Clone LD24618 Report

Search the DGRC for LD24618

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:246
Well:18
Vector:pOT2
Associated Gene/Transcriptfbl-RB
Protein status:LD24618.pep: gold
Preliminary Size:1300
Sequenced Size:1904

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5725 2001-01-01 Release 2 assignment
CG5725 2003-01-01 Sim4 clustering to Release 3
CG5725 2003-02-17 Blastp of sequenced clone
fbl 2008-04-29 Release 5.5 accounting
fbl 2008-08-15 Release 5.9 accounting
fbl 2008-12-18 5.12 accounting

Clone Sequence Records

LD24618.complete Sequence

1904 bp (1904 high quality bases) assembled on 2003-02-17

GenBank Submission: BT004483

> LD24618.complete
AGGCTACTAGATTAAAAACTTCTGACGAAAATTTTGTTTTGAAGCTTTTG
TTGAGTGTGCGTGGAACTCGCCTTGGCACTGGAGCGTACAGCACCATTCC
AGAGGACTCCGGGAATGCACGGAACACGTAGCTAACTTGGCCGCCCCAGG
ATTCCGCAGCATCAATGAGCAGAGCAGCACATCCCAGCCCCTGAGACACG
TTCTTGGCCACGAATTCCCGCCTAGATCTCCTCGCTGCCCCTGAAAGGCC
CCCGATTGCAACATCTGTCGGATCATCTTGAAGTGCGTGCGATTCTCCGG
ATAGTCCATTGTTCTGCGGTGAACTGACTCCGTTCAATTGAGTCTTGCAA
TTCATCATGACGGAGGACGAACAGATTAACCTGCGCAATCAGTTGGCGAG
GGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTCACCAAGCTGG
TCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGATCGCGAGGCT
GGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACTCGGCGTACGG
CAAAACCGGACATCGTGATACGCACCTACAGATGGACAATGTCGAGATAC
GCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGACCACGGACATG
GGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCGAGCTGGTGAC
CACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAGCAGGATTTCC
GCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCTGGACACGCTC
ATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGGAGTGCTACTA
CTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAGCAGTTCAATT
TCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATCCGGAGTCTCC
ATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTTCGGGCACGAG
CTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTCACCGGCTGCA
CATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGACAATAGGAAG
GTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTACAACCGCTTTGG
TCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGATGCATCTCAACG
ACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAACGCCACTCTGGTC
ACCATAACGAATAATATCGGCTCCATAGCAAGGATGTGCGCGCTGAATGA
GAAGATCGATAGGGTCGTCTTTGTGGGCAACTTTCTGCGAGTTAACCCCA
TTTCCATGAAGCTGCTGGCGTACGCAATGGAGTTCTGGTCCAATGGCACA
ATGAAGGGTCTTTTCCTGGAGCACGAGGGATACTTTGGGGCTCTGGGTTG
CCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCCCTTAACGACGGAGTGG
AGCATTCAATCCACACTGAATCCGATTCAGCAAGCGAAGCAGCACAGACA
TCTTCTACGGCGGACGAGCCACCAGAAAAGGCGCCCACAAGCAAACACTC
CACTAGATAGTCGCTATAACCACATGTTCCTCCCAAGGGCACCCAACGTG
CGCCAGCCGATTGAAGTGCATGTACAGTAGACCTAAGATCAATAAGGCAA
TGACAATGGCAATGGCAATGACTTTGGTCCTTCGCAGTTCATCTCGGTAT
TTATCGTAATTCTTTCTCGGCTTTAGTTGTAACTTGATGACGCACAAATT
GTAAATGCATGAAATTACGTATGTATGGATAAAGTGCCTGCTAGAAAGCA
ACGAATTTTGGCCCGATCAAATGGCGAACCACAAAAAAAAAAAAAAAAAA
AAAA

LD24618.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RB 2225 fbl-RB 96..1979 1..1884 9420 100 Plus
fbl.h 2437 fbl.h 96..1979 1..1884 9420 100 Plus
fbl.c 1902 fbl.c 27..1902 1..1882 9295 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20379942..20380511 1313..1882 2835 99.8 Plus
chr3L 24539361 chr3L 20373516..20373917 1..402 2010 100 Plus
chr3L 24539361 chr3L 20378970..20379265 579..874 1480 100 Plus
chr3L 24539361 chr3L 20377725..20377904 402..581 900 100 Plus
chr3L 24539361 chr3L 20379513..20379691 999..1177 895 100 Plus
chr3L 24539361 chr3L 20379745..20379884 1176..1315 685 99.3 Plus
chr3L 24539361 chr3L 20379325..20379450 875..1000 630 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390885..20391456 1313..1884 2860 100 Plus
3L 28110227 3L 20384457..20384858 1..402 2010 100 Plus
3L 28110227 3L 20389913..20390208 579..874 1480 100 Plus
3L 28110227 3L 20388668..20388847 402..581 900 100 Plus
3L 28110227 3L 20390456..20390634 999..1177 895 100 Plus
3L 28110227 3L 20390688..20390827 1176..1315 700 100 Plus
3L 28110227 3L 20390268..20390393 875..1000 630 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20383985..20384556 1313..1884 2860 100 Plus
3L 28103327 3L 20377557..20377958 1..402 2010 100 Plus
3L 28103327 3L 20383013..20383308 579..874 1480 100 Plus
3L 28103327 3L 20381768..20381947 402..581 900 100 Plus
3L 28103327 3L 20383556..20383734 999..1177 895 100 Plus
3L 28103327 3L 20383788..20383927 1176..1315 700 100 Plus
3L 28103327 3L 20383368..20383493 875..1000 630 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:35:28 has no hits.

LD24618.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:36:09 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20379515..20379691 1001..1177 100 -> Plus
chr3L 20379747..20379882 1178..1313 99 -> Plus
chr3L 20373516..20373917 1..402 100 -> Plus
chr3L 20377726..20377904 403..581 100 -> Plus
chr3L 20378973..20379265 582..874 100 -> Plus
chr3L 20379325..20379450 875..1000 100 -> Plus
chr3L 20379943..20380511 1314..1882 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:55 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 1..1254 357..1610 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:56 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 1..1254 357..1610 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:10 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 1..1254 357..1610 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:12 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 1..1254 357..1610 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:34:53 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 1..1254 357..1610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:02:48 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 27..1908 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:56 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 27..1908 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:10 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 29..1910 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:12 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 27..1908 1..1882 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:34:53 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 29..1910 1..1882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:09 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20390268..20390393 875..1000 100 -> Plus
3L 20390458..20390634 1001..1177 100 -> Plus
3L 20390690..20390825 1178..1313 100 -> Plus
3L 20389916..20390208 582..874 100 -> Plus
3L 20384457..20384858 1..402 100 -> Plus
3L 20388669..20388847 403..581 100 -> Plus
3L 20390886..20391454 1314..1882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:09 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20390268..20390393 875..1000 100 -> Plus
3L 20390458..20390634 1001..1177 100 -> Plus
3L 20390690..20390825 1178..1313 100 -> Plus
3L 20389916..20390208 582..874 100 -> Plus
3L 20384457..20384858 1..402 100 -> Plus
3L 20388669..20388847 403..581 100 -> Plus
3L 20390886..20391454 1314..1882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:09 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20390268..20390393 875..1000 100 -> Plus
3L 20390458..20390634 1001..1177 100 -> Plus
3L 20390690..20390825 1178..1313 100 -> Plus
3L 20389916..20390208 582..874 100 -> Plus
3L 20384457..20384858 1..402 100 -> Plus
3L 20388669..20388847 403..581 100 -> Plus
3L 20390886..20391454 1314..1882 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:10 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20377557..20377958 1..402 100 -> Plus
arm_3L 20381769..20381947 403..581 100 -> Plus
arm_3L 20383016..20383308 582..874 100 -> Plus
arm_3L 20383368..20383493 875..1000 100 -> Plus
arm_3L 20383558..20383734 1001..1177 100 -> Plus
arm_3L 20383790..20383925 1178..1313 100 -> Plus
arm_3L 20383986..20384554 1314..1882 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:43 Download gff for LD24618.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20377557..20377958 1..402 100 -> Plus
3L 20381769..20381947 403..581 100 -> Plus
3L 20383016..20383308 582..874 100 -> Plus
3L 20383368..20383493 875..1000 100 -> Plus
3L 20383558..20383734 1001..1177 100 -> Plus
3L 20383790..20383925 1178..1313 100 -> Plus
3L 20383986..20384554 1314..1882 100   Plus

LD24618.hyp Sequence

Translation from 356 to 1609

> LD24618.hyp
MTEDEQINLRNQLARAMPWFGMDIGGTLTKLVYFEPKDITPDEQDREAGI
LRNIRRYLTKNSAYGKTGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDMGN
FLSLAKQKGMAELVTTVCATGGGAFKFEQDFRDQVNMKLAKFDELDTLIK
GILFADLHNRTECYYYENARDILKSEKQQFNFSQPFPFILVNVGSGVSIL
AVYGPDNYKRISGTSLGGGTFLGLCCLLTGCTSFEEAIQLATKGDNRKVD
KLVKDIYGGDYNRFGLPGDLVASSFGQMHLNDKRVSVSREDLANATLVTI
TNNIGSIARMCALNEKIDRVVFVGNFLRVNPISMKLLAYAMEFWSNGTMK
GLFLEHEGYFGALGCLLQFNGELAAALNDGVEHSIHTESDSASEAAQTSS
TADEPPEKAPTSKHSTR*

LD24618.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-PB 417 CG5725-PB 1..417 1..417 2171 100 Plus
fbl-PA 419 CG5725-PA 18..419 16..417 2097 100 Plus
fbl-PG 428 CG5725-PG 27..428 16..417 2097 100 Plus
fbl-PC 401 CG5725-PC 1..401 17..417 2093 100 Plus
fbl-PD 401 CG5725-PD 1..401 17..417 2093 100 Plus

LD24618.pep Sequence

Translation from 356 to 1609

> LD24618.pep
MTEDEQINLRNQLARAMPWFGMDIGGTLTKLVYFEPKDITPDEQDREAGI
LRNIRRYLTKNSAYGKTGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDMGN
FLSLAKQKGMAELVTTVCATGGGAFKFEQDFRDQVNMKLAKFDELDTLIK
GILFADLHNRTECYYYENARDILKSEKQQFNFSQPFPFILVNVGSGVSIL
AVYGPDNYKRISGTSLGGGTFLGLCCLLTGCTSFEEAIQLATKGDNRKVD
KLVKDIYGGDYNRFGLPGDLVASSFGQMHLNDKRVSVSREDLANATLVTI
TNNIGSIARMCALNEKIDRVVFVGNFLRVNPISMKLLAYAMEFWSNGTMK
GLFLEHEGYFGALGCLLQFNGELAAALNDGVEHSIHTESDSASEAAQTSS
TADEPPEKAPTSKHSTR*

LD24618.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10336-PA 529 GF10336-PA 128..529 16..417 2023 93.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16111-PA 512 GG16111-PA 112..512 16..417 2100 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16974-PA 531 GH16974-PA 123..516 16..410 1935 90.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-PB 417 CG5725-PB 1..417 1..417 2171 100 Plus
fbl-PG 428 CG5725-PG 27..428 16..417 2097 100 Plus
fbl-PA 419 CG5725-PA 18..419 16..417 2097 100 Plus
fbl-PE 512 CG5725-PE 111..512 16..417 2094 99.8 Plus
fbl-PC 401 CG5725-PC 1..401 17..417 2093 100 Plus
fbl-PD 401 CG5725-PD 1..401 17..417 2093 100 Plus
fbl-PF 342 CG5725-PF 1..342 76..417 1772 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11839-PA 523 GI11839-PA 122..522 16..411 1916 89.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11882-PA 537 GL11882-PA 127..537 16..417 2007 91.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19085-PA 537 GA19085-PA 127..537 16..417 2009 91.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22287-PA 512 GM22287-PA 111..512 16..417 2156 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14883-PA 512 GD14883-PA 111..512 16..417 2158 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13538-PA 528 GJ13538-PA 126..526 16..416 1937 89.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16961-PA 519 GK16961-PA 117..519 16..413 1953 90.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\fbl-PA 418 GE19678-PA 15..418 13..417 2120 97.5 Plus
Dyak\GE19675-PA 504 GE19675-PA 109..467 16..374 1935 99.4 Plus