Clone LD24495 Report

Search the DGRC for LD24495

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:244
Well:95
Vector:pOT2
Associated Gene/TranscriptCG8258-RA
Protein status:LD24495.pep: gold
Preliminary Size:2200
Sequenced Size:1933

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8258 2001-01-01 Release 2 assignment
CG8258 2001-09-19 Blastp of sequenced clone
CG8258 2003-01-01 Sim4 clustering to Release 3
CG8258 2008-04-29 Release 5.5 accounting
CG8258 2008-08-15 Release 5.9 accounting
CG8258 2008-12-18 5.12 accounting

Clone Sequence Records

LD24495.complete Sequence

1933 bp (1933 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058545

> LD24495.complete
CCACTTTGAGGTTATAACTATAGCTGGAATTTACCGACTGACTCCGTGTG
AAATTGAAATCTGTGTTAAAAAATGGCTTTATCCGTTCCCAAGGCTCCCG
GTGTGTCGCAGATGCTGAAGGATGGCGCCCGGATGTACAGTGGGCTGGAG
GAGGCGGTGTTCCGCAACATCAGCGCCTGCAAGGAGTTTGCACAGACCAT
GCGCTCTGCCTATGGGCCAAATGGCATGAACAAGATGATCATCAATCACA
TCGAGAAGCAGTTCGTGACCAGCGATGCCGGCACCATCATGCGGGAGCTG
GATGTTGAGCATCCAGCCGCCAAGTTGATCGTCATGGCCAGCCAGATGCA
GGATGCCGAGGTGGGCGATGGTACAAACTTCGTGGTGGTGCTGGCCGGAG
CTCTGTTGGAGTCCGCTGAGGAGCTGCTGCGTCTAGGAATCACCACTGCC
GAGATCTCCGACGGCTATGAAAAGGCCTTGGAGAAGGCTCTGGAGATTCT
GCCCAATCTGGTGAGCCACAAGATCGAGGACTATCGCAATGTGGAGAAGG
TCAAGGAGGTACTCCGCACATCGATCATGTCGAAGCAGTACGGCCAGGAG
GACTTCCTCAACGATTTGGTGAGCAAGGCCTGCGTCTCCATCTTGCCGGA
TGAGGGCACCTTCAACGTGGACAACATTCGCATCTGTAAGATCTTGGGCA
GCGGACTGACCAAGTCTGAGGTGGTTCGCGGCATGGTCTTCAAGCGCTTC
GTAGAAGGCGATGTGACCTATGCAGAGAAGGCCAAGATCGTGATTTTCTC
CTGCCCCGTCGATATTATCCAAACTGAGACCAAGGGCACAGTGCTGATCA
AGTCGGCCGACGAGCTATTGAGCTTTTCCTCCGGCGAAGAGAGCCTGTTG
GAGAGCCAGATCAAGGCTATCGCCGACGCAGGTGTCAAGGTGGTTGTGGC
CGGCGGCAAGGTTGGCGACATGGCTCTGCACTTCCTTAACAAATACGGTC
TGATGGCCGTGCGTCTCAACTCTAAGTTCGACCTGCGTCGCCTGAGCCGA
TCCGTAAACGCCACTGTCCTGCCGCGCATCACCACGCCCAGTCAGGAGGA
GTTGGGCTACTGCGACAAAGTTTGCATCGAGGAACTGGGAGACACCACAA
TTGTGGCCTTCAGGAACGAGGGCAAGGACTCGCGCATTGCCACCGTGGTG
ATCCGTGGAGCTACCGACAACTTCATGGATGACATTGAGCGTGCCCTGGA
TGACGCTATTAACAACTTCAAGTGCCTGACCCGGGATGGCCGCTATCTGC
CCGGAGCTGGCGCCACCGAGATCGAGTTGGCCACCCAGCTGTCCGCCTAT
GCTGATACTCTGCCTGGTCTGGACCAGTACGCCGTGCGCAAGTTCGCTAA
TGCGCTGGAAGTTTTCCCCAAGGCTCTGGCCGAGAACTCCGGCATCAATG
GCACGGAAATCGTCAACCAGTTGTATTTGGCCCACAACAACGAGGCCGGA
AAGACAATCGGCTTCGACATTGAGGCCGAGAAGGCCAGCACCATCGACAC
AACGAAGGCAAAGCTCTTCGATCTGTACCAGTCCAAGTTCTGGGGTCTCA
AGTACGCTGTTGGCGCGGCCGCAACCATCTTGAAGGTGGACCAGATCATC
ATGGCCAAGCGCGCCGGAGGTCCCAAGGTGCGACAGGCTGCCGGCAGCGA
TGACGAGAGTTAAGCGGCTCCTCTGTGATTCGTACTCCCTACTATAACTA
GTTTCTCCCGCTCCCACAAAGAGTGCATTGTATTTTCATAAACGAGTCCC
ATGGAAATTATAAATTTCATTAACCACTCTCACACTCACCCACATACACA
GCCATGCACACAGTTTCTTGTATTAATAAACTTAACTTACGAAAACTGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD24495.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8258-RA 2066 CG8258-RA 124..2023 1..1900 9500 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4793193..4794225 1164..132 5165 100 Minus
chr2R 21145070 chr2R 4792395..4793132 1898..1161 3690 100 Minus
chr2R 21145070 chr2R 4794404..4794535 132..1 660 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8905642..8906674 1164..132 5165 100 Minus
2R 25286936 2R 8904842..8905581 1900..1161 3700 100 Minus
2R 25286936 2R 8906853..8906984 132..1 660 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8906841..8907873 1164..132 5165 100 Minus
2R 25260384 2R 8906041..8906780 1900..1161 3700 100 Minus
2R 25260384 2R 8908052..8908183 132..1 660 100 Minus
Blast to na_te.dros performed 2019-03-16 05:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2254..2300 582..630 113 75.5 Plus

LD24495.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:06:35 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4794404..4794535 1..132 100   Minus
chr2R 4792395..4793129 1164..1898 100 <- Minus
chr2R 4793194..4794224 133..1163 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:41 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 1..1641 73..1713 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:19 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 1..1641 73..1713 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:05:49 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 1..1641 73..1713 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:52 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 1..1641 73..1713 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:56:39 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 1..1641 73..1713 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:54 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 18..1915 1..1898 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:18 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 18..1915 1..1898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:05:49 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 7..1904 1..1898 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:52 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 18..1915 1..1898 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:56:39 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 7..1904 1..1898 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:35 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8904844..8905578 1164..1898 100 <- Minus
2R 8905643..8906673 133..1163 100 <- Minus
2R 8906853..8906984 1..132 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:35 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8904844..8905578 1164..1898 100 <- Minus
2R 8905643..8906673 133..1163 100 <- Minus
2R 8906853..8906984 1..132 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:35 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8904844..8905578 1164..1898 100 <- Minus
2R 8905643..8906673 133..1163 100 <- Minus
2R 8906853..8906984 1..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:05:49 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4794358..4794489 1..132 100   Minus
arm_2R 4792349..4793083 1164..1898 100 <- Minus
arm_2R 4793148..4794178 133..1163 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:44 Download gff for LD24495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8906043..8906777 1164..1898 100 <- Minus
2R 8906842..8907872 133..1163 100 <- Minus
2R 8908052..8908183 1..132 100   Minus

LD24495.hyp Sequence

Translation from 72 to 1712

> LD24495.hyp
MALSVPKAPGVSQMLKDGARMYSGLEEAVFRNISACKEFAQTMRSAYGPN
GMNKMIINHIEKQFVTSDAGTIMRELDVEHPAAKLIVMASQMQDAEVGDG
TNFVVVLAGALLESAEELLRLGITTAEISDGYEKALEKALEILPNLVSHK
IEDYRNVEKVKEVLRTSIMSKQYGQEDFLNDLVSKACVSILPDEGTFNVD
NIRICKILGSGLTKSEVVRGMVFKRFVEGDVTYAEKAKIVIFSCPVDIIQ
TETKGTVLIKSADELLSFSSGEESLLESQIKAIADAGVKVVVAGGKVGDM
ALHFLNKYGLMAVRLNSKFDLRRLSRSVNATVLPRITTPSQEELGYCDKV
CIEELGDTTIVAFRNEGKDSRIATVVIRGATDNFMDDIERALDDAINNFK
CLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAVRKFANALEVFPK
ALAENSGINGTEIVNQLYLAHNNEAGKTIGFDIEAEKASTIDTTKAKLFD
LYQSKFWGLKYAVGAAATILKVDQIIMAKRAGGPKVRQAAGSDDES*

LD24495.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8258-PA 546 CG8258-PA 1..546 1..546 2729 100 Plus
T-cp1-PA 557 CG5374-PA 23..534 31..526 551 28.8 Plus
T-cp1-PB 557 CG5374-PB 23..534 31..526 551 28.8 Plus
CG5525-PA 533 CG5525-PA 3..529 6..526 545 29.5 Plus
Tcp-1eta-PA 544 CG8351-PA 7..527 14..534 541 27.4 Plus

LD24495.pep Sequence

Translation from 72 to 1712

> LD24495.pep
MALSVPKAPGVSQMLKDGARMYSGLEEAVFRNISACKEFAQTMRSAYGPN
GMNKMIINHIEKQFVTSDAGTIMRELDVEHPAAKLIVMASQMQDAEVGDG
TNFVVVLAGALLESAEELLRLGITTAEISDGYEKALEKALEILPNLVSHK
IEDYRNVEKVKEVLRTSIMSKQYGQEDFLNDLVSKACVSILPDEGTFNVD
NIRICKILGSGLTKSEVVRGMVFKRFVEGDVTYAEKAKIVIFSCPVDIIQ
TETKGTVLIKSADELLSFSSGEESLLESQIKAIADAGVKVVVAGGKVGDM
ALHFLNKYGLMAVRLNSKFDLRRLSRSVNATVLPRITTPSQEELGYCDKV
CIEELGDTTIVAFRNEGKDSRIATVVIRGATDNFMDDIERALDDAINNFK
CLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAVRKFANALEVFPK
ALAENSGINGTEIVNQLYLAHNNEAGKTIGFDIEAEKASTIDTTKAKLFD
LYQSKFWGLKYAVGAAATILKVDQIIMAKRAGGPKVRQAAGSDDES*

LD24495.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12562-PA 546 GF12562-PA 1..546 1..546 2720 96 Plus
Dana\GF15661-PA 533 GF15661-PA 3..529 6..526 550 31.1 Plus
Dana\GF12298-PA 542 GF12298-PA 33..541 27..533 518 29.6 Plus
Dana\GF16152-PA 557 GF16152-PA 23..534 31..526 513 28.7 Plus
Dana\GF18192-PA 545 GF18192-PA 7..525 14..532 503 28.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10613-PA 546 GG10613-PA 1..546 1..546 2847 98.2 Plus
Dere\GG10247-PA 533 GG10247-PA 3..529 6..526 534 30.5 Plus
Dere\GG12510-PA 557 GG12510-PA 23..534 31..526 523 29.1 Plus
Dere\GG20252-PA 542 GG20252-PA 33..541 27..533 518 29.6 Plus
Dere\GG13138-PA 544 GG13138-PA 7..525 14..532 505 27.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22689-PA 546 GH22689-PA 1..546 1..546 2624 91.6 Plus
Dgri\GH19719-PA 541 GH19719-PA 33..534 27..525 529 29.8 Plus
Dgri\GH18443-PA 557 GH18443-PA 23..534 31..526 519 28.9 Plus
Dgri\GH11666-PA 533 GH11666-PA 12..529 6..526 514 29.9 Plus
Dgri\GH18159-PA 544 GH18159-PA 25..538 30..540 478 28.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CCT8-PA 546 CG8258-PA 1..546 1..546 2729 100 Plus
CCT1-PA 557 CG5374-PA 23..534 31..526 551 28.8 Plus
CCT1-PB 557 CG5374-PB 23..534 31..526 551 28.8 Plus
CCT4-PA 533 CG5525-PA 3..529 6..526 545 29.5 Plus
CCT7-PA 544 CG8351-PA 7..527 14..534 541 27.4 Plus
CCT5-PA 542 CG8439-PA 33..541 27..533 535 29.4 Plus
CCT5-PB 512 CG8439-PB 8..511 32..533 530 29.5 Plus
CCT3-PD 544 CG8977-PD 10..538 14..540 483 27.5 Plus
CCT3-PC 544 CG8977-PC 10..538 14..540 483 27.5 Plus
CCT3-PB 544 CG8977-PB 10..538 14..540 483 27.5 Plus
CCT3-PA 544 CG8977-PA 10..538 14..540 483 27.5 Plus
CCT6-PA 533 CG8231-PA 18..526 27..528 473 28 Plus
CCT2-PA 535 CG7033-PA 38..521 43..526 455 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20616-PA 546 GI20616-PA 1..546 1..546 2643 92.5 Plus
Dmoj\GI17110-PA 533 GI17110-PA 11..529 9..526 571 31.4 Plus
Dmoj\GI11150-PA 557 GI11150-PA 23..534 31..526 549 30 Plus
Dmoj\GI23651-PA 544 GI23651-PA 7..525 14..532 524 28.7 Plus
Dmoj\GI10788-PA 557 GI10788-PA 23..534 31..526 522 29 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10409-PA 546 GL10409-PA 1..546 1..546 2745 94.3 Plus
Dper\GL19739-PA 533 GL19739-PA 3..529 6..526 536 29.9 Plus
Dper\GL23334-PA 557 GL23334-PA 23..534 31..526 519 28.8 Plus
Dper\GL11023-PA 542 GL11023-PA 33..534 27..525 516 29.6 Plus
Dper\GL12486-PA 540 GL12486-PA 6..524 14..532 488 28.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20937-PA 546 GA20937-PA 1..546 1..546 2738 94 Plus
Dpse\GA18950-PA 533 GA18950-PA 3..529 6..526 536 29.9 Plus
Dpse\GA18830-PA 557 GA18830-PA 23..534 31..526 519 28.8 Plus
Dpse\GA21078-PA 542 GA21078-PA 33..534 27..525 516 29.6 Plus
Dpse\GA21448-PA 544 GA21448-PA 25..538 30..540 496 29.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20657-PA 546 GM20657-PA 1..546 1..546 2860 98.9 Plus
Dsec\GM26064-PA 533 GM26064-PA 3..529 6..526 535 30.5 Plus
Dsec\GM21339-PA 542 GM21339-PA 33..541 27..533 525 29.8 Plus
Dsec\GM23644-PA 557 GM23644-PA 23..534 31..526 520 28.9 Plus
Dsec\GM15181-PA 544 GM15181-PA 25..538 30..540 482 28.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10130-PA 546 GD10130-PA 1..546 1..546 2860 98.9 Plus
Dsim\T-cp1-PA 557 GD18453-PA 23..534 31..526 520 28.9 Plus
Dsim\GD19118-PA 544 GD19118-PA 25..538 30..540 482 28.2 Plus
Dsim\GD22106-PA 516 GD22106-PA 3..512 6..526 451 28.3 Plus
Dsim\GD18576-PA 436 GD18576-PA 7..421 14..471 407 24.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21056-PA 546 GJ21056-PA 1..546 1..546 2612 91.4 Plus
Dvir\GJ16148-PA 533 GJ16148-PA 28..529 30..526 559 31.5 Plus
Dvir\GJ19908-PA 541 GJ19908-PA 33..534 27..525 520 29.6 Plus
Dvir\GJ14386-PA 557 GJ14386-PA 23..534 31..526 517 29.1 Plus
Dvir\GJ23495-PA 545 GJ23495-PA 7..525 14..532 508 28.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21949-PA 546 GK21949-PA 1..546 1..546 2687 93.8 Plus
Dwil\GK14617-PA 533 GK14617-PA 3..529 6..526 549 30.8 Plus
Dwil\GK14439-PA 557 GK14439-PA 23..534 31..526 518 28.9 Plus
Dwil\GK11257-PA 544 GK11257-PA 7..525 14..532 508 28.4 Plus
Dwil\GK23011-PA 542 GK23011-PA 33..541 27..533 508 29.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22743-PA 546 GE22743-PA 1..546 1..546 2853 98.5 Plus
Dyak\GE12130-PA 533 GE12130-PA 3..529 6..526 536 30.5 Plus
Dyak\GE24032-PA 557 GE24032-PA 23..534 31..526 522 29.1 Plus
Dyak\GE12411-PA 542 GE12411-PA 33..541 27..533 520 29.6 Plus
Dyak\GE24588-PA 544 GE24588-PA 25..538 30..540 481 28.2 Plus