Clone LD24529 Report

Search the DGRC for LD24529

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:245
Well:29
Vector:pOT2
Associated Gene/TranscriptTaf6-RA
Protein status:LD24529.pep: gold
Preliminary Size:2200
Sequenced Size:2075

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9348 2001-01-01 Release 2 assignment
CG32211 2001-07-04 Blastp of sequenced clone
CG32211 2003-01-01 Sim4 clustering to Release 3
Taf6 2008-04-29 Release 5.5 accounting
Taf6 2008-08-15 Release 5.9 accounting
Taf6 2008-12-18 5.12 accounting

Clone Sequence Records

LD24529.complete Sequence

2075 bp (2075 high quality bases) assembled on 2005-08-22

GenBank Submission: AY051702

> LD24529.complete
TCTCTTTTGGGTGTGTGCACACTGGCCGAGCAGCTCGGCGATTATTATTT
GTTTATTTGTAAAAACCTGGGAAATGAGTGGAAAACCGTCGAAACCGAGC
AGCCCCTCCAGCAGCATGCTGTACGGCTCCAGCATCTCGGCGGAGTCCAT
GAAGGTGATCGCGGAGAGCATCGGAGTGGGCTCCCTGTCGGATGACGCCG
CCAAGGAACTAGCGGAGGATGTGTCCATCAAGCTGAAGAGGATTGTACAG
GATGCGGCCAAGTTCATGAACCACGCCAAGCGGCAGAAGCTCTCAGTGCG
GGACATCGACATGTCCCTTAAGGTGCGAAATGTGGAGCCGCAGTACGGTT
TCGTAGCCAAGGACTTCATTCCATTCCGCTTCGCATCTGGCGGAGGACGG
GAGCTGCACTTCACCGAGGACAAGGAAATCGACCTAGGAGAAATCACATC
CACCAACTCTGTAAAAATTCCCCTGGATCTCACCCTGCGCTCCCATTGGT
TTGTTGTGGAGGGAGTGCAACCCACTGTGCCCGAAAACCCCCCTCCGCTC
TCGAAGGATTCCCAGTTACTGGACTCGGTCAATCCAGTTATTAAGATGGA
TCAAGGCCTAAACAAAGATGCGGCAGGCAAACCCACCACCGGCAAGATAC
ACAAGCTGAAAAACGTGGAGACCATTCATGTCAAGCAACTGGCCACGCAC
GAGTTGTCCGTGGAGCAGCAGTTGTACTACAAGGAGATCACCGAGGCGTG
CGTGGGATCTGATGAGCCGCGGCGCGGGGAAGCGCTGCAGTCGCTGGGAT
CCGATCCTGGCCTGCACGAAATGCTTCCCCGCATGTGCACCTTCATTGCC
GAGGGAGTTAAGGTCAATGTGGTTCAGAACAACTTGGCGTTGCTTATTTA
CCTCATGCGCATGGTTCGTGCGCTTCTGGATAATCCTTCGCTGTTTCTGG
AGAAATACCTCCACGAACTGATACCCTCGGTGATGACGTGCATTGTGTCC
AAACAGCTGTGTATGCGCCCCGAGCTGGACAATCACTGGGCCCTGCGAGA
CTTTGCCTCCCGACTGATGGCTCAAATCTGCAAGAACTTCAATACCCTAA
CCAACAATCTGCAAACCCGTGTCACCCGCATCTTCAGCAAGGCCCTGCAG
AACGACAAGACCCACCTGTCCTCGCTTTACGGCTCTATTGCGGGTCTCTC
GGAGCTGGGGGGCGAAGTCATAAAGGTTTTCATCATACCCCGCCTTAAGT
TCATATCGGAGCGCATTGAACCTCACCTGCTCGGCACCTCCATCAGCAAC
ACTGACAAGACAGCAGCAGGTCACATCCGCGCCATGCTTCAGAAGTGCTG
TCCCCCGATTCTCAGGCAAATGCGCTCAGCGCCAGATACAGCGGAGGACT
ACAAGAACGACTTTGGCTTCCTGGGGCCGTCGCTGTGCCAGGCAGTAGTC
AAAGTTCGAAATGCGCCCGCCTCAAGCATTGTAACCCTGTCATCCAACAC
TATCAACACGGCACCCATCACGAGTGCAGCACAAACAGCAACAACCATCG
GACGAGTGTCCATGCCCACCACACAGAGACAGGGAAGTCCCGGAGTCTCG
TCCCTGCCGCAAATAAGAGCCATTCAGGCCAACCAGCCGGCGCAAAAGTT
TGTGATAGTCACCCAGAACTCGCCGCAGCAGGGCCAGGCGAAGGTGGTGC
GGCGTGGCAGCTCTCCGCACAGCGTGGTCCTCTCCGCGGCCTCCAACGCT
GCCAGTGCCTCCAATTCGAACTCAAGCTCGAGCGGCAGTCTACTAGCGGC
TGCACAGCGGAGCAGCGATAATGTGTGTGTTATTGCCGGTAGCGAAGCGC
CAGCAGTTGATGGTATAACAGTTCAATCTTTCAGAGCATCCTAGACGCCA
ACTCGCTGATCATTGAGACGGAGATTGTGCGCGCACCGCCCGAGCTGGAC
GATCTCTCGCACCTGGAGTAGCCAGCTTAGTTCGTAGTCCACATTTTGTC
ATATTGTATGCAATAAAATAAAAAATGCGGGTTCCTACCCCAAAAAAATG
TAACCACAAAAAAAAAAAAAAAAAA

LD24529.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RA 2158 Taf6-RA 25..2086 1..2062 10295 99.9 Plus
Taf6.d 2056 Taf6.d 1..2055 1..2058 10220 99.8 Plus
Taf6.a 2010 Taf6.a 1..1822 1..1822 9110 100 Plus
Taf6.a 2010 Taf6.a 1823..2009 1872..2058 935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19588468..19589425 1..958 4790 100 Plus
chr3L 24539361 chr3L 19590290..19590763 1584..2057 2355 99.8 Plus
chr3L 24539361 chr3L 19589714..19590170 1128..1584 2285 100 Plus
chr3L 24539361 chr3L 19589484..19589657 955..1128 855 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19599087..19600044 1..958 4790 100 Plus
3L 28110227 3L 19600909..19601387 1584..2062 2380 99.8 Plus
3L 28110227 3L 19600333..19600789 1128..1584 2285 100 Plus
3L 28110227 3L 19600103..19600276 955..1128 855 99.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19592187..19593144 1..958 4790 100 Plus
3L 28103327 3L 19594009..19594487 1584..2062 2380 99.7 Plus
3L 28103327 3L 19593433..19593889 1128..1584 2285 100 Plus
3L 28103327 3L 19593203..19593376 955..1128 855 99.4 Plus
Blast to na_te.dros performed 2019-03-16 02:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 1457..1499 231..189 116 74.4 Minus

LD24529.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:13:26 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19588468..19589425 1..958 100 -> Plus
chr3L 19589488..19589657 959..1128 100 -> Plus
chr3L 19589715..19590170 1129..1584 100 -> Plus
chr3L 19590291..19590763 1585..2057 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:44 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..1821 74..1894 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:45:28 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..1821 74..1894 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:15 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..1821 74..1894 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:26:26 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..1821 74..1894 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:01:40 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..1821 74..1894 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:54:13 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..2057 1..2057 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:45:28 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..2057 1..2057 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:15 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..2056 2..2057 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:26:26 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..2057 1..2057 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:01:40 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..2056 2..2057 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:26 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19599087..19600044 1..958 100 -> Plus
3L 19600107..19600276 959..1128 100 -> Plus
3L 19600334..19600789 1129..1584 100 -> Plus
3L 19600910..19601382 1585..2057 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:26 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19599087..19600044 1..958 100 -> Plus
3L 19600107..19600276 959..1128 100 -> Plus
3L 19600334..19600789 1129..1584 100 -> Plus
3L 19600910..19601382 1585..2057 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:26 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19599087..19600044 1..958 100 -> Plus
3L 19600107..19600276 959..1128 100 -> Plus
3L 19600334..19600789 1129..1584 100 -> Plus
3L 19600910..19601382 1585..2057 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:15 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19592187..19593144 1..958 100 -> Plus
arm_3L 19593207..19593376 959..1128 100 -> Plus
arm_3L 19593434..19593889 1129..1584 100 -> Plus
arm_3L 19594010..19594482 1585..2057 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:59:26 Download gff for LD24529.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19592187..19593144 1..958 100 -> Plus
3L 19593207..19593376 959..1128 100 -> Plus
3L 19593434..19593889 1129..1584 100 -> Plus
3L 19594010..19594482 1585..2057 100   Plus

LD24529.hyp Sequence

Translation from 0 to 1893

> LD24529.hyp
LFWVCAHWPSSSAIIICLFVKTWEMSGKPSKPSSPSSSMLYGSSISAESM
KVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVR
DIDMSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLGEITS
TNSVKIPLDLTLRSHWFVVEGVQPTVPENPPPLSKDSQLLDSVNPVIKMD
QGLNKDAAGKPTTGKIHKLKNVETIHVKQLATHELSVEQQLYYKEITEAC
VGSDEPRRGEALQSLGSDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIY
LMRMVRALLDNPSLFLEKYLHELIPSVMTCIVSKQLCMRPELDNHWALRD
FASRLMAQICKNFNTLTNNLQTRVTRIFSKALQNDKTHLSSLYGSIAGLS
ELGGEVIKVFIIPRLKFISERIEPHLLGTSISNTDKTAAGHIRAMLQKCC
PPILRQMRSAPDTAEDYKNDFGFLGPSLCQAVVKVRNAPASSIVTLSSNT
INTAPITSAAQTATTIGRVSMPTTQRQGSPGVSSLPQIRAIQANQPAQKF
VIVTQNSPQQGQAKVVRRGSSPHSVVLSAASNAASASNSNSSSSGSLLAA
AQRSSDNVCVIAGSEAPAVDGITVQSFRAS*

LD24529.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-PA 606 CG32211-PA 1..606 25..630 3047 100 Plus
Taf6-PB 605 CG32211-PB 1..605 25..630 3031 99.8 Plus
mia-PC 589 CG10390-PC 169..555 222..594 566 34.7 Plus
mia-PB 589 CG10390-PB 169..555 222..594 566 34.7 Plus
mia-PA 589 CG10390-PA 169..555 222..594 566 34.7 Plus

LD24529.pep Sequence

Translation from 73 to 1893

> LD24529.pep
MSGKPSKPSSPSSSMLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDV
SIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAKDFIP
FRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQP
TVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVET
IHVKQLATHELSVEQQLYYKEITEACVGSDEPRRGEALQSLGSDPGLHEM
LPRMCTFIAEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELI
PSVMTCIVSKQLCMRPELDNHWALRDFASRLMAQICKNFNTLTNNLQTRV
TRIFSKALQNDKTHLSSLYGSIAGLSELGGEVIKVFIIPRLKFISERIEP
HLLGTSISNTDKTAAGHIRAMLQKCCPPILRQMRSAPDTAEDYKNDFGFL
GPSLCQAVVKVRNAPASSIVTLSSNTINTAPITSAAQTATTIGRVSMPTT
QRQGSPGVSSLPQIRAIQANQPAQKFVIVTQNSPQQGQAKVVRRGSSPHS
VVLSAASNAASASNSNSSSSGSLLAAAQRSSDNVCVIAGSEAPAVDGITV
QSFRAS*

LD24529.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23708-PA 619 GF23708-PA 1..598 1..590 2832 91.1 Plus
Dana\GF16042-PA 539 GF16042-PA 151..413 199..462 572 40.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16046-PA 611 GG16046-PA 1..590 1..590 3045 96.8 Plus
Dere\GG10968-PA 570 GG10968-PA 12..413 20..462 572 32.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16937-PA 613 GH16937-PA 15..588 15..586 2688 89.6 Plus
Dgri\GH17238-PA 735 GH17238-PA 433..703 195..462 429 35.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-PA 606 CG32211-PA 1..606 1..606 3047 100 Plus
Taf6-PB 605 CG32211-PB 1..605 1..606 3031 99.8 Plus
mia-PC 589 CG10390-PC 169..555 198..570 566 34.7 Plus
mia-PB 589 CG10390-PB 169..555 198..570 566 34.7 Plus
mia-PA 589 CG10390-PA 169..555 198..570 566 34.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11798-PA 637 GI11798-PA 1..553 1..553 2775 92.4 Plus
Dmoj\GI24488-PA 440 GI24488-PA 170..415 211..458 511 42.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20945-PA 555 GL20945-PA 1..520 1..521 2551 90.2 Plus
Dper\GL16368-PA 501 GL16368-PA 95..237 211..352 227 32.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16761-PA 620 GA16761-PA 1..561 1..560 2664 89.1 Plus
Dpse\GA22349-PA 580 GA22349-PA 95..343 211..462 332 29.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19603-PA 611 GM19603-PA 1..590 1..590 3068 97.5 Plus
Dsec\GM10624-PA 588 GM10624-PA 48..434 38..462 549 31.5 Plus
Dsec\GM23247-PA 197 GM23247-PA 1..88 378..462 148 34.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14815-PA 611 GD14815-PA 1..590 1..590 3071 97.6 Plus
Dsim\GD19609-PA 570 GD19609-PA 2..416 5..462 565 31.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13501-PA 616 GJ13501-PA 15..553 15..553 2769 94.4 Plus
Dvir\GJ24553-PA 397 GJ24553-PA 124..374 211..462 596 47 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19071-PA 631 GK19071-PA 23..550 21..550 2568 91.2 Plus
Dwil\GK13782-PA 469 GK13782-PA 60..310 211..458 548 42.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19612-PA 611 GE19612-PA 1..590 1..590 3035 96.4 Plus
Dyak\GE24166-PA 557 GE24166-PA 12..401 20..462 506 29.6 Plus