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RB 34..2889 1..2856 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:31 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
GlyP-RA 36..2891 1..2856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:05 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2130848..2131254 1..407 100 -> Plus
2L 2134439..2134967 408..936 100 -> Plus
2L 2135038..2136644 937..2543 100 -> Plus
2L 2136731..2137043 2544..2856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:05 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2130848..2131254 1..407 100 -> Plus
2L 2134439..2134967 408..936 100 -> Plus
2L 2135038..2136644 937..2543 100 -> Plus
2L 2136731..2137043 2544..2856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:05 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2130848..2131254 1..407 100 -> Plus
2L 2134439..2134967 408..936 100 -> Plus
2L 2135038..2136644 937..2543 100 -> Plus
2L 2136731..2137043 2544..2856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:18:29 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2130848..2131254 1..407 100 -> Plus
arm_2L 2134439..2134967 408..936 100 -> Plus
arm_2L 2135038..2136644 937..2543 100 -> Plus
arm_2L 2136731..2137043 2544..2856 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:04 Download gff for LD24485.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2130848..2131254 1..407 100 -> Plus
2L 2134439..2134967 408..936 100 -> Plus
2L 2135038..2136644 937..2543 100 -> Plus
2L 2136731..2137043 2544..2856 100   Plus

LD24485.pep Sequence

Translation from 164 to 2698

> LD24485.pep
MSKPQSDADRRKQISVRGIAEVGNVTEVKKNFNRHLHYTLVKDRNVSTLR
DYYFALANTVKDNMVGRWIRTQQHYYEKDPKRVYYLSLEYYMGRSLTNTM
INLGIQSECEEAMYQLGLDIENLEEMEEDAGLGNGGLGRLAACFLDSMAT
LGLAAYGYGIRYEYGIFAQKIKNGEQVEEPDDWLRYGNPWEKARPEFMLP
VNFYGRVIDTPEGKKWVDTQRVFAMPYDNPIPGYNNNHVNTLRLWSAKSP
IDFNLKFFNDGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFM
CAATLQDIIRRYKASKFGSREAVRNTFDHFPDKVAIQLNDTHPSLAIPEL
MRILVDEEHLTWEKAWDITVRSCAYTNHTVLPEALERWPVSLLESILPRH
LQIIYHINFLHMENVKKKFPDDLDRMRRMSMVEEDGEKRINMAHLSIVGS
HAVNGVAAIHSQILKDSLFHDFYEMEPQKFQNKTNGITPRRWLLLCNPGL
SDLIAEKIGDEWPVHLDQLVALKKWAKDPNFQRNVARVKQENKLKLAAIL
EKDYGVKINPSSMFDIQVKRIHEYKRQLLNCLHIITLYNRIKKDPTANFT
PRTIMIGGKAAPGYYVAKQIIKLICAVGNVVNNDPIVGDKLKVIFLENYR
VTLAEKIMPAADLSEQISTAGTEASGTGNMKFQLNGALTIGTLDGANVEM
AEEMGLDNIFIFGMTVDEVEALKKKGYNAYDYYNANPEVKQVIDQIQGGF
FSPGNPNEFKNIADILLKYDHYYLLADYDAYIKAQDLVSKTYQNQAKWLE
MSINNIASSGKFSSDRTIAEYAREIWGVEPTWEKLPAPEDQPQN*

LD24485.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14601-PA 844 GF14601-PA 1..844 1..844 4517 98.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24830-PA 844 GG24830-PA 1..844 1..844 4549 99.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11425-PA 842 GH11425-PA 1..841 1..841 4461 97.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
GlyP-PB 844 CG7254-PB 1..844 1..844 4461 100 Plus
GlyP-PA 844 CG7254-PA 1..844 1..844 4461 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14641-PA 842 GI14641-PA 1..841 1..841 4466 97.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18703-PA 841 GL18703-PA 1..841 1..841 4323 95.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20213-PA 841 GA20213-PA 1..841 1..841 4323 95.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23707-PA 681 GM23707-PA 226..681 389..844 2415 99.6 Plus
Dsec\GM23707-PA 681 GM23707-PA 1..219 82..300 1195 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23132-PA 775 GD23132-PA 333..775 402..844 2352 99.3 Plus
Dsim\GD23132-PA 775 GD23132-PA 1..342 1..342 1831 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17151-PA 842 GJ17151-PA 1..841 1..841 4339 95.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15132-PA 842 GK15132-PA 1..841 1..841 4477 98.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17935-PA 844 GE17935-PA 1..844 1..844 4542 99.6 Plus

LD24485.hyp Sequence

Translation from 164 to 2698

> LD24485.hyp
MSKPQSDADRRKQISVRGIAEVGNVTEVKKNFNRHLHYTLVKDRNVSTLR
DYYFALANTVKDNMVGRWIRTQQHYYEKDPKRVYYLSLEYYMGRSLTNTM
INLGIQSECEEAMYQLGLDIENLEEMEEDAGLGNGGLGRLAACFLDSMAT
LGLAAYGYGIRYEYGIFAQKIKNGEQVEEPDDWLRYGNPWEKARPEFMLP
VNFYGRVIDTPEGKKWVDTQRVFAMPYDNPIPGYNNNHVNTLRLWSAKSP
IDFNLKFFNDGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFM
CAATLQDIIRRYKASKFGSREAVRNTFDHFPDKVAIQLNDTHPSLAIPEL
MRILVDEEHLTWEKAWDITVRSCAYTNHTVLPEALERWPVSLLESILPRH
LQIIYHINFLHMENVKKKFPDDLDRMRRMSMVEEDGEKRINMAHLSIVGS
HAVNGVAAIHSQILKDSLFHDFYEMEPQKFQNKTNGITPRRWLLLCNPGL
SDLIAEKIGDEWPVHLDQLVALKKWAKDPNFQRNVARVKQENKLKLAAIL
EKDYGVKINPSSMFDIQVKRIHEYKRQLLNCLHIITLYNRIKKDPTANFT
PRTIMIGGKAAPGYYVAKQIIKLICAVGNVVNNDPIVGDKLKVIFLENYR
VTLAEKIMPAADLSEQISTAGTEASGTGNMKFQLNGALTIGTLDGANVEM
AEEMGLDNIFIFGMTVDEVEALKKKGYNAYDYYNANPEVKQVIDQIQGGF
FSPGNPNEFKNIADILLKYDHYYLLADYDAYIKAQDLVSKTYQNQAKWLE
MSINNIASSGKFSSDRTIAEYAREIWGVEPTWEKLPAPEDQPQN*

LD24485.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
GlyP-PB 844 CG7254-PB 1..844 1..844 4461 100 Plus
GlyP-PA 844 CG7254-PA 1..844 1..844 4461 100 Plus