Clone LD24634 Report

Search the DGRC for LD24634

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:246
Well:34
Vector:pOT2
Associated Gene/Transcriptdbe-RA
Protein status:LD24634.pep: gold
Preliminary Size:1329
Sequenced Size:1210

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4258 2001-01-01 Release 2 assignment
CG4258 2003-01-01 Sim4 clustering to Release 3
CG4258 2003-01-15 Blastp of sequenced clone
dbe 2008-04-29 Release 5.5 accounting
dbe 2008-08-15 Release 5.9 accounting
dbe 2008-12-18 5.12 accounting

Clone Sequence Records

LD24634.complete Sequence

1210 bp (1210 high quality bases) assembled on 2003-01-15

GenBank Submission: AY069529

> LD24634.complete
CCAAAACAAGCGTGCAAGAATCTTACCTGTAGAATTAGCTTCTGAAAACT
CGAGTAACGATGAGCGAAAGTGAAGCGGAGGAGACCAAAATCAGCACCGA
GCCGGTGGACAATGCGTGGTCCATGAAGATCCCTGCCTTCAGGCAGGAGG
ACAACCCGCATGGGATGGTGGAGGAGAGCTCCTTCGCCACGCTGTTTCCC
AAATATCGGGAGCGCTATCTTAAGGAGGTTTGGCCTCTGGTGGAGCAGTG
CTTGGCGGAGCACCACCTGAAGGCGGAGCTAGATTTGATGGAGGGGAGCA
TGGTGGTGAAGACCAGTCGCAAGACCTGGGATCCCTACATCATCATCAAG
GCGCGGGATATGATCAAGCTGATGGCCAGAAGTGTTCCCTTCGAGCAGGC
CAAGCGGGTCCTGCAGGACGACATTGGGTGTGACATCATCAAAATCGGAA
ACCTTGTGCACAAGAAGGAGAAGTTCGTGAAGCGGCGACAGCGTTTGATC
GGACCTAACGGCGCCACCCTTAAGTCCATTGAACTGCTCACCGATTGCTA
CGTTTTGGTTCAAGGAAACACAGTCTCCGCCTTGGGTCCTTACAAGGGCC
TTCAGCAGGTGCGGGATATAGTCCTGGAGACCATGAACAATGTGCACCCC
ATATACAACATTAAGGCTCTGATGATCAAGCGGGAGCTGATGAAGGATCC
GCGTCTGGCCAACGAGGACTGGTCCCGATTCCTGCCCAAGTTCAAGAACA
AAAACATTAGCAAACGCAAGCAGCCGAAGGTCAAGAAGCAAAAGAAGGAG
TACACCCCATTCCCGCCCAGCCAGCCGGAGAGCAAGGTGGACAAGCAGCT
GGCCAGCGGAGAGTACTTCCTCAACCAGGAGCAGAAGCAAGCGAAGCGCA
ACCAGGAGCGCACCGAAAAGCAGAAGGAGGCGGCCAAGCGCCAGGACGAA
CGCCGAAACAAGGACTTTGTCCCGCCCACGGAGGAGTCAGCTGCTTCAAG
TCGGAAGAAGGAGGATGGCTCCTCCTCCAGCAAGGTGGACGTGAAGGCCC
TGAAGGCCAAGCTGATCAAGGCCAACAAGAAGGCGAGGAGCAGCTGATAG
TTTTCCTAGTTTTAATTAGTAGTAGGACCTATTCAATAAAAATTGATTTT
CCATATACAACGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

LD24634.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
dbe-RA 1237 dbe-RA 77..1227 1..1151 5755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 868588..869738 1151..1 5695 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 868685..869835 1151..1 5755 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 868685..869835 1151..1 5755 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:31:08 has no hits.

LD24634.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:31:49 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 868588..869738 1..1151 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:00 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 1..1038 60..1097 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:55:48 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 1..1038 60..1097 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:38 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 1..1038 60..1097 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:47 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 1..1038 60..1097 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:56 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 1..1038 60..1097 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:18 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 77..1227 1..1151 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:55:48 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 77..1227 1..1151 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:38 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 23..1173 1..1151 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:48 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 77..1227 1..1151 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:56 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 23..1173 1..1151 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:49 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
2L 868685..869835 1..1151 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:49 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
2L 868685..869835 1..1151 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:49 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
2L 868685..869835 1..1151 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:38 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 868685..869835 1..1151 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:17:57 Download gff for LD24634.complete
Subject Subject Range Query Range Percent Splice Strand
2L 868685..869835 1..1151 100   Minus

LD24634.hyp Sequence

Translation from 59 to 1096

> LD24634.hyp
MSESEAEETKISTEPVDNAWSMKIPAFRQEDNPHGMVEESSFATLFPKYR
ERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWDPYIIIKARD
MIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPN
GATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYN
IKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTP
FPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRN
KDFVPPTEESAASSRKKEDGSSSSKVDVKALKAKLIKANKKARSS*

LD24634.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
dbe-PA 345 CG4258-PA 1..345 1..345 1770 100 Plus

LD24634.pep Sequence

Translation from 59 to 1096

> LD24634.pep
MSESEAEETKISTEPVDNAWSMKIPAFRQEDNPHGMVEESSFATLFPKYR
ERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWDPYIIIKARD
MIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPN
GATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYN
IKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTP
FPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRN
KDFVPPTEESAASSRKKEDGSSSSKVDVKALKAKLIKANKKARSS*

LD24634.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14827-PA 343 GF14827-PA 1..328 1..328 1541 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24622-PA 345 GG24622-PA 1..345 1..345 1794 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10489-PA 341 GH10489-PA 1..340 1..341 1534 86.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
dbe-PA 345 CG4258-PA 1..345 1..345 1770 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18007-PA 344 GI18007-PA 1..344 1..345 1540 86.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18627-PA 340 GL18627-PA 1..340 1..344 1583 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18062-PA 340 GA18062-PA 1..340 1..344 1589 89.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16638-PA 314 GM16638-PA 1..314 1..345 1589 89 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22935-PA 110 GD22935-PA 15..110 250..345 450 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19628-PA 343 GJ19628-PA 1..343 1..344 1505 86.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24616-PA 347 GK24616-PA 1..333 1..330 1501 86.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15854-PA 344 GE15854-PA 1..344 1..345 1789 97.7 Plus