Clone LD24607 Report

Search the DGRC for LD24607

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:246
Well:7
Vector:pOT2
Associated Gene/TranscriptSpec2-RA
Protein status:LD24607.pep: gold
Preliminary Size:2200
Sequenced Size:1716

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2911 2001-01-01 Release 2 assignment
CG14672 2001-01-01 Release 2 assignment
CG14672 2001-07-04 Blastp of sequenced clone
Spec2 2008-04-29 Release 5.5 accounting
Spec2 2008-08-15 Release 5.9 accounting
CG2911 2008-08-15 Release 5.9 accounting
Spec2 2008-12-18 5.12 accounting
CG2911 2008-12-18 5.12 accounting

Clone Sequence Records

LD24607.complete Sequence

1716 bp (1716 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060373

> LD24607.complete
CTAAACGCGCTTTTTAAACGAAAGAGAGGCAGTAGATAGAAGACGCGAGT
TAAGTGCTGACGGAATACAGCTTCACATGACGACATTTGCTATTTGCGGG
CGAGTGCAAGGCGTGTGCTTCGGCGTTCGAAAAAAGTGCTGAGAGGAAGA
GACTGAAAAAGTTCTGAAAGCGAGTGGGTCGTGCCTACCGCTCCCACCCT
GCCACCCCCACAAAACAACGGTGTTCTCACTTAATAAACAAATCGACGGA
GCAACAAGAGATTTCCACACGTGATCTGGGAGCAGGAAAGCCGTCTCACC
TTATAAGGAGCCGAGGTGCATAGCCCACGCTACACAACTCTACGTGCACA
GCCAACCTGTCGGGGAGCAGCTGCCTCACGATTGATCGCCCGCAATACCA
GAAGACTGAGTCCCCGTCCAGCGCCAGCCAGCGAGCCAGGAGCAAGGGGA
AGATGGCCAGCACCGGCGAGATCTGGCTGCAGTGGTTTTCGTGCTGCTTC
CAGCAGCAGCGCTCGCCCTCCCGCCGCCCACACCAACGCCTGCGCATCGA
CCGGTCCATGATCGGCAATCCCACCAACTTCGTCCACACGGGCCACATCG
GATCCGCGGACGTGGAGCTGTCGGCCAACCGCCTCAACGCGATCTCCACC
CAGATGCAGAGCAAAGGCGGCTACGAGACCAACTCGATACACTCGCTACA
TGCCTGCTGATGGAAGCCCCCATCACCTGGCAACATCCCCGCTATCAAGT
GCATTTCGTGCAATTTTCCACAGAGGAGGATGACGGCAAAGGAGAGGAGC
AGCAGACATACCTTTTACGATTCGTGCTATCGGGCGAGGAGGAGGACCAA
AATGGGTGGGAGGCCTGAGCGGCGCACAAAGCTGGAAGTCACGAGGAGGT
GCTTAGATTAGGTTCCACATAAGAAAAAACCAGACTGCGCGACAACGGAA
TGCATTCCGGCTTTTAACCGCGGACCTACTTGATTTTGGGTGATTTGCCT
TTTGTGAGTATTAGCTAAATGAAAAATCGCAAAAGAGTGCCAAGCGACAA
AATCAACCGACAATTAAGCCAGTTTCAGGCATATATATGTATGTAAACAC
AGAGTCAGTTTGAGGATTAGGTAGCATTATTAGATCTAATTAATGAGGAA
AGAAGGAAATCGAAAATCGAACTACCCGTTCAGTTCCTATCCATGATAAG
TACCATTTCCAAAACCCCATTTTCGAGATCGTTTTTAGAGCTTTTACGAA
AACTGCCTTATAATCACAACCAGTCTGACCTGACCTGATCCATGGTATTT
GGCTGAAACAGTGGAACTAGCGAATCATAATTTACAAAAGCTAATATAGC
ACTTACACAGCGTTTATACACAGCACAGTGACGCACAATCATTTTCAACA
CACAAAGTAATCGGTTTTAGATCGTTTTTGATATAAATCTCATATGCGAG
TACTGAGGAGATTCTACGCACGTCAGGATTCGAGGATTATGTTGTTTCTG
GGCCAGCGACAATGCACCTAAGATGGACTATGGAGTACCTTTGTAGAACC
CTGATTTAAGAAACAAAAATATATAGTTGTGAAATCGAATGCCGTTGTAG
ATAACCGAGGTGAGGAGTTTAGAATGCGTTGGGTTTTAAGCATATAGACT
AATTTATTTAAGCAATAATTTATGGAAATATATATATATTTAAAATCAAA
AAAAAAAAAAAAAAAA

LD24607.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Spec2-RA 1747 Spec2-RA 42..1741 1..1699 8445 99.8 Plus
nc_14812.a 1312 nc_14812.a 307..1304 702..1699 4990 100 Plus
nc_14812.a 1312 nc_14812.a 1..307 2..308 1535 100 Plus
CG2911-RB 891 CG2911-RB 8..314 1..307 1535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1442313..1443312 1697..698 4985 99.9 Minus
chr3R 27901430 chr3R 1444137..1444533 702..306 1985 100 Minus
chr3R 27901430 chr3R 1449432..1449739 308..1 1540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5616652..5617653 1699..698 4995 99.9 Minus
3R 32079331 3R 5618478..5618874 702..306 1985 100 Minus
3R 32079331 3R 5623774..5624081 308..1 1540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5357483..5358484 1699..698 4995 99.9 Minus
3R 31820162 3R 5359309..5359705 702..306 1985 100 Minus
3R 31820162 3R 5364605..5364912 308..1 1540 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:05:40 has no hits.

LD24607.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:06:45 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1442339..1443308 702..1671 100 <- Minus
chr3R 1444138..1444528 311..701 100 <- Minus
chr3R 1449429..1449739 1..310 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:53 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 1..258 453..710 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:47 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 1..258 453..710 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:04 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 1..258 453..710 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:24 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 1..258 453..710 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:26:14 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 1..258 453..710 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:49 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 42..1739 1..1697 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:47 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 42..1739 1..1697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:04 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 45..1738 1..1697 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:24 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 42..1739 1..1697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:26:14 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
Spec2-RA 45..1738 1..1697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:45 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5616654..5617649 702..1697 100 <- Minus
3R 5618479..5618869 311..701 100 <- Minus
3R 5623771..5624081 1..310 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:45 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5616654..5617649 702..1697 100 <- Minus
3R 5618479..5618869 311..701 100 <- Minus
3R 5623771..5624081 1..310 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:45 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5616654..5617649 702..1697 100 <- Minus
3R 5618479..5618869 311..701 100 <- Minus
3R 5623771..5624081 1..310 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:04 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1442376..1443371 702..1697 100 <- Minus
arm_3R 1444201..1444591 311..701 100 <- Minus
arm_3R 1449493..1449803 1..310 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:05 Download gff for LD24607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5357485..5358480 702..1697 100 <- Minus
3R 5359310..5359700 311..701 100 <- Minus
3R 5364602..5364912 1..310 99   Minus

LD24607.pep Sequence

Translation from 452 to 709

> LD24607.pep
MASTGEIWLQWFSCCFQQQRSPSRRPHQRLRIDRSMIGNPTNFVHTGHIG
SADVELSANRLNAISTQMQSKGGYETNSIHSLHAC*

LD24607.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18659-PA 172 GF18659-PA 88..172 1..85 446 96.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10922-PA 85 GG10922-PA 1..84 1..84 445 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17530-PA 88 GH17530-PA 1..88 1..85 429 95.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Spec2-PA 85 CG14672-PA 1..85 1..85 459 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22523-PA 85 GI22523-PA 1..85 1..85 456 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23024-PA 95 GL23024-PA 1..84 1..84 425 94 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13165-PB 85 GA13165-PB 1..85 1..85 435 95.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10611-PA 85 GM10611-PA 1..85 1..85 456 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19599-PA 95 GD19599-PA 1..83 1..83 446 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10127-PA 147 GJ10127-PA 63..147 1..85 464 100 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18946-PA 85 GK18946-PA 1..85 1..85 441 96.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24155-PA 85 GE24155-PA 1..84 1..84 445 98.8 Plus

LD24607.hyp Sequence

Translation from 452 to 709

> LD24607.hyp
MASTGEIWLQWFSCCFQQQRSPSRRPHQRLRIDRSMIGNPTNFVHTGHIG
SADVELSANRLNAISTQMQSKGGYETNSIHSLHAC*

LD24607.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Spec2-PA 85 CG14672-PA 1..85 1..85 459 100 Plus