Clone LD24639 Report

Search the DGRC for LD24639

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:246
Well:39
Vector:pOT2
Associated Gene/Transcriptmmy-RA
Protein status:LD24639.pep: gold
Preliminary Size:2032
Sequenced Size:2036

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9535 2001-01-01 Release 2 assignment
CG9535 2002-12-11 Blastp of sequenced clone
mmy 2008-04-29 Release 5.5 accounting
mmy 2008-08-15 Release 5.9 accounting
mmy 2008-12-18 5.12 accounting

Clone Sequence Records

LD24639.complete Sequence

2036 bp (2036 high quality bases) assembled on 2002-12-11

GenBank Submission: AF145686

> LD24639.complete
TTCTTGGGAGACTGTTTCATTCGGATTGTGCATTTTCCGTTTGCCCATGT
AATCAACAGCCGCACGCAGTGTGAATTAAACCTCGTCAGGACTAGCACGA
TGCCATAGAATCCTCGACGGACGAGGCACAGTCACTGCATAAACAATTCG
CACGGAGTGAAGTGGAGCCAAAAGTAATACAGGGTGTTCCCAGACAAAAT
GGGTCGCAGCAACTTCAGTTCGCATCACCAGCAGACTCATGTGAGGCGCC
ACCGCAATGCTGGCGGTGCCACATCAAAATCACCAAACGCAGCCAAAACT
TCGCCAACAATGACGGACTACCTGTCGCTGCACTCGCGACTCGCCCAGGT
GGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAATGACGAAC
GCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACGAGATCAAG
CTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGCATCAAGCT
GGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTCCATTGCCA
GGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTCTCCTCCAG
ATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGACAAGGCAC
ACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGGACTGCAGT
CTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGAAGCTGGAG
GAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACTTGGTACAT
CATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTTTGTGGCCA
ATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTCGAGCAGGGA
TCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGACGAAAAGCA
TCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATCGGGCTATGA
AGCGCCAGGGGATTCTGGACGATATGCAGAAGCGTGGTGTCTTATATCTG
CATGCCCATAGCGTGGACAACATCCTGATCAAGGTGGCCGATCCCGTTTT
TATCGGCTACTGCGTGCAGGAGAAGGCCGACTGCGCCGCTAAGGTGGTGG
AGAAGGCAGCTCCCAACGAGGCTGTGGGCGTGGTGGCCATTGTCGATGGC
AAATACCAGGTGGTGGAGTACAGCGAAATCTCGGCCAAAACAGCCGAGAT
GCGCAATTCAGACGGCAGGCTGACCTTCAGTGCTGGCAACATTTGCAATC
ACTTCTTCAGCTCGAACTTCCTGCAGAAGATTGGCAGCACATACGAGCAG
GAGCTGAAGCTGCACGTGGCCAAGAAGAAGATTCCCTTCGTGGACAACGC
CGGCAAGCGTCTAACGCCCGACAAGCCGAACGGCATCAAGATAGAGAAGT
TTGTCTTTGACGTCTTCGAGTTCGCCCAGAAGTTCGTGGCCATGGAAGTG
CCACGCGACGAAGAGTTCAGCGCGCTAAAGAACTCCGATGCAGCTGGCAA
GGATTGCCCCAGTACTGCCCGCTCGGACCTCCATCGCCTGCACAAGAAGT
ATATCGAAGGCGCCGGTGGCATTGTGCATGGCGAAGTCTGCGAGATCTCG
CCCTTCGTCACCTACGCCGGCGAGAATCTCGCCTCGCATGTGGAGGGCAA
GTCGTTCACCAGTCCCGTCTACCTGCGGGACAGCCGCGATCCCTTGCACG
GACACCTTTAAGATGTAGGGGATCTGCATGGACGCATAGACTGATGGACG
GATAGTAGTCGTTTCGATTATTTGTAAATCTTTCGTATACCGTTGATGAA
CTTTATGATTCCCCAAACTGTAGTTAGTGCACGGAAATTCCATTGATTTC
AGTACTTAAAGGAGACTTGTAAAAATTTGTTACCTATTGTGTCCGTTGAT
TTATTTTTCGTTTTTGAAATAATTGTGCAATCGTAATGTGAATATATACA
ATATATAGAACATGTAAAAAAAAAAAAAAAAAAAAA

LD24639.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-RA 2174 mmy-RA 103..2119 1..2017 10085 100 Plus
mmy-RB 2030 mmy-RB 218..1975 260..2017 8790 100 Plus
mmy.a 1491 mmy.a 70..1440 647..2017 6855 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6467564..6468934 2015..645 6825 99.9 Minus
chr2L 23010047 chr2L 6470300..6470688 647..259 1945 100 Minus
chr2L 23010047 chr2L 6472604..6472862 259..1 1295 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6468589..6469961 2017..645 6865 100 Minus
2L 23513712 2L 6471327..6471715 647..259 1945 100 Minus
2L 23513712 2L 6473631..6473889 259..1 1295 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6468589..6469961 2017..645 6865 100 Minus
2L 23513712 2L 6471327..6471715 647..259 1945 100 Minus
2L 23513712 2L 6473631..6473889 259..1 1295 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:51:12 has no hits.

LD24639.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:52:14 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6472604..6472862 1..259 100   Minus
chr2L 6467564..6468932 647..2015 99 <- Minus
chr2L 6470301..6470687 260..646 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:02 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 1..1563 199..1761 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:46 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 1..1563 199..1761 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:06:37 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 1..1563 199..1761 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:21 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 1..1563 199..1761 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:02 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 1..1563 199..1761 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:47 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 31..2045 1..2015 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:45 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 31..2045 1..2015 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:37 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 16..2030 1..2015 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:22 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 31..2045 1..2015 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:02 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 16..2030 1..2015 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:14 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6468591..6469959 647..2015 100 <- Minus
2L 6471328..6471714 260..646 100 <- Minus
2L 6473631..6473889 1..259 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:14 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6468591..6469959 647..2015 100 <- Minus
2L 6471328..6471714 260..646 100 <- Minus
2L 6473631..6473889 1..259 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:14 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6468591..6469959 647..2015 100 <- Minus
2L 6471328..6471714 260..646 100 <- Minus
2L 6473631..6473889 1..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:37 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6468591..6469959 647..2015 100 <- Minus
arm_2L 6471328..6471714 260..646 100 <- Minus
arm_2L 6473631..6473889 1..259 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:05 Download gff for LD24639.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6473631..6473889 1..259 100   Minus
2L 6468591..6469959 647..2015 100 <- Minus
2L 6471328..6471714 260..646 100 <- Minus

LD24639.hyp Sequence

Translation from 198 to 1760

> LD24639.hyp
MGRSNFSSHHQQTHVRRHRNAGGATSKSPNAAKTSPTMTDYLSLHSRLAQ
VGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKLYFDRATVSMNENGIK
LDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQISNGHVAVLLMAGGQG
TRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEELAQEANGKRGHITWY
IMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGSLPCFEYDGRIILDEK
HRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLHAHSVDNILIKVADPV
FIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKYQVVEYSEISAKTAE
MRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQELKLHVAKKKIPFVDN
AGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVPRDEEFSALKNSDAAG
KDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISPFVTYAGENLASHVEG
KSFTSPVYLRDSRDPLHGHL*

LD24639.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-PA 520 CG9535-PA 1..520 1..520 2709 100 Plus
mmy-PB 483 CG9535-PB 1..483 38..520 2512 100 Plus
mmy-PD 483 CG9535-PD 1..483 38..520 2512 100 Plus

LD24639.pep Sequence

Translation from 198 to 1760

> LD24639.pep
MGRSNFSSHHQQTHVRRHRNAGGATSKSPNAAKTSPTMTDYLSLHSRLAQ
VGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKLYFDRATVSMNENGIK
LDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQISNGHVAVLLMAGGQG
TRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEELAQEANGKRGHITWY
IMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGSLPCFEYDGRIILDEK
HRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLHAHSVDNILIKVADPV
FIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKYQVVEYSEISAKTAE
MRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQELKLHVAKKKIPFVDN
AGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVPRDEEFSALKNSDAAG
KDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISPFVTYAGENLASHVEG
KSFTSPVYLRDSRDPLHGHL*

LD24639.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23678-PA 519 GF23678-PA 1..519 1..520 2595 92.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23620-PA 520 GG23620-PA 1..520 1..520 2716 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13251-PA 478 GH13251-PA 5..478 44..520 2096 79.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-PA 520 CG9535-PA 1..520 1..520 2709 100 Plus
mmy-PB 483 CG9535-PB 1..483 38..520 2512 100 Plus
mmy-PD 483 CG9535-PD 1..483 38..520 2512 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17290-PA 512 GI17290-PA 5..512 4..520 2099 75.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26105-PA 521 GL26105-PA 1..521 1..520 2458 88.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21861-PA 521 GA21861-PA 1..521 1..520 2455 88.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17936-PA 520 GM17936-PA 1..520 1..520 2767 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22574-PA 441 GD22574-PA 1..338 1..338 1791 98.8 Plus
Dsim\GD22574-PA 441 GD22574-PA 335..441 414..520 562 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17900-PA 481 GJ17900-PA 1..476 38..512 2135 81.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18694-PA 509 GK18694-PA 4..509 9..520 2444 89.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18439-PA 520 GE18439-PA 1..520 1..520 2741 97.7 Plus