Clone LD24628 Report

Search the DGRC for LD24628

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:246
Well:28
Vector:pOT2
Associated Gene/TranscriptHmgD-RA
Protein status:LD24628.pep: gold
Preliminary Size:1300
Sequenced Size:944

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17950 2001-01-01 Release 2 assignment
CG17950 2002-05-30 Blastp of sequenced clone
CG17950 2003-01-01 Sim4 clustering to Release 3
HmgD 2008-04-29 Release 5.5 accounting
HmgD 2008-08-15 Release 5.9 accounting
HmgD 2008-12-18 5.12 accounting

Clone Sequence Records

LD24628.complete Sequence

944 bp (944 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118333

> LD24628.complete
CAAGCTCGAAGCAAAAATACACAGTGTAACACTTGTTAAATAGTTTCAAC
AAAAACACATTCAAATATGTCTGATAAGCCAAAACGCCCACTCTCCGCCT
ACATGCTGTGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCC
GGCATCAAGGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGC
AATGAAGGACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACG
ACTACGATCGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCT
GCCAACGGTGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGC
GAAGAAGAGCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCG
AGTAGACTGGCTCATCCCCCACCCTAATCCATCACCAAGTCACACACAAC
CAGCCAGAACCACCCGCAAGCAAACAAGAACACTGGTGGCAACACCACAT
CCAAACATCAGCAACCACAGTCCCCCTTAATAGAATACAAAGCCGCCAAG
CCCGATCATATCTCATCGACAACTTGAACAACGAGATCTGTTGAACATTG
TATCCACAATCACATACGCGAGAGAACAAAAATACGCGATAATAAGGAAA
ATTGTATTTATACACACGAGTTTTTAAGTTTATAGTAGTCGTTTATTTTA
TAATGCCCATATACAAAGAAGAGGACAACCGGCAGGAAAGGAGAAGAAAT
AAGATTAGCAGGATGTGCGTTGAGGTGTTTTTTTTTTCGATCCTGCGGCG
TTTCGCCTGGAAAGGCGAGTCGTTCGGAAAATGAAAGAGAAAAGTAGTCC
CCTTGCATATTATTTGTGTAAAGTAAACGATAATTCCATTATAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD24628.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-RA 1525 HmgD-RA 83..983 1..901 4490 99.8 Plus
HmgD.d 1525 HmgD.d 83..983 1..901 4490 99.8 Plus
HmgD.c 1518 HmgD.c 83..983 1..901 4490 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17602183..17602858 217..892 3255 99.4 Plus
chr2R 21145070 chr2R 17601895..17602109 3..217 1075 100 Plus
chr2R 21145070 chr2R 17584881..17585000 213..94 195 77.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21715692..21716376 217..901 3410 99.9 Plus
2R 25286936 2R 21715404..21715618 3..217 1075 100 Plus
2R 25286936 2R 21698391..21698510 213..94 195 77.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21716891..21717575 217..901 3410 99.8 Plus
2R 25260384 2R 21716603..21716817 3..217 1075 100 Plus
2R 25260384 2R 21699590..21699709 213..94 195 77.5 Minus
Blast to na_te.dros performed on 2019-03-15 18:26:21 has no hits.

LD24628.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:31 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17601894..17602108 1..216 99 -> Plus
chr2R 17602183..17602858 217..892 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:02:57 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 1..339 67..405 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:31 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RC 1..339 67..405 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:41 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 1..339 67..405 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:10 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 1..339 67..405 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:00 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 1..339 67..405 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:08:34 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 54..945 1..892 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:31 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 54..945 1..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:41 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 29..920 1..892 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:10 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 54..945 1..892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:00 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 29..920 1..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:31 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21715403..21715617 1..216 99 -> Plus
2R 21715692..21716367 217..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:31 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21715403..21715617 1..216 99 -> Plus
2R 21715692..21716367 217..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:31 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21715403..21715617 1..216 99 -> Plus
2R 21715692..21716367 217..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:41 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17602908..17603122 1..216 99 -> Plus
arm_2R 17603197..17603872 217..892 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:38 Download gff for LD24628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21716602..21716816 1..216 99 -> Plus
2R 21716891..21717566 217..892 100   Plus

LD24628.pep Sequence

Translation from 66 to 404

> LD24628.pep
MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKS
EWEAKAAKAKDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKK
EESDEDDDDESE*

LD24628.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13265-PA 111 GF13265-PA 1..71 1..71 352 95.8 Plus
Dana\GF11622-PA 111 GF11622-PA 4..80 3..79 301 70.1 Plus
Dana\GF12460-PA 728 GF12460-PA 552..648 2..93 251 54.6 Plus
Dana\GF18856-PA 209 GF18856-PA 8..102 5..95 172 40 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22136-PA 111 GG22136-PA 1..111 1..112 524 97.3 Plus
Dere\GG20749-PA 111 GG20749-PA 4..80 3..79 301 68.8 Plus
Dere\GG19998-PA 724 GG19998-PA 550..626 2..76 239 61 Plus
Dere\GG11142-PA 138 GG11142-PA 7..78 4..72 179 50 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21124-PA 111 GH21124-PA 1..82 1..82 408 96.3 Plus
Dgri\GH20784-PA 111 GH20784-PA 4..80 3..79 303 70.1 Plus
Dgri\GH21151-PA 744 GH21151-PA 557..648 2..106 234 46.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-PD 112 CG17950-PD 1..112 1..112 577 100 Plus
HmgD-PC 112 CG17950-PC 1..112 1..112 577 100 Plus
HmgD-PB 112 CG17950-PB 1..112 1..112 577 100 Plus
HmgD-PA 112 CG17950-PA 1..112 1..112 577 100 Plus
HmgZ-PD 111 CG17921-PD 4..111 3..112 382 64.9 Plus
HmgZ-PC 111 CG17921-PC 4..111 3..112 382 64.9 Plus
HmgZ-PA 111 CG17921-PA 4..111 3..112 382 64.9 Plus
HmgZ-PB 111 CG17921-PB 4..111 3..112 382 64.9 Plus
Ssrp-PA 723 CG4817-PA 552..676 2..112 281 50.4 Plus
tHMG2-PA 133 CG7046-PA 1..78 1..72 169 44.9 Plus
tHMG2-PB 134 CG7046-PB 2..79 1..72 169 44.9 Plus
tHMG1-PA 126 CG7045-PA 1..76 1..70 166 46.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18728-PA 112 GI18728-PA 1..87 1..87 352 89.7 Plus
Dmoj\GI20867-PA 111 GI20867-PA 4..80 3..79 303 70.1 Plus
Dmoj\GI18750-PA 734 GI18750-PA 558..636 2..80 244 55.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16947-PA 111 GL16947-PA 1..71 1..71 346 94.4 Plus
Dper\GL17523-PA 113 GL17523-PA 6..87 3..87 314 70.6 Plus
Dper\GL11071-PA 727 GL11071-PA 556..652 5..100 238 53.6 Plus
Dper\GL23184-PA 82 GL23184-PA 1..66 1..63 149 42.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30453-PC 111 GA30453-PC 1..71 1..71 346 94.4 Plus
Dpse\GA30453-PB 111 GA30453-PB 1..71 1..71 346 94.4 Plus
Dpse\GA30453-PA 111 GA30453-PA 1..71 1..71 346 94.4 Plus
Dpse\GA14726-PA 113 GA14726-PA 6..87 3..87 314 70.6 Plus
Dpse\GA18454-PA 727 GA18454-PA 556..652 5..100 238 53.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15859-PA 112 GM15859-PA 1..112 1..112 550 100 Plus
Dsec\GM13209-PA 111 GM13209-PA 1..71 1..71 332 93 Plus
Dsec\GM15692-PA 111 GM15692-PA 4..80 3..79 301 68.8 Plus
Dsec\GM26441-PA 137 GM26441-PA 1..69 1..63 155 46.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11622-PA 112 GD11622-PA 1..112 1..112 550 100 Plus
Dsim\GD25171-PA 111 GD25171-PA 4..80 3..79 301 68.8 Plus
Dsim\GD25013-PA 689 GD25013-PA 524..594 7..77 220 57.7 Plus
Dsim\GD20959-PA 137 GD20959-PA 1..76 1..70 152 42.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21748-PA 112 GJ21748-PA 1..87 1..87 420 95.4 Plus
Dvir\GJ20604-PA 111 GJ20604-PA 4..80 3..79 308 71.4 Plus
Dvir\GJ21774-PA 729 GJ21774-PA 556..651 2..103 233 47.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15924-PA 111 GK15924-PA 1..89 1..90 428 95.6 Plus
Dwil\GK15658-PA 112 GK15658-PA 4..89 3..91 301 65.2 Plus
Dwil\GK22092-PA 730 GK22092-PA 555..646 5..93 222 50 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HmgD-PA 111 GE12217-PA 1..111 1..112 527 98.2 Plus
Dyak\HmgZ-PA 111 GE13680-PA 4..80 3..79 301 68.8 Plus
Dyak\GE11532-PA 726 GE11532-PA 552..649 2..93 251 55.1 Plus
Dyak\GE10308-PA 138 GE10308-PA 7..78 4..72 179 48.6 Plus

LD24628.hyp Sequence

Translation from 66 to 404

> LD24628.hyp
MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKS
EWEAKAAKAKDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKK
EESDEDDDDESE*

LD24628.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-PD 112 CG17950-PD 1..112 1..112 577 100 Plus
HmgD-PC 112 CG17950-PC 1..112 1..112 577 100 Plus
HmgD-PB 112 CG17950-PB 1..112 1..112 577 100 Plus
HmgD-PA 112 CG17950-PA 1..112 1..112 577 100 Plus
HmgZ-PD 111 CG17921-PD 4..111 3..112 382 64.9 Plus