BDGP Sequence Production Resources |
Search the DGRC for LD24540
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 245 |
Well: | 40 |
Vector: | pOT2 |
Associated Gene/Transcript | ligatin-RA |
Protein status: | LD24540.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1784 |
Gene | Date | Evidence |
---|---|---|
CG31426 | 2001-07-04 | Blastp of sequenced clone |
CG31426 | 2003-01-01 | Sim4 clustering to Release 3 |
ligatin | 2008-04-29 | Release 5.5 accounting |
ligatin | 2008-08-15 | Release 5.9 accounting |
ligatin | 2008-12-18 | 5.12 accounting |
1784 bp (1784 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051703
> LD24540.complete AACTCCTCAAGTGCACACCACCAAACACAGATGTTTCTCAAGCCGTACAG ACCCAAGAGCAGTGCTGCCCTCAAGGGATCCGATAGCAAGAAGTTCCGGC AGCGCGTGGAGGCGGCGTTCCCCCATGTGTCCGTGGATCAGCTGGTGCCG GCGAAGGCGGCGGTGACCCAGGTGAAGATCCTAACGCACGGCGGTGTTCA GAGCATGGTCTACTGCGTGGACAAGTTGCCTTTGTTCTTCGAGCTGGACG GCGGTCAACTTGTGCCCACCCTGTACACCCTGTGGATCGTTCCGGACATC CTGCCCTATTTCACCACCCACGAGGGTGTGTTACCCAAGCTGACGAACGG AGCGGATCTCATGCTGCCCGGAGTGGTGCCCCTGGGCGTGGGACTGAGCA TGTACGGGCACTTCAAAAAGGGACAGTTGATGGCCGTAAACCTCACAAAC AACAAATCTGCGGTGGGCGTGGGCCAGTTGGCTCGCTCCAGCGATGAACT GTACATGTGCGGAGGTCACGGTGTGGCCATCAAGATGCTCCACCTCTTTG GGGACAAGCTCTGGTCGCATGAGCCCAGTCTGGTGCAGCAAATCCCGCTG GTCAAGACAAAGGCCTTGTCTGGCGAGGATTTCCCTGCTCTTGGGTCTGA GACGGAAAGGAGAAAGACCGCCAGCCCAGCTACTCCCGCTCCTGTGACCT TCGCTACGGTGGCCCAAACCGAGGAACTGGAAACGGAAACTGCTGCTCTG ACCTTGGAAAGCCAGGAAGCTCCCGAGTCCGACGAAGAAGCCGTGGAGGA AGCCTCACCAGAACTTATACTCAAGAATGCCTTCCTCTCCGCCTTGAAAA ACCATGGAAAGAAGCTGCCCCTGCCTCTGCTGACGAGCAATTTCTACAGA CTCTATGTGGTCACGGAGGCCACGGAGCAAATCGACCTGAAGAAGACGCG CTACAAAAAGCTCTCCAACTTTCTGGCCGAGATGGTGGACCAAGGATTCA TTGTGGTGCGGGAGGAGAGCAAGGGAGTGGATAAAATCACATCTGTGGAC CTGGAGCACCCCGAAGTGGTGAACTTTATAACCGATGTCAAGGCAAGCGA AGCTAATGGAGCGGCGTCCGAGACGCCCCTGTTCCACTCCGAGCTGAAGG AGATGTACATAGTGACCGATGTTACGGCGGCCTTCTTCACCAAGCTGAAT TACAAGCGCGGCGAGGGAATCCCGGCGGGTCAGATCAAGAAGATTGTGCG GGAGTACGTGAGCAAACATGGTCTCCTCCATCCGCTGACCAAGCTGGTGC GCCCCGACGACACTCTGATCGAGCTGTATGGTAACAGAGAGGTTTCGTTA AGCGAGATGTGCTCCCTCATCACCAGCAAGATGGAGCACTCCTACCAGAT GTGCAGCGGCAAAGATACGAGCGGGAAGCCCCTCATCCAGATGTCCCTGG CCACGCGATCGGGCAACAAGAAGGTGACGCTGGTCAGCAACATCGAGGCG TACGGCATCATCCTGGCCGAGTTCATCAAGCTGTGCAAGCAGGGAGCCGC CGCCAGCACCAGTGTGGTGAAACTGCCGCACCAAAAGCACGAGCAGCTGC AAATCCAGGGCAACCAGGTGCGATTTGTGCACACGCTGCTCACGGAAACG TACAAGGTGCCGCCCAAGTGCATCCTGGGCCTGGAATTGGCCAAGGACGG CAAGAAGAATAAGAAGAAGTGAGCCGGACAATAAATGAAGCCTCCTCCGC CTGTCCTCTTGAGTGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ligatin-RA | 1932 | ligatin-RA | 158..1932 | 1..1775 | 8830 | 99.8 | Plus |
ligatin.a | 1841 | ligatin.a | 72..1841 | 1..1775 | 8730 | 99.5 | Plus |
Pglym78-RB | 1487 | Pglym78-RB | 1119..1487 | 1775..1407 | 1815 | 99.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 24972767..24974102 | 431..1766 | 99 | <- | Minus |
chr3R | 24974161..24974590 | 1..430 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 1..1692 | 31..1722 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 1..1692 | 31..1722 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 1..1692 | 31..1722 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 1..1692 | 31..1722 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 1..1692 | 31..1722 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 72..1837 | 1..1766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 72..1837 | 1..1766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 76..1841 | 1..1766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 72..1837 | 1..1766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ligatin-RA | 76..1841 | 1..1766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29149896..29151231 | 431..1766 | 99 | <- | Minus |
3R | 29151290..29151719 | 1..430 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29149896..29151231 | 431..1766 | 99 | <- | Minus |
3R | 29151290..29151719 | 1..430 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29149896..29151231 | 431..1766 | 99 | <- | Minus |
3R | 29151290..29151719 | 1..430 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 24975618..24976953 | 431..1766 | 99 | <- | Minus |
arm_3R | 24977012..24977441 | 1..430 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 28890727..28892062 | 431..1766 | 99 | <- | Minus |
3R | 28892121..28892550 | 1..430 | 100 | Minus |
Translation from 0 to 1721
> LD24540.hyp NSSSAHHQTQMFLKPYRPKSSAALKGSDSKKFRQRVEAAFPHVSVDQLVP AKAAVTQVKILTHGGVQSMVYCVDKLPLFFELDGGQLVPTLYTLWIVPDI LPYFTTHEGVLPKLTNGADLMLPGVVPLGVGLSMYGHFKKGQLMAVNLTN NKSAVGVGQLARSSDELYMCGGHGVAIKMLHLFGDKLWSHEPSLVQQIPL VKTKALSGEDFPALGSETERRKTASPATPAPVTFATVAQTEELETETAAL TLESQEAPESDEEAVEEASPELILKNAFLSALKNHGKKLPLPLLTSNFYR LYVVTEATEQIDLKKTRYKKLSNFLAEMVDQGFIVVREESKGVDKITSVD LEHPEVVNFITDVKASEANGAASETPLFHSELKEMYIVTDVTAAFFTKLN YKRGEGIPAGQIKKIVREYVSKHGLLHPLTKLVRPDDTLIELYGNREVSL SEMCSLITSKMEHSYQMCSGKDTSGKPLIQMSLATRSGNKKVTLVSNIEA YGIILAEFIKLCKQGAAASTSVVKLPHQKHEQLQIQGNQVRFVHTLLTET YKVPPKCILGLELAKDGKKNKKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ligatin-PA | 563 | CG31426-PA | 1..563 | 11..573 | 2866 | 100 | Plus |
Translation from 30 to 1721
> LD24540.pep MFLKPYRPKSSAALKGSDSKKFRQRVEAAFPHVSVDQLVPAKAAVTQVKI LTHGGVQSMVYCVDKLPLFFELDGGQLVPTLYTLWIVPDILPYFTTHEGV LPKLTNGADLMLPGVVPLGVGLSMYGHFKKGQLMAVNLTNNKSAVGVGQL ARSSDELYMCGGHGVAIKMLHLFGDKLWSHEPSLVQQIPLVKTKALSGED FPALGSETERRKTASPATPAPVTFATVAQTEELETETAALTLESQEAPES DEEAVEEASPELILKNAFLSALKNHGKKLPLPLLTSNFYRLYVVTEATEQ IDLKKTRYKKLSNFLAEMVDQGFIVVREESKGVDKITSVDLEHPEVVNFI TDVKASEANGAASETPLFHSELKEMYIVTDVTAAFFTKLNYKRGEGIPAG QIKKIVREYVSKHGLLHPLTKLVRPDDTLIELYGNREVSLSEMCSLITSK MEHSYQMCSGKDTSGKPLIQMSLATRSGNKKVTLVSNIEAYGIILAEFIK LCKQGAAASTSVVKLPHQKHEQLQIQGNQVRFVHTLLTETYKVPPKCILG LELAKDGKKNKKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22936-PA | 563 | GF22936-PA | 1..563 | 1..562 | 2680 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12033-PA | 563 | GG12033-PA | 1..554 | 1..554 | 2850 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23224-PA | 553 | GH23224-PA | 1..553 | 1..562 | 2315 | 76.9 | Plus |
Dgri\GH23585-PA | 502 | GH23585-PA | 1..502 | 1..562 | 2019 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eIF2D-PA | 563 | CG31426-PA | 1..563 | 1..563 | 2866 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24380-PA | 568 | GI24380-PA | 1..568 | 1..562 | 2331 | 77.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23601-PA | 574 | GL23601-PA | 1..565 | 1..554 | 2510 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16246-PA | 574 | GA16246-PA | 1..565 | 1..554 | 2519 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12258-PA | 563 | GM12258-PA | 1..563 | 1..563 | 2926 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15075-PA | 563 | GD15075-PA | 1..563 | 1..563 | 2936 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14236-PA | 568 | GJ14236-PA | 1..568 | 1..562 | 2426 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11185-PA | 567 | GK11185-PA | 1..567 | 1..563 | 2510 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10471-PA | 563 | GE10471-PA | 1..563 | 1..563 | 2894 | 96.6 | Plus |