Clone LD24566 Report

Search the DGRC for LD24566

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:245
Well:66
Vector:pOT2
Associated Gene/TranscriptCG2701-RA
Protein status:LD24566.pep: gold
Preliminary Size:2200
Sequenced Size:2378

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2701 2001-01-01 Release 2 assignment
CG2701 2001-07-04 Blastp of sequenced clone
CG2701 2003-01-01 Sim4 clustering to Release 3
CG2701 2008-04-29 Release 5.5 accounting
CG2701 2008-08-15 Release 5.9 accounting
CG2701 2008-12-18 5.12 accounting

Clone Sequence Records

LD24566.complete Sequence

2378 bp (2378 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051706

> LD24566.complete
AAATTCGCTAGTTTTATTGAATTTTGTTATTGAAGAAATACCCTAGCAAC
AATTCGAGAGTGTTGCCAGCCAAAGGGGGGGCCGACATGCTGGACAACGA
CACCAGCAACAACAACAACTGCAACCCACAGAATCTGCCACTGGACGAAC
TCAAGTTTGCACTTTCCGGCAAGGATGGGGTGCGCAGGAACGTTCCGGCG
CTGGACGAGCACTGGGTGCAGCGCGAGAAGCCCTTTGCCAGCTATTTGTG
CATGTTGAGCTCCTATGGACGCCTAAAATCCGGAGCTGCACTGGAGGAAT
GGACCTTCGCGGCGAACAATTTCCGTGGGGACATGGAGTTCCTGCTGAGC
CTGACGCAGCACGAATTCTGGTCCTACATGGTGTACGATGAATCGGCCAT
GGCGGCCGTTGTCACATTCCTGCAGCGCGCTAATCCCTACTACAGACAGA
CAGATGTCAGCCGGGACAAGGAGTTGGACCAGGCCCATCTGCTGTACGGA
CAGCTGCTCGATCTCGTCGTGCGTCTGATAATGCGACTGTGCACCGGTAA
GGAATCGGACTCGGAGTGGATTAGCCCGAAGCAACACGGCAGCCTGCTGT
ACAGCAACTACCTGATCTCTGTGCCACTGCTCTTTGATCTGCTCATCGCT
GTTGGCGATGCGGAGCCGGAGAACGTGGAACTGTTGCGCCAGATCTTCGA
CAAGGTGCTGGAAGTGCAGCCGGAGTACCAAAAGGATCTGAAGGAGGCGC
TGATCTTCTACGAGAGCGCTTTCCTCAGCATGCAGATCCAGGTGGAGAAC
GAGGGCTGCGAAGGTGCTGGCGGCGGGGCGTCTCTGGACGTCGACTTGGA
GACGCCCTACGACGATGTGGTGCTCTTCGCCATGGACTGCGCATACACGC
TGCGCCTGCTGCTGCTCCTCTGTCCCCAGCTATTGGAAACCATCGAACAG
CTGCGTTTGGCCCCAAGCATTGCCAATTTCTATGACATGACTGTGCCCAT
GTTGTACAAGAACATCTACTTGGTGAACCCGGGTGCGAGTTCGCTGCGCT
GGCTAAATGAGACGCGCCAGCAATATATCTTCATCGTTCGTCGCGTGGTC
AGCCTGCAGATGGAGTCGGGACGGGGACAGCAGCTGGTGGAAGTGATGCA
GGAGTGCCTTTCCGCCCAGAACTTCGTTGTGGACTACCAGCGGCAGTTTC
CGCTGGAGCACGACATGAAGCTGCTGATCCAACGTTGCCCAAATATCAAG
AACTACGAGGTGGACTTCGTGGTGTCCGGTTATCAGAAGGCACTGGCCAG
CTGCCCCAACGGCATAATGGCCGACGATATGGCCAGTAACGGTGTCCAAG
TTACGGGGAACGTCCAGGACGAGGAATTCAAGAACGGCGACTCCTCGCGC
ACTTCTCCACAGCCGTCGCCGACGGCCAACGGAACGACAAGGGACATTGA
CTTGGAAGTCACCGCCGTGCTGGAAGTGCTGCCCGATCTGGGCAGTGGCT
TCATAAGGCGCCTCCTCATCCGCTACGATAACAGCGAGCAGGTCATTGCC
GCCATTCTGGACGACAATCTGCCGCCGGATCTAGCGCAGATGGACCGACA
GGAGGTGTACATTCCGCCCGACCCGCAGGACAAACAGCAACGCCAAACGG
GCCTGCGACACTTCAACGTTCACGACGGCGATCGCTACGACGTGCTGACG
CGGGACCAGCCCGAGTGCATTATCAAGCAGGGCAAGGGATTGCCGGGAGC
GCCACGCAATGCGGAACAGTTGCTGGACGACAAGCGCGACCTGAAGCAGC
TAAAGGAGCGCTACCAGAAGTACGCCATGGTCGAGGAGACCACGCTCGAG
AGGGGCGAGTATGACGACGAGTACGACGACAGCTACGAGGCTCAAAACGA
GGGTCAAGCGCCGCCTGTGAGTCTGCTGCGCGGAAGGCTCCAGGAAGCCG
CCTCCAGTTCGGCGTACAACGCACAGGATGAGCTGGAGAACGACGACGAG
GAGAGCTCCGGCGGCCATTCGGACCCGGAGCCGTCGATGCGCACCAACAG
AGACTTTTGCGAGAATCCAGAGGTGATACGCGCCCGCTACGAGCAGCGCC
AGTTATCCAAATACGGCCAAAAGAGTGGTGGACATGGAGCGAGTCCCTCT
GTGGTCGGAGCACCCAAGGGCCAGGGGCAGTCCCAGCAGACGCAGCGCAG
TCGTGGCCAAAAGGAGGCCCACAAGTCCACTCGTGCCAATCATAATCGCA
AGGCAGGAGCAGCCTTCAAGCGCAGCAAGGGCATGATGGGTTAGGCGCAG
CGCAGCTCGATAGAGGGGATTTAGATTGAAATAAAATTATCTAAAATTGG
TGTATCTGTAAAAAAAAAAAAAAAAAAA

LD24566.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-RA 2473 CG2701-RA 117..2473 1..2357 11785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2611454..2612566 2359..1247 5565 100 Minus
chrX 22417052 chrX 2612981..2613583 967..365 3015 100 Minus
chrX 22417052 chrX 2612629..2612909 1246..966 1405 100 Minus
chrX 22417052 chrX 2613874..2614077 204..1 1020 100 Minus
chrX 22417052 chrX 2613643..2613804 364..203 810 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2717637..2718750 2360..1247 5570 100 Minus
X 23542271 X 2719165..2719767 967..365 3015 100 Minus
X 23542271 X 2718813..2719093 1246..966 1405 100 Minus
X 23542271 X 2720058..2720261 204..1 1020 100 Minus
X 23542271 X 2719827..2719988 364..203 810 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2725735..2726848 2360..1247 5570 100 Minus
X 23527363 X 2727263..2727865 967..365 3015 100 Minus
X 23527363 X 2726911..2727191 1246..966 1405 100 Minus
X 23527363 X 2728156..2728359 204..1 1020 100 Minus
X 23527363 X 2727925..2728086 364..203 810 100 Minus
Blast to na_te.dros performed 2019-03-15 22:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7904..7988 39..125 124 62.1 Plus
TART-C 11124 TART-C TARTC 11124bp 9348..9432 39..125 124 62.1 Plus

LD24566.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:13 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2613643..2613803 204..364 100 <- Minus
chrX 2613875..2614077 1..203 100   Minus
chrX 2611454..2612566 1247..2359 100 <- Minus
chrX 2612629..2612907 968..1246 100 <- Minus
chrX 2612981..2613583 365..967 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:48 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 1..2208 87..2294 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:46 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 1..2208 87..2294 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:18:36 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 1..2208 87..2294 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:23 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 1..2208 87..2294 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:37 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 1..2208 87..2294 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:47 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 65..2421 1..2357 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:46 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 65..2421 1..2357 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:18:36 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 67..2425 1..2359 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:23 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 65..2421 1..2357 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:37 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 67..2425 1..2359 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:13 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
X 2717638..2718750 1247..2359 100 <- Minus
X 2718813..2719091 968..1246 100 <- Minus
X 2719165..2719767 365..967 100 <- Minus
X 2719827..2719987 204..364 100 <- Minus
X 2720059..2720261 1..203 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:13 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
X 2717638..2718750 1247..2359 100 <- Minus
X 2718813..2719091 968..1246 100 <- Minus
X 2719165..2719767 365..967 100 <- Minus
X 2719827..2719987 204..364 100 <- Minus
X 2720059..2720261 1..203 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:13 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
X 2717638..2718750 1247..2359 100 <- Minus
X 2718813..2719091 968..1246 100 <- Minus
X 2719165..2719767 365..967 100 <- Minus
X 2719827..2719987 204..364 100 <- Minus
X 2720059..2720261 1..203 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:18:36 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2611671..2612783 1247..2359 100 <- Minus
arm_X 2612846..2613124 968..1246 100 <- Minus
arm_X 2613198..2613800 365..967 100 <- Minus
arm_X 2613860..2614020 204..364 100 <- Minus
arm_X 2614092..2614294 1..203 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:03 Download gff for LD24566.complete
Subject Subject Range Query Range Percent Splice Strand
X 2725736..2726848 1247..2359 100 <- Minus
X 2726911..2727189 968..1246 100 <- Minus
X 2727263..2727865 365..967 100 <- Minus
X 2727925..2728085 204..364 100 <- Minus
X 2728157..2728359 1..203 100   Minus

LD24566.hyp Sequence

Translation from 86 to 2293

> LD24566.hyp
MLDNDTSNNNNCNPQNLPLDELKFALSGKDGVRRNVPALDEHWVQREKPF
ASYLCMLSSYGRLKSGAALEEWTFAANNFRGDMEFLLSLTQHEFWSYMVY
DESAMAAVVTFLQRANPYYRQTDVSRDKELDQAHLLYGQLLDLVVRLIMR
LCTGKESDSEWISPKQHGSLLYSNYLISVPLLFDLLIAVGDAEPENVELL
RQIFDKVLEVQPEYQKDLKEALIFYESAFLSMQIQVENEGCEGAGGGASL
DVDLETPYDDVVLFAMDCAYTLRLLLLLCPQLLETIEQLRLAPSIANFYD
MTVPMLYKNIYLVNPGASSLRWLNETRQQYIFIVRRVVSLQMESGRGQQL
VEVMQECLSAQNFVVDYQRQFPLEHDMKLLIQRCPNIKNYEVDFVVSGYQ
KALASCPNGIMADDMASNGVQVTGNVQDEEFKNGDSSRTSPQPSPTANGT
TRDIDLEVTAVLEVLPDLGSGFIRRLLIRYDNSEQVIAAILDDNLPPDLA
QMDRQEVYIPPDPQDKQQRQTGLRHFNVHDGDRYDVLTRDQPECIIKQGK
GLPGAPRNAEQLLDDKRDLKQLKERYQKYAMVEETTLERGEYDDEYDDSY
EAQNEGQAPPVSLLRGRLQEAASSSAYNAQDELENDDEESSGGHSDPEPS
MRTNRDFCENPEVIRARYEQRQLSKYGQKSGGHGASPSVVGAPKGQGQSQ
QTQRSRGQKEAHKSTRANHNRKAGAAFKRSKGMMG*

LD24566.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-PA 735 CG2701-PA 1..735 1..735 3825 100 Plus

LD24566.pep Sequence

Translation from 86 to 2293

> LD24566.pep
MLDNDTSNNNNCNPQNLPLDELKFALSGKDGVRRNVPALDEHWVQREKPF
ASYLCMLSSYGRLKSGAALEEWTFAANNFRGDMEFLLSLTQHEFWSYMVY
DESAMAAVVTFLQRANPYYRQTDVSRDKELDQAHLLYGQLLDLVVRLIMR
LCTGKESDSEWISPKQHGSLLYSNYLISVPLLFDLLIAVGDAEPENVELL
RQIFDKVLEVQPEYQKDLKEALIFYESAFLSMQIQVENEGCEGAGGGASL
DVDLETPYDDVVLFAMDCAYTLRLLLLLCPQLLETIEQLRLAPSIANFYD
MTVPMLYKNIYLVNPGASSLRWLNETRQQYIFIVRRVVSLQMESGRGQQL
VEVMQECLSAQNFVVDYQRQFPLEHDMKLLIQRCPNIKNYEVDFVVSGYQ
KALASCPNGIMADDMASNGVQVTGNVQDEEFKNGDSSRTSPQPSPTANGT
TRDIDLEVTAVLEVLPDLGSGFIRRLLIRYDNSEQVIAAILDDNLPPDLA
QMDRQEVYIPPDPQDKQQRQTGLRHFNVHDGDRYDVLTRDQPECIIKQGK
GLPGAPRNAEQLLDDKRDLKQLKERYQKYAMVEETTLERGEYDDEYDDSY
EAQNEGQAPPVSLLRGRLQEAASSSAYNAQDELENDDEESSGGHSDPEPS
MRTNRDFCENPEVIRARYEQRQLSKYGQKSGGHGASPSVVGAPKGQGQSQ
QTQRSRGQKEAHKSTRANHNRKAGAAFKRSKGMMG*

LD24566.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22485-PA 731 GF22485-PA 1..731 1..735 2792 72.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18610-PA 733 GG18610-PA 1..733 1..735 3144 86.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11942-PA 746 GH11942-PA 1..745 1..734 2393 62 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-PA 735 CG2701-PA 1..735 1..735 3825 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14728-PA 727 GI14728-PA 5..726 9..734 2182 58.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19809-PA 740 GL19809-PA 1..739 1..734 2824 73.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15436-PA 740 GA15436-PA 1..739 1..734 2837 73.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18858-PA 735 GM18858-PA 1..735 1..735 3564 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18535-PA 724 GJ18535-PA 9..724 8..735 2526 66.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10246-PA 757 GK10246-PA 1..756 1..734 2435 64.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16925-PA 736 GE16925-PA 1..736 1..735 3057 85.4 Plus