Clone LD24540 Report

Search the DGRC for LD24540

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:245
Well:40
Vector:pOT2
Associated Gene/Transcriptligatin-RA
Protein status:LD24540.pep: gold
Preliminary Size:2200
Sequenced Size:1784

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31426 2001-07-04 Blastp of sequenced clone
CG31426 2003-01-01 Sim4 clustering to Release 3
ligatin 2008-04-29 Release 5.5 accounting
ligatin 2008-08-15 Release 5.9 accounting
ligatin 2008-12-18 5.12 accounting

Clone Sequence Records

LD24540.complete Sequence

1784 bp (1784 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051703

> LD24540.complete
AACTCCTCAAGTGCACACCACCAAACACAGATGTTTCTCAAGCCGTACAG
ACCCAAGAGCAGTGCTGCCCTCAAGGGATCCGATAGCAAGAAGTTCCGGC
AGCGCGTGGAGGCGGCGTTCCCCCATGTGTCCGTGGATCAGCTGGTGCCG
GCGAAGGCGGCGGTGACCCAGGTGAAGATCCTAACGCACGGCGGTGTTCA
GAGCATGGTCTACTGCGTGGACAAGTTGCCTTTGTTCTTCGAGCTGGACG
GCGGTCAACTTGTGCCCACCCTGTACACCCTGTGGATCGTTCCGGACATC
CTGCCCTATTTCACCACCCACGAGGGTGTGTTACCCAAGCTGACGAACGG
AGCGGATCTCATGCTGCCCGGAGTGGTGCCCCTGGGCGTGGGACTGAGCA
TGTACGGGCACTTCAAAAAGGGACAGTTGATGGCCGTAAACCTCACAAAC
AACAAATCTGCGGTGGGCGTGGGCCAGTTGGCTCGCTCCAGCGATGAACT
GTACATGTGCGGAGGTCACGGTGTGGCCATCAAGATGCTCCACCTCTTTG
GGGACAAGCTCTGGTCGCATGAGCCCAGTCTGGTGCAGCAAATCCCGCTG
GTCAAGACAAAGGCCTTGTCTGGCGAGGATTTCCCTGCTCTTGGGTCTGA
GACGGAAAGGAGAAAGACCGCCAGCCCAGCTACTCCCGCTCCTGTGACCT
TCGCTACGGTGGCCCAAACCGAGGAACTGGAAACGGAAACTGCTGCTCTG
ACCTTGGAAAGCCAGGAAGCTCCCGAGTCCGACGAAGAAGCCGTGGAGGA
AGCCTCACCAGAACTTATACTCAAGAATGCCTTCCTCTCCGCCTTGAAAA
ACCATGGAAAGAAGCTGCCCCTGCCTCTGCTGACGAGCAATTTCTACAGA
CTCTATGTGGTCACGGAGGCCACGGAGCAAATCGACCTGAAGAAGACGCG
CTACAAAAAGCTCTCCAACTTTCTGGCCGAGATGGTGGACCAAGGATTCA
TTGTGGTGCGGGAGGAGAGCAAGGGAGTGGATAAAATCACATCTGTGGAC
CTGGAGCACCCCGAAGTGGTGAACTTTATAACCGATGTCAAGGCAAGCGA
AGCTAATGGAGCGGCGTCCGAGACGCCCCTGTTCCACTCCGAGCTGAAGG
AGATGTACATAGTGACCGATGTTACGGCGGCCTTCTTCACCAAGCTGAAT
TACAAGCGCGGCGAGGGAATCCCGGCGGGTCAGATCAAGAAGATTGTGCG
GGAGTACGTGAGCAAACATGGTCTCCTCCATCCGCTGACCAAGCTGGTGC
GCCCCGACGACACTCTGATCGAGCTGTATGGTAACAGAGAGGTTTCGTTA
AGCGAGATGTGCTCCCTCATCACCAGCAAGATGGAGCACTCCTACCAGAT
GTGCAGCGGCAAAGATACGAGCGGGAAGCCCCTCATCCAGATGTCCCTGG
CCACGCGATCGGGCAACAAGAAGGTGACGCTGGTCAGCAACATCGAGGCG
TACGGCATCATCCTGGCCGAGTTCATCAAGCTGTGCAAGCAGGGAGCCGC
CGCCAGCACCAGTGTGGTGAAACTGCCGCACCAAAAGCACGAGCAGCTGC
AAATCCAGGGCAACCAGGTGCGATTTGTGCACACGCTGCTCACGGAAACG
TACAAGGTGCCGCCCAAGTGCATCCTGGGCCTGGAATTGGCCAAGGACGG
CAAGAAGAATAAGAAGAAGTGAGCCGGACAATAAATGAAGCCTCCTCCGC
CTGTCCTCTTGAGTGTAAAAAAAAAAAAAAAAAA

LD24540.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
ligatin-RA 1932 ligatin-RA 158..1932 1..1775 8830 99.8 Plus
ligatin.a 1841 ligatin.a 72..1841 1..1775 8730 99.5 Plus
Pglym78-RB 1487 Pglym78-RB 1119..1487 1775..1407 1815 99.4 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24972767..24974102 1766..431 6605 99.6 Minus
chr3R 27901430 chr3R 24974161..24974590 430..1 2150 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29149887..29151231 1775..431 6680 99.8 Minus
3R 32079331 3R 29151290..29151719 430..1 2150 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28890718..28892062 1775..431 6680 99.7 Minus
3R 31820162 3R 28892121..28892550 430..1 2150 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:26:14 has no hits.

LD24540.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:27 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24972767..24974102 431..1766 99 <- Minus
chr3R 24974161..24974590 1..430 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:45 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 1..1692 31..1722 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:55 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 1..1692 31..1722 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:33 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 1..1692 31..1722 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:32 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 1..1692 31..1722 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:52 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 1..1692 31..1722 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:00 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 72..1837 1..1766 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:55 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 72..1837 1..1766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:33 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 76..1841 1..1766 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:32 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 72..1837 1..1766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:52 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 76..1841 1..1766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:27 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29149896..29151231 431..1766 99 <- Minus
3R 29151290..29151719 1..430 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:27 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29149896..29151231 431..1766 99 <- Minus
3R 29151290..29151719 1..430 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:27 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29149896..29151231 431..1766 99 <- Minus
3R 29151290..29151719 1..430 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:33 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24975618..24976953 431..1766 99 <- Minus
arm_3R 24977012..24977441 1..430 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:13 Download gff for LD24540.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28890727..28892062 431..1766 99 <- Minus
3R 28892121..28892550 1..430 100   Minus

LD24540.hyp Sequence

Translation from 0 to 1721

> LD24540.hyp
NSSSAHHQTQMFLKPYRPKSSAALKGSDSKKFRQRVEAAFPHVSVDQLVP
AKAAVTQVKILTHGGVQSMVYCVDKLPLFFELDGGQLVPTLYTLWIVPDI
LPYFTTHEGVLPKLTNGADLMLPGVVPLGVGLSMYGHFKKGQLMAVNLTN
NKSAVGVGQLARSSDELYMCGGHGVAIKMLHLFGDKLWSHEPSLVQQIPL
VKTKALSGEDFPALGSETERRKTASPATPAPVTFATVAQTEELETETAAL
TLESQEAPESDEEAVEEASPELILKNAFLSALKNHGKKLPLPLLTSNFYR
LYVVTEATEQIDLKKTRYKKLSNFLAEMVDQGFIVVREESKGVDKITSVD
LEHPEVVNFITDVKASEANGAASETPLFHSELKEMYIVTDVTAAFFTKLN
YKRGEGIPAGQIKKIVREYVSKHGLLHPLTKLVRPDDTLIELYGNREVSL
SEMCSLITSKMEHSYQMCSGKDTSGKPLIQMSLATRSGNKKVTLVSNIEA
YGIILAEFIKLCKQGAAASTSVVKLPHQKHEQLQIQGNQVRFVHTLLTET
YKVPPKCILGLELAKDGKKNKKK*

LD24540.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
ligatin-PA 563 CG31426-PA 1..563 11..573 2866 100 Plus

LD24540.pep Sequence

Translation from 30 to 1721

> LD24540.pep
MFLKPYRPKSSAALKGSDSKKFRQRVEAAFPHVSVDQLVPAKAAVTQVKI
LTHGGVQSMVYCVDKLPLFFELDGGQLVPTLYTLWIVPDILPYFTTHEGV
LPKLTNGADLMLPGVVPLGVGLSMYGHFKKGQLMAVNLTNNKSAVGVGQL
ARSSDELYMCGGHGVAIKMLHLFGDKLWSHEPSLVQQIPLVKTKALSGED
FPALGSETERRKTASPATPAPVTFATVAQTEELETETAALTLESQEAPES
DEEAVEEASPELILKNAFLSALKNHGKKLPLPLLTSNFYRLYVVTEATEQ
IDLKKTRYKKLSNFLAEMVDQGFIVVREESKGVDKITSVDLEHPEVVNFI
TDVKASEANGAASETPLFHSELKEMYIVTDVTAAFFTKLNYKRGEGIPAG
QIKKIVREYVSKHGLLHPLTKLVRPDDTLIELYGNREVSLSEMCSLITSK
MEHSYQMCSGKDTSGKPLIQMSLATRSGNKKVTLVSNIEAYGIILAEFIK
LCKQGAAASTSVVKLPHQKHEQLQIQGNQVRFVHTLLTETYKVPPKCILG
LELAKDGKKNKKK*

LD24540.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22936-PA 563 GF22936-PA 1..563 1..562 2680 90.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12033-PA 563 GG12033-PA 1..554 1..554 2850 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23224-PA 553 GH23224-PA 1..553 1..562 2315 76.9 Plus
Dgri\GH23585-PA 502 GH23585-PA 1..502 1..562 2019 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2D-PA 563 CG31426-PA 1..563 1..563 2866 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24380-PA 568 GI24380-PA 1..568 1..562 2331 77.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23601-PA 574 GL23601-PA 1..565 1..554 2510 83.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16246-PA 574 GA16246-PA 1..565 1..554 2519 84.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12258-PA 563 GM12258-PA 1..563 1..563 2926 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15075-PA 563 GD15075-PA 1..563 1..563 2936 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14236-PA 568 GJ14236-PA 1..568 1..562 2426 80.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11185-PA 567 GK11185-PA 1..567 1..563 2510 83.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10471-PA 563 GE10471-PA 1..563 1..563 2894 96.6 Plus