BDGP Sequence Production Resources |
Search the DGRC for LD24628
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 246 |
Well: | 28 |
Vector: | pOT2 |
Associated Gene/Transcript | HmgD-RA |
Protein status: | LD24628.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 944 |
Gene | Date | Evidence |
---|---|---|
CG17950 | 2001-01-01 | Release 2 assignment |
CG17950 | 2002-05-30 | Blastp of sequenced clone |
CG17950 | 2003-01-01 | Sim4 clustering to Release 3 |
HmgD | 2008-04-29 | Release 5.5 accounting |
HmgD | 2008-08-15 | Release 5.9 accounting |
HmgD | 2008-12-18 | 5.12 accounting |
944 bp (944 high quality bases) assembled on 2002-05-30
GenBank Submission: AY118333
> LD24628.complete CAAGCTCGAAGCAAAAATACACAGTGTAACACTTGTTAAATAGTTTCAAC AAAAACACATTCAAATATGTCTGATAAGCCAAAACGCCCACTCTCCGCCT ACATGCTGTGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCC GGCATCAAGGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGC AATGAAGGACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACG ACTACGATCGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCT GCCAACGGTGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGC GAAGAAGAGCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCG AGTAGACTGGCTCATCCCCCACCCTAATCCATCACCAAGTCACACACAAC CAGCCAGAACCACCCGCAAGCAAACAAGAACACTGGTGGCAACACCACAT CCAAACATCAGCAACCACAGTCCCCCTTAATAGAATACAAAGCCGCCAAG CCCGATCATATCTCATCGACAACTTGAACAACGAGATCTGTTGAACATTG TATCCACAATCACATACGCGAGAGAACAAAAATACGCGATAATAAGGAAA ATTGTATTTATACACACGAGTTTTTAAGTTTATAGTAGTCGTTTATTTTA TAATGCCCATATACAAAGAAGAGGACAACCGGCAGGAAAGGAGAAGAAAT AAGATTAGCAGGATGTGCGTTGAGGTGTTTTTTTTTTCGATCCTGCGGCG TTTCGCCTGGAAAGGCGAGTCGTTCGGAAAATGAAAGAGAAAAGTAGTCC CCTTGCATATTATTTGTGTAAAGTAAACGATAATTCCATTATAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17602183..17602858 | 217..892 | 3255 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 17601895..17602109 | 3..217 | 1075 | 100 | Plus |
chr2R | 21145070 | chr2R | 17584881..17585000 | 213..94 | 195 | 77.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21715692..21716376 | 217..901 | 3410 | 99.9 | Plus |
2R | 25286936 | 2R | 21715404..21715618 | 3..217 | 1075 | 100 | Plus |
2R | 25286936 | 2R | 21698391..21698510 | 213..94 | 195 | 77.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21716891..21717575 | 217..901 | 3410 | 99.8 | Plus |
2R | 25260384 | 2R | 21716603..21716817 | 3..217 | 1075 | 100 | Plus |
2R | 25260384 | 2R | 21699590..21699709 | 213..94 | 195 | 77.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17601894..17602108 | 1..216 | 99 | -> | Plus |
chr2R | 17602183..17602858 | 217..892 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RB | 1..339 | 67..405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RC | 1..339 | 67..405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RA | 1..339 | 67..405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RB | 1..339 | 67..405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RB | 1..339 | 67..405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RA | 54..945 | 1..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RA | 54..945 | 1..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RA | 29..920 | 1..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RA | 54..945 | 1..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgD-RA | 29..920 | 1..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21715403..21715617 | 1..216 | 99 | -> | Plus |
2R | 21715692..21716367 | 217..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21715403..21715617 | 1..216 | 99 | -> | Plus |
2R | 21715692..21716367 | 217..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21715403..21715617 | 1..216 | 99 | -> | Plus |
2R | 21715692..21716367 | 217..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17602908..17603122 | 1..216 | 99 | -> | Plus |
arm_2R | 17603197..17603872 | 217..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21716602..21716816 | 1..216 | 99 | -> | Plus |
2R | 21716891..21717566 | 217..892 | 100 | Plus |
Translation from 66 to 404
> LD24628.pep MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKS EWEAKAAKAKDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKK EESDEDDDDESE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13265-PA | 111 | GF13265-PA | 1..71 | 1..71 | 352 | 95.8 | Plus |
Dana\GF11622-PA | 111 | GF11622-PA | 4..80 | 3..79 | 301 | 70.1 | Plus |
Dana\GF12460-PA | 728 | GF12460-PA | 552..648 | 2..93 | 251 | 54.6 | Plus |
Dana\GF18856-PA | 209 | GF18856-PA | 8..102 | 5..95 | 172 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22136-PA | 111 | GG22136-PA | 1..111 | 1..112 | 524 | 97.3 | Plus |
Dere\GG20749-PA | 111 | GG20749-PA | 4..80 | 3..79 | 301 | 68.8 | Plus |
Dere\GG19998-PA | 724 | GG19998-PA | 550..626 | 2..76 | 239 | 61 | Plus |
Dere\GG11142-PA | 138 | GG11142-PA | 7..78 | 4..72 | 179 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21124-PA | 111 | GH21124-PA | 1..82 | 1..82 | 408 | 96.3 | Plus |
Dgri\GH20784-PA | 111 | GH20784-PA | 4..80 | 3..79 | 303 | 70.1 | Plus |
Dgri\GH21151-PA | 744 | GH21151-PA | 557..648 | 2..106 | 234 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HmgD-PD | 112 | CG17950-PD | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PC | 112 | CG17950-PC | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PB | 112 | CG17950-PB | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PA | 112 | CG17950-PA | 1..112 | 1..112 | 577 | 100 | Plus |
HmgZ-PD | 111 | CG17921-PD | 4..111 | 3..112 | 382 | 64.9 | Plus |
HmgZ-PC | 111 | CG17921-PC | 4..111 | 3..112 | 382 | 64.9 | Plus |
HmgZ-PA | 111 | CG17921-PA | 4..111 | 3..112 | 382 | 64.9 | Plus |
HmgZ-PB | 111 | CG17921-PB | 4..111 | 3..112 | 382 | 64.9 | Plus |
Ssrp-PA | 723 | CG4817-PA | 552..676 | 2..112 | 281 | 50.4 | Plus |
tHMG2-PA | 133 | CG7046-PA | 1..78 | 1..72 | 169 | 44.9 | Plus |
tHMG2-PB | 134 | CG7046-PB | 2..79 | 1..72 | 169 | 44.9 | Plus |
tHMG1-PA | 126 | CG7045-PA | 1..76 | 1..70 | 166 | 46.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18728-PA | 112 | GI18728-PA | 1..87 | 1..87 | 352 | 89.7 | Plus |
Dmoj\GI20867-PA | 111 | GI20867-PA | 4..80 | 3..79 | 303 | 70.1 | Plus |
Dmoj\GI18750-PA | 734 | GI18750-PA | 558..636 | 2..80 | 244 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16947-PA | 111 | GL16947-PA | 1..71 | 1..71 | 346 | 94.4 | Plus |
Dper\GL17523-PA | 113 | GL17523-PA | 6..87 | 3..87 | 314 | 70.6 | Plus |
Dper\GL11071-PA | 727 | GL11071-PA | 556..652 | 5..100 | 238 | 53.6 | Plus |
Dper\GL23184-PA | 82 | GL23184-PA | 1..66 | 1..63 | 149 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30453-PC | 111 | GA30453-PC | 1..71 | 1..71 | 346 | 94.4 | Plus |
Dpse\GA30453-PB | 111 | GA30453-PB | 1..71 | 1..71 | 346 | 94.4 | Plus |
Dpse\GA30453-PA | 111 | GA30453-PA | 1..71 | 1..71 | 346 | 94.4 | Plus |
Dpse\GA14726-PA | 113 | GA14726-PA | 6..87 | 3..87 | 314 | 70.6 | Plus |
Dpse\GA18454-PA | 727 | GA18454-PA | 556..652 | 5..100 | 238 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15859-PA | 112 | GM15859-PA | 1..112 | 1..112 | 550 | 100 | Plus |
Dsec\GM13209-PA | 111 | GM13209-PA | 1..71 | 1..71 | 332 | 93 | Plus |
Dsec\GM15692-PA | 111 | GM15692-PA | 4..80 | 3..79 | 301 | 68.8 | Plus |
Dsec\GM26441-PA | 137 | GM26441-PA | 1..69 | 1..63 | 155 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11622-PA | 112 | GD11622-PA | 1..112 | 1..112 | 550 | 100 | Plus |
Dsim\GD25171-PA | 111 | GD25171-PA | 4..80 | 3..79 | 301 | 68.8 | Plus |
Dsim\GD25013-PA | 689 | GD25013-PA | 524..594 | 7..77 | 220 | 57.7 | Plus |
Dsim\GD20959-PA | 137 | GD20959-PA | 1..76 | 1..70 | 152 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21748-PA | 112 | GJ21748-PA | 1..87 | 1..87 | 420 | 95.4 | Plus |
Dvir\GJ20604-PA | 111 | GJ20604-PA | 4..80 | 3..79 | 308 | 71.4 | Plus |
Dvir\GJ21774-PA | 729 | GJ21774-PA | 556..651 | 2..103 | 233 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15924-PA | 111 | GK15924-PA | 1..89 | 1..90 | 428 | 95.6 | Plus |
Dwil\GK15658-PA | 112 | GK15658-PA | 4..89 | 3..91 | 301 | 65.2 | Plus |
Dwil\GK22092-PA | 730 | GK22092-PA | 555..646 | 5..93 | 222 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\HmgD-PA | 111 | GE12217-PA | 1..111 | 1..112 | 527 | 98.2 | Plus |
Dyak\HmgZ-PA | 111 | GE13680-PA | 4..80 | 3..79 | 301 | 68.8 | Plus |
Dyak\GE11532-PA | 726 | GE11532-PA | 552..649 | 2..93 | 251 | 55.1 | Plus |
Dyak\GE10308-PA | 138 | GE10308-PA | 7..78 | 4..72 | 179 | 48.6 | Plus |
Translation from 66 to 404
> LD24628.hyp MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKS EWEAKAAKAKDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKK EESDEDDDDESE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HmgD-PD | 112 | CG17950-PD | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PC | 112 | CG17950-PC | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PB | 112 | CG17950-PB | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PA | 112 | CG17950-PA | 1..112 | 1..112 | 577 | 100 | Plus |
HmgZ-PD | 111 | CG17921-PD | 4..111 | 3..112 | 382 | 64.9 | Plus |