Clone LD24627 Report

Search the DGRC for LD24627

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:246
Well:27
Vector:pOT2
Associated Gene/TranscriptSlimp-RA
Protein status:LD24627.pep: gold
Preliminary Size:2200
Sequenced Size:1512

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31133 2001-09-19 Blastp of sequenced clone
CG31133 2003-01-01 Sim4 clustering to Release 3
CG31133 2008-04-29 Release 5.5 accounting
CG31133 2008-08-15 Release 5.9 accounting
CG31133 2008-12-18 5.12 accounting

Clone Sequence Records

LD24627.complete Sequence

1512 bp (1512 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060374

> LD24627.complete
TTTGCATTCGATAATAAAAATAATGTTGAGCCTGCGAAGTGTATTAAAAC
ACTGCCTTTCGGCAAAGAAAACGTGTAGCAGAAACATCTCCGCGCTGTAC
ATAACCGGCGATAAAGCGAACGAAAACTATGTGACTCTGCAGCCGTACAT
GGACTTCAATAAAACCTTTGGAGAGCGGCAATTTTTGGAGCAGAGCATCT
CCAGCCGGGGATTGGACATTCGTTTGGAAACTGTGCTCAGCAAGTACGAG
AAGTATAAAACACATCACGCTCAGCTGTCCAAGGTGGCGGAGGAACGCGA
AAGGGTGACCAAGCGCCTAAAGGAGCTAACGAAATCTGGTAGTAGTGCGG
TTCAGCTGGAGGAGTTGAAAGAGCATGGGAAATCGTTGCGCAATGAGCTA
AAGGCTCTGAAGCAGACTCTCTATCCCATAGAGGATGACTTTATTCATGA
CTATCTGCACTTGCCCAACCTTCTGCATGTCCAGTGCCCTGTTGGAGGGG
AGGAAAAGCTTCTCTATCGTCATGGGATACCCAAATCAGAAAATAAGACT
ACATCCCACTTGGCACGCCAGGAACTTGTACATTTTGTAGACAACAATCG
TTACTACTTGATGGAGCAGGCTGCTCTTTTTGACGTAAATGCCATGCAAT
CCCTGGCCCGCTATTTCGTCAACCACGGGCACTTCATTCAAACCGCCAAT
CCGGACTTTGTGCGTTGCGTTCTCCTGGAAGCAAATGCGACACCCTTATC
CGACTATCATCTGGTTCAGGAAGAGCACCTGCAAAACAAGATCAATACCG
CCTATTTGACTGGAGGTGCGTCCTTCGAGAGCTACCTTGGTGCCATGACC
AAGCTGTGCGTGTATCCCTCGGTGCTGCCCCTTCGGTATGTCTGCTGTGG
TCGGAGCTACAACAGAGCGGAAGCGGATTTGTATGGGCCCATTCCTAGTC
TTTATACGGCGACACAAACGAATGCGGTACAAATCTTTGTGGCAACGCAA
ACGGACAACGAAGCGGACTCCCAACTAGAGCATATTCTCAATCTGGCAAC
TGATTTCTACAAAGCACTGGACATACCATTCAGGATTTCTTATGCAACAG
CAGCAGATCTAACTCCGGCGGAGAGTATCCGGGCAGTCATCGAAGTTTAT
GCCCCCTCACTGCAGCGCTATGTGTGTGTGGGACGTATCAGCAACTACGG
AGACTTTGTCTCTAAGCGAATCCTTTTTAGCACGCGGCGGGAGAAGCACT
ATGATTTCTTGCACATGGTGGGCGGACCAGTGCTCTACACCTCGCGACTG
ATAGCAGCTCTTGTTGAGCATGGCGTGCGCTTGGAAGACTGCAAACTTTT
GGGCTCTATTAGTCAGAAACCCGTTCATCAGCAGGATCTACAGCAGTTTA
AGGACCTTTTCACGTAAAAAACGATCGGTGTTTAGTTTCTTGTTGTTTGT
TCTTAGGCCTAACGATAAGTAAAAGTTAAGTTTTACATAAAAAAAAAAAA
AAAAAAAAAAAA

LD24627.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31133-RA 1488 CG31133-RA 1..1488 1..1488 7440 100 Plus
kal-1.a 1984 kal-1.a 1929..1984 1489..1434 280 100 Minus
kal-1-RA 1993 kal-1-RA 1938..1993 1489..1434 280 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19970764..19972250 1488..1 7120 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24147435..24148923 1489..1 7445 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23888266..23889754 1489..1 7445 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:35:31 has no hits.

LD24627.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:36:11 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19970764..19972250 1..1488 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:56 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
CG31133-RA 1..1395 23..1417 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:21 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
CG31133-RA 1..1395 23..1417 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:14 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
Slimp-RA 1..1395 23..1417 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:56 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
CG31133-RA 1..1395 23..1417 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:34:56 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
Slimp-RA 1..1395 23..1417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:58 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
CG31133-RA 1..1488 1..1488 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:21 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
CG31133-RA 1..1488 1..1488 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:14 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
Slimp-RA 45..1532 1..1488 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:57 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
CG31133-RA 1..1488 1..1488 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:34:56 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
Slimp-RA 45..1532 1..1488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:11 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24147436..24148923 1..1488 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:11 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24147436..24148923 1..1488 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:11 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24147436..24148923 1..1488 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:14 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19973158..19974645 1..1488 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:47 Download gff for LD24627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23888267..23889754 1..1488 100   Minus

LD24627.hyp Sequence

Translation from 0 to 1416

> LD24627.hyp
LHSIIKIMLSLRSVLKHCLSAKKTCSRNISALYITGDKANENYVTLQPYM
DFNKTFGERQFLEQSISSRGLDIRLETVLSKYEKYKTHHAQLSKVAEERE
RVTKRLKELTKSGSSAVQLEELKEHGKSLRNELKALKQTLYPIEDDFIHD
YLHLPNLLHVQCPVGGEEKLLYRHGIPKSENKTTSHLARQELVHFVDNNR
YYLMEQAALFDVNAMQSLARYFVNHGHFIQTANPDFVRCVLLEANATPLS
DYHLVQEEHLQNKINTAYLTGGASFESYLGAMTKLCVYPSVLPLRYVCCG
RSYNRAEADLYGPIPSLYTATQTNAVQIFVATQTDNEADSQLEHILNLAT
DFYKALDIPFRISYATAADLTPAESIRAVIEVYAPSLQRYVCVGRISNYG
DFVSKRILFSTRREKHYDFLHMVGGPVLYTSRLIAALVEHGVRLEDCKLL
GSISQKPVHQQDLQQFKDLFT*

LD24627.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Slimp-PA 464 CG31133-PA 1..464 8..471 2401 100 Plus
Aats-ser-PB 417 CG4938-PB 85..376 154..439 180 25 Plus
Aats-ser-PA 417 CG4938-PA 85..376 154..439 180 25 Plus

LD24627.pep Sequence

Translation from 22 to 1416

> LD24627.pep
MLSLRSVLKHCLSAKKTCSRNISALYITGDKANENYVTLQPYMDFNKTFG
ERQFLEQSISSRGLDIRLETVLSKYEKYKTHHAQLSKVAEERERVTKRLK
ELTKSGSSAVQLEELKEHGKSLRNELKALKQTLYPIEDDFIHDYLHLPNL
LHVQCPVGGEEKLLYRHGIPKSENKTTSHLARQELVHFVDNNRYYLMEQA
ALFDVNAMQSLARYFVNHGHFIQTANPDFVRCVLLEANATPLSDYHLVQE
EHLQNKINTAYLTGGASFESYLGAMTKLCVYPSVLPLRYVCCGRSYNRAE
ADLYGPIPSLYTATQTNAVQIFVATQTDNEADSQLEHILNLATDFYKALD
IPFRISYATAADLTPAESIRAVIEVYAPSLQRYVCVGRISNYGDFVSKRI
LFSTRREKHYDFLHMVGGPVLYTSRLIAALVEHGVRLEDCKLLGSISQKP
VHQQDLQQFKDLFT*

LD24627.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18895-PA 461 GF18895-PA 1..460 1..463 1979 78.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12371-PA 464 GG12371-PA 1..464 1..464 2245 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19093-PA 465 GH19093-PA 1..464 1..463 1676 68.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Slimp-PA 464 CG31133-PA 1..464 1..464 2401 100 Plus
SerRS-m-PB 417 CG4938-PB 85..376 147..432 180 25 Plus
SerRS-m-PA 417 CG4938-PA 85..376 147..432 180 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23429-PA 466 GI23429-PA 1..465 1..463 1737 68.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24144-PA 466 GL24144-PA 1..466 1..464 1954 77.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16033-PA 466 GA16033-PA 1..466 1..464 1942 77 Plus
Dpse\GA18540-PA 418 GA18540-PA 76..376 136..432 153 24 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23510-PA 464 GM23510-PA 1..464 1..464 2331 93.8 Plus
Dsec\GM24223-PA 417 GM24223-PA 84..376 146..432 174 25.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18320-PA 464 GD18320-PA 1..464 1..464 2350 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14532-PA 466 GJ14532-PA 1..465 1..463 1783 71.4 Plus
Dvir\GJ14464-PA 427 GJ14464-PA 33..385 84..432 174 24.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11931-PA 465 GK11931-PA 1..464 1..463 1749 69.9 Plus
Dwil\GK11136-PA 420 GK11136-PA 85..377 146..432 153 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10826-PA 464 GE10826-PA 1..464 1..464 2246 90.3 Plus